Strain Fitness in Serratia liquefaciens MT49 around IAI46_10995

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10985 and IAI46_10990 are separated by 4 nucleotidesIAI46_10990 and IAI46_10995 are separated by 567 nucleotidesIAI46_10995 and IAI46_11000 are separated by 173 nucleotides IAI46_10985: IAI46_10985 - phenylalanine--tRNA ligase subunit beta, at 2,320,186 to 2,322,573 _10985 IAI46_10990: IAI46_10990 - integration host factor subunit alpha, at 2,322,578 to 2,322,874 _10990 IAI46_10995: IAI46_10995 - DUF2502 domain-containing protein, at 2,323,442 to 2,323,861 _10995 IAI46_11000: IAI46_11000 - vitamin B12 ABC transporter permease BtuC, at 2,324,035 to 2,325,042 _11000 Position (kb) 2323 2324Strain fitness (log2 ratio) -1 0 1at 2322.873 kb on - strandat 2323.134 kb on - strandat 2323.244 kb on + strandat 2323.569 kb on - strand, within IAI46_10995at 2323.571 kb on + strand, within IAI46_10995at 2323.571 kb on + strand, within IAI46_10995at 2323.869 kb on + strandat 2323.870 kb on - strandat 2323.870 kb on - strandat 2323.973 kb on + strandat 2323.993 kb on + strandat 2324.035 kb on - strandat 2324.060 kb on + strandat 2324.100 kb on - strandat 2324.322 kb on - strand, within IAI46_11000at 2324.366 kb on + strand, within IAI46_11000at 2324.367 kb on - strand, within IAI46_11000at 2324.369 kb on + strand, within IAI46_11000at 2324.451 kb on + strand, within IAI46_11000at 2324.451 kb on + strand, within IAI46_11000at 2324.548 kb on + strand, within IAI46_11000at 2324.549 kb on - strand, within IAI46_11000at 2324.579 kb on + strand, within IAI46_11000at 2324.579 kb on + strand, within IAI46_11000at 2324.579 kb on + strand, within IAI46_11000at 2324.580 kb on - strand, within IAI46_11000at 2324.584 kb on + strand, within IAI46_11000at 2324.584 kb on + strand, within IAI46_11000at 2324.585 kb on - strand, within IAI46_11000at 2324.585 kb on - strand, within IAI46_11000at 2324.712 kb on - strand, within IAI46_11000at 2324.791 kb on - strand, within IAI46_11000at 2324.791 kb on - strand, within IAI46_11000at 2324.841 kb on + strand, within IAI46_11000at 2324.841 kb on + strand, within IAI46_11000

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,322,873 - +0.0
2,323,134 - +1.5
2,323,244 + +0.6
2,323,569 - IAI46_10995 0.30 -0.1
2,323,571 + IAI46_10995 0.31 -1.1
2,323,571 + IAI46_10995 0.31 +0.6
2,323,869 + +1.3
2,323,870 - +0.9
2,323,870 - +0.3
2,323,973 + -0.7
2,323,993 + -0.4
2,324,035 - +1.6
2,324,060 + -1.0
2,324,100 - -0.1
2,324,322 - IAI46_11000 0.28 +0.1
2,324,366 + IAI46_11000 0.33 +0.0
2,324,367 - IAI46_11000 0.33 -0.8
2,324,369 + IAI46_11000 0.33 -0.4
2,324,451 + IAI46_11000 0.41 +0.0
2,324,451 + IAI46_11000 0.41 +0.2
2,324,548 + IAI46_11000 0.51 -0.1
2,324,549 - IAI46_11000 0.51 -0.9
2,324,579 + IAI46_11000 0.54 -0.4
2,324,579 + IAI46_11000 0.54 -0.1
2,324,579 + IAI46_11000 0.54 -0.7
2,324,580 - IAI46_11000 0.54 -0.2
2,324,584 + IAI46_11000 0.54 -0.5
2,324,584 + IAI46_11000 0.54 -0.7
2,324,585 - IAI46_11000 0.55 -1.3
2,324,585 - IAI46_11000 0.55 -0.5
2,324,712 - IAI46_11000 0.67 +0.8
2,324,791 - IAI46_11000 0.75 -0.4
2,324,791 - IAI46_11000 0.75 +0.7
2,324,841 + IAI46_11000 0.80 +0.1
2,324,841 + IAI46_11000 0.80 +0.1

Or see this region's nucleotide sequence