Strain Fitness in Serratia liquefaciens MT49 around IAI46_10800

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10790 and IAI46_10795 are separated by 95 nucleotidesIAI46_10795 and IAI46_10800 are separated by 19 nucleotidesIAI46_10800 and IAI46_10805 are separated by 99 nucleotidesIAI46_10805 and IAI46_10810 are separated by 406 nucleotides IAI46_10790: IAI46_10790 - GAF domain-containing protein, at 2,281,569 to 2,282,066 _10790 IAI46_10795: IAI46_10795 - RNA chaperone ProQ, at 2,282,162 to 2,282,872 _10795 IAI46_10800: IAI46_10800 - carboxy terminal-processing peptidase, at 2,282,892 to 2,284,928 _10800 IAI46_10805: IAI46_10805 - DUF4260 domain-containing protein, at 2,285,028 to 2,285,411 _10805 IAI46_10810: IAI46_10810 - protease HtpX, at 2,285,818 to 2,286,696 _10810 Position (kb) 2282 2283 2284 2285Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2282.043 kb on + strandat 2282.087 kb on + strandat 2282.104 kb on + strandat 2282.104 kb on + strandat 2282.105 kb on - strandat 2282.105 kb on - strandat 2282.105 kb on - strandat 2282.105 kb on - strandat 2282.148 kb on - strandat 2282.176 kb on + strandat 2282.188 kb on + strandat 2282.191 kb on + strandat 2282.192 kb on - strandat 2282.352 kb on - strand, within IAI46_10795at 2282.369 kb on + strand, within IAI46_10795at 2282.375 kb on + strand, within IAI46_10795at 2282.719 kb on + strand, within IAI46_10795at 2282.783 kb on - strand, within IAI46_10795at 2282.811 kb on + strandat 2282.811 kb on + strandat 2282.949 kb on + strandat 2282.996 kb on + strandat 2283.035 kb on - strandat 2283.120 kb on - strand, within IAI46_10800at 2283.130 kb on - strand, within IAI46_10800at 2283.137 kb on + strand, within IAI46_10800at 2283.137 kb on + strand, within IAI46_10800at 2283.137 kb on + strand, within IAI46_10800at 2283.237 kb on + strand, within IAI46_10800at 2283.238 kb on - strand, within IAI46_10800at 2283.270 kb on + strand, within IAI46_10800at 2283.276 kb on + strand, within IAI46_10800at 2283.573 kb on + strand, within IAI46_10800at 2283.663 kb on + strand, within IAI46_10800at 2283.663 kb on + strand, within IAI46_10800at 2283.664 kb on - strand, within IAI46_10800at 2283.664 kb on - strand, within IAI46_10800at 2283.759 kb on - strand, within IAI46_10800at 2283.902 kb on + strand, within IAI46_10800at 2283.987 kb on + strand, within IAI46_10800at 2284.102 kb on + strand, within IAI46_10800at 2284.147 kb on + strand, within IAI46_10800at 2284.147 kb on + strand, within IAI46_10800at 2284.203 kb on + strand, within IAI46_10800at 2284.204 kb on - strand, within IAI46_10800at 2284.360 kb on - strand, within IAI46_10800at 2284.407 kb on + strand, within IAI46_10800at 2284.408 kb on - strand, within IAI46_10800at 2284.547 kb on + strand, within IAI46_10800at 2284.547 kb on + strand, within IAI46_10800at 2284.548 kb on - strand, within IAI46_10800at 2284.551 kb on - strand, within IAI46_10800at 2284.564 kb on - strand, within IAI46_10800at 2284.674 kb on + strand, within IAI46_10800at 2284.772 kb on + strandat 2285.038 kb on + strandat 2285.039 kb on - strandat 2285.059 kb on + strandat 2285.089 kb on + strand, within IAI46_10805at 2285.089 kb on + strand, within IAI46_10805at 2285.104 kb on + strand, within IAI46_10805at 2285.104 kb on + strand, within IAI46_10805at 2285.104 kb on + strand, within IAI46_10805at 2285.105 kb on - strand, within IAI46_10805at 2285.106 kb on + strand, within IAI46_10805at 2285.106 kb on + strand, within IAI46_10805at 2285.107 kb on - strand, within IAI46_10805at 2285.121 kb on + strand, within IAI46_10805at 2285.179 kb on - strand, within IAI46_10805at 2285.183 kb on - strand, within IAI46_10805at 2285.183 kb on - strand, within IAI46_10805at 2285.183 kb on - strand, within IAI46_10805at 2285.229 kb on + strand, within IAI46_10805at 2285.229 kb on + strand, within IAI46_10805at 2285.229 kb on + strand, within IAI46_10805at 2285.230 kb on - strand, within IAI46_10805at 2285.257 kb on + strand, within IAI46_10805at 2285.443 kb on + strandat 2285.444 kb on - strandat 2285.496 kb on - strandat 2285.798 kb on + strandat 2285.817 kb on + strandat 2285.826 kb on + strandat 2285.828 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,282,043 + +0.0
2,282,087 + +0.8
2,282,104 + -0.2
2,282,104 + -0.2
2,282,105 - +0.3
2,282,105 - -0.7
2,282,105 - +0.6
2,282,105 - -0.4
2,282,148 - -0.7
2,282,176 + +1.3
2,282,188 + -0.3
2,282,191 + -0.5
2,282,192 - -1.0
2,282,352 - IAI46_10795 0.27 -1.7
2,282,369 + IAI46_10795 0.29 -1.7
2,282,375 + IAI46_10795 0.30 +0.0
2,282,719 + IAI46_10795 0.78 -0.1
2,282,783 - IAI46_10795 0.87 -1.3
2,282,811 + +0.5
2,282,811 + -1.7
2,282,949 + -2.1
2,282,996 + -0.9
2,283,035 - -1.5
2,283,120 - IAI46_10800 0.11 -1.0
2,283,130 - IAI46_10800 0.12 -1.8
2,283,137 + IAI46_10800 0.12 -0.9
2,283,137 + IAI46_10800 0.12 +1.9
2,283,137 + IAI46_10800 0.12 -0.7
2,283,237 + IAI46_10800 0.17 -0.9
2,283,238 - IAI46_10800 0.17 -2.3
2,283,270 + IAI46_10800 0.19 +0.2
2,283,276 + IAI46_10800 0.19 -0.5
2,283,573 + IAI46_10800 0.33 -0.9
2,283,663 + IAI46_10800 0.38 -2.0
2,283,663 + IAI46_10800 0.38 -1.7
2,283,664 - IAI46_10800 0.38 -2.3
2,283,664 - IAI46_10800 0.38 +0.2
2,283,759 - IAI46_10800 0.43 +1.6
2,283,902 + IAI46_10800 0.50 +0.7
2,283,987 + IAI46_10800 0.54 -1.0
2,284,102 + IAI46_10800 0.59 +0.3
2,284,147 + IAI46_10800 0.62 -1.5
2,284,147 + IAI46_10800 0.62 -1.8
2,284,203 + IAI46_10800 0.64 -1.0
2,284,204 - IAI46_10800 0.64 -1.3
2,284,360 - IAI46_10800 0.72 -0.3
2,284,407 + IAI46_10800 0.74 -1.7
2,284,408 - IAI46_10800 0.74 -0.3
2,284,547 + IAI46_10800 0.81 -0.2
2,284,547 + IAI46_10800 0.81 -1.5
2,284,548 - IAI46_10800 0.81 +1.9
2,284,551 - IAI46_10800 0.81 -0.7
2,284,564 - IAI46_10800 0.82 -1.5
2,284,674 + IAI46_10800 0.87 -0.8
2,284,772 + -1.5
2,285,038 + +0.8
2,285,039 - +0.9
2,285,059 + -0.3
2,285,089 + IAI46_10805 0.16 -0.0
2,285,089 + IAI46_10805 0.16 -0.3
2,285,104 + IAI46_10805 0.20 +1.1
2,285,104 + IAI46_10805 0.20 +1.0
2,285,104 + IAI46_10805 0.20 +0.8
2,285,105 - IAI46_10805 0.20 -0.4
2,285,106 + IAI46_10805 0.20 +0.1
2,285,106 + IAI46_10805 0.20 -1.0
2,285,107 - IAI46_10805 0.21 +1.0
2,285,121 + IAI46_10805 0.24 -0.9
2,285,179 - IAI46_10805 0.39 -1.0
2,285,183 - IAI46_10805 0.40 -0.6
2,285,183 - IAI46_10805 0.40 +0.2
2,285,183 - IAI46_10805 0.40 +1.3
2,285,229 + IAI46_10805 0.52 +0.6
2,285,229 + IAI46_10805 0.52 -1.9
2,285,229 + IAI46_10805 0.52 +1.0
2,285,230 - IAI46_10805 0.53 -0.1
2,285,257 + IAI46_10805 0.60 +0.3
2,285,443 + -0.2
2,285,444 - +0.2
2,285,496 - +0.0
2,285,798 + -0.0
2,285,817 + -2.8
2,285,826 + +0.9
2,285,828 + +1.3

Or see this region's nucleotide sequence