Strain Fitness in Serratia liquefaciens MT49 around IAI46_10660

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10650 and IAI46_10655 are separated by 86 nucleotidesIAI46_10655 and IAI46_10660 are separated by 94 nucleotidesIAI46_10660 and IAI46_10665 are separated by 17 nucleotides IAI46_10650: IAI46_10650 - GFA family protein, at 2,250,239 to 2,250,625 _10650 IAI46_10655: IAI46_10655 - hydrolase, at 2,250,712 to 2,251,410 _10655 IAI46_10660: IAI46_10660 - TetR/AcrR family transcriptional regulator, at 2,251,505 to 2,252,161 _10660 IAI46_10665: IAI46_10665 - aromatic amino acid lyase, at 2,252,179 to 2,253,828 _10665 Position (kb) 2251 2252 2253Strain fitness (log2 ratio) -2 -1 0 1 2at 2250.650 kb on + strandat 2250.650 kb on + strandat 2250.657 kb on + strandat 2250.668 kb on + strandat 2250.671 kb on + strandat 2250.671 kb on + strandat 2250.672 kb on - strandat 2250.672 kb on - strandat 2250.674 kb on - strandat 2250.674 kb on - strandat 2250.753 kb on - strandat 2250.798 kb on - strand, within IAI46_10655at 2250.899 kb on + strand, within IAI46_10655at 2251.311 kb on + strand, within IAI46_10655at 2251.569 kb on + strandat 2251.570 kb on - strandat 2251.620 kb on - strand, within IAI46_10660at 2252.187 kb on + strandat 2252.282 kb on + strandat 2252.283 kb on - strandat 2252.471 kb on + strand, within IAI46_10665at 2252.748 kb on - strand, within IAI46_10665at 2252.847 kb on - strand, within IAI46_10665at 2252.847 kb on - strand, within IAI46_10665at 2252.858 kb on + strand, within IAI46_10665at 2253.075 kb on - strand, within IAI46_10665at 2253.085 kb on - strand, within IAI46_10665at 2253.133 kb on - strand, within IAI46_10665at 2253.143 kb on + strand, within IAI46_10665

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,250,650 + +0.1
2,250,650 + +0.4
2,250,657 + +0.7
2,250,668 + +1.4
2,250,671 + -0.1
2,250,671 + -0.1
2,250,672 - +0.3
2,250,672 - -2.7
2,250,674 - -0.2
2,250,674 - +0.4
2,250,753 - -0.1
2,250,798 - IAI46_10655 0.12 +0.5
2,250,899 + IAI46_10655 0.27 -0.5
2,251,311 + IAI46_10655 0.86 +0.8
2,251,569 + +1.1
2,251,570 - +0.9
2,251,620 - IAI46_10660 0.18 -0.5
2,252,187 + +0.0
2,252,282 + +1.1
2,252,283 - +0.4
2,252,471 + IAI46_10665 0.18 -0.4
2,252,748 - IAI46_10665 0.34 -0.4
2,252,847 - IAI46_10665 0.40 +2.2
2,252,847 - IAI46_10665 0.40 +2.2
2,252,858 + IAI46_10665 0.41 +0.2
2,253,075 - IAI46_10665 0.54 -0.6
2,253,085 - IAI46_10665 0.55 -0.5
2,253,133 - IAI46_10665 0.58 -1.1
2,253,143 + IAI46_10665 0.58 -0.8

Or see this region's nucleotide sequence