Strain Fitness in Serratia liquefaciens MT49 around IAI46_13045

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13040 and IAI46_13045 are separated by 213 nucleotidesIAI46_13045 and IAI46_13050 are separated by 52 nucleotidesIAI46_13050 and IAI46_13055 overlap by 11 nucleotides IAI46_13040: IAI46_13040 - AraC family transcriptional regulator, at 2,783,348 to 2,784,175 _13040 IAI46_13045: IAI46_13045 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,784,389 to 2,785,822 _13045 IAI46_13050: IAI46_13050 - alpha/beta hydrolase, at 2,785,875 to 2,786,783 _13050 IAI46_13055: IAI46_13055 - alpha/beta hydrolase, at 2,786,773 to 2,787,669 _13055 Position (kb) 2784 2785 2786Strain fitness (log2 ratio) -1 0 1at 2783.611 kb on + strand, within IAI46_13040at 2784.070 kb on - strand, within IAI46_13040at 2784.078 kb on - strand, within IAI46_13040at 2784.215 kb on - strandat 2784.237 kb on + strandat 2784.281 kb on - strandat 2784.411 kb on - strandat 2784.829 kb on + strand, within IAI46_13045at 2784.996 kb on + strand, within IAI46_13045at 2785.026 kb on - strand, within IAI46_13045at 2785.316 kb on - strand, within IAI46_13045at 2785.427 kb on - strand, within IAI46_13045at 2785.488 kb on + strand, within IAI46_13045at 2785.489 kb on - strand, within IAI46_13045at 2785.605 kb on - strand, within IAI46_13045at 2785.619 kb on + strand, within IAI46_13045at 2785.626 kb on - strand, within IAI46_13045at 2785.785 kb on - strandat 2785.837 kb on + strandat 2785.838 kb on - strandat 2785.841 kb on + strandat 2785.841 kb on + strandat 2785.842 kb on - strandat 2785.842 kb on - strandat 2785.842 kb on - strandat 2785.842 kb on - strandat 2785.851 kb on - strandat 2785.859 kb on + strandat 2786.032 kb on + strand, within IAI46_13050at 2786.170 kb on + strand, within IAI46_13050at 2786.170 kb on + strand, within IAI46_13050at 2786.194 kb on + strand, within IAI46_13050at 2786.393 kb on - strand, within IAI46_13050at 2786.500 kb on + strand, within IAI46_13050at 2786.501 kb on - strand, within IAI46_13050at 2786.590 kb on + strand, within IAI46_13050

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,783,611 + IAI46_13040 0.32 -1.5
2,784,070 - IAI46_13040 0.87 +0.6
2,784,078 - IAI46_13040 0.88 +0.9
2,784,215 - +0.8
2,784,237 + -0.4
2,784,281 - +0.1
2,784,411 - -0.6
2,784,829 + IAI46_13045 0.31 +0.1
2,784,996 + IAI46_13045 0.42 +0.5
2,785,026 - IAI46_13045 0.44 -0.3
2,785,316 - IAI46_13045 0.65 -0.6
2,785,427 - IAI46_13045 0.72 +0.0
2,785,488 + IAI46_13045 0.77 +1.1
2,785,489 - IAI46_13045 0.77 +0.3
2,785,605 - IAI46_13045 0.85 -0.9
2,785,619 + IAI46_13045 0.86 +0.2
2,785,626 - IAI46_13045 0.86 +0.7
2,785,785 - -0.2
2,785,837 + -0.5
2,785,838 - +0.9
2,785,841 + +0.9
2,785,841 + +0.7
2,785,842 - -0.2
2,785,842 - +1.6
2,785,842 - +0.4
2,785,842 - -1.6
2,785,851 - -0.1
2,785,859 + +1.1
2,786,032 + IAI46_13050 0.17 -0.2
2,786,170 + IAI46_13050 0.32 -1.4
2,786,170 + IAI46_13050 0.32 -1.4
2,786,194 + IAI46_13050 0.35 -0.4
2,786,393 - IAI46_13050 0.57 +0.6
2,786,500 + IAI46_13050 0.69 -0.9
2,786,501 - IAI46_13050 0.69 +0.6
2,786,590 + IAI46_13050 0.79 +1.1

Or see this region's nucleotide sequence