Strain Fitness in Serratia liquefaciens MT49 around IAI46_10460

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10450 and IAI46_10455 are separated by 21 nucleotidesIAI46_10455 and IAI46_10460 are separated by 132 nucleotidesIAI46_10460 and IAI46_10465 are separated by 62 nucleotides IAI46_10450: IAI46_10450 - hypothetical protein, at 2,209,239 to 2,209,574 _10450 IAI46_10455: IAI46_10455 - 23S rRNA pseudouridine(2457) synthase RluE, at 2,209,596 to 2,210,222 _10455 IAI46_10460: IAI46_10460 - NADP-dependent isocitrate dehydrogenase, at 2,210,355 to 2,211,608 _10460 IAI46_10465: IAI46_10465 - Mig-14 family protein, at 2,211,671 to 2,212,591 _10465 Position (kb) 2210 2211 2212Strain fitness (log2 ratio) -2 -1 0 1 2at 2209.408 kb on - strand, within IAI46_10450at 2209.417 kb on + strand, within IAI46_10450at 2209.450 kb on - strand, within IAI46_10450at 2209.454 kb on + strand, within IAI46_10450at 2209.455 kb on - strand, within IAI46_10450at 2209.564 kb on - strandat 2209.598 kb on - strandat 2209.598 kb on - strandat 2209.658 kb on + strandat 2209.658 kb on + strandat 2209.659 kb on - strand, within IAI46_10455at 2209.659 kb on - strand, within IAI46_10455at 2209.663 kb on + strand, within IAI46_10455at 2209.682 kb on + strand, within IAI46_10455at 2209.925 kb on - strand, within IAI46_10455at 2210.253 kb on + strandat 2210.297 kb on + strandat 2211.606 kb on + strandat 2211.607 kb on - strandat 2211.607 kb on - strandat 2211.607 kb on - strandat 2211.721 kb on + strandat 2211.721 kb on + strandat 2211.724 kb on - strandat 2211.862 kb on + strand, within IAI46_10465at 2211.862 kb on + strand, within IAI46_10465at 2211.862 kb on + strand, within IAI46_10465at 2211.878 kb on - strand, within IAI46_10465at 2211.887 kb on - strand, within IAI46_10465at 2211.905 kb on + strand, within IAI46_10465at 2211.976 kb on + strand, within IAI46_10465at 2211.977 kb on - strand, within IAI46_10465at 2212.046 kb on + strand, within IAI46_10465at 2212.206 kb on - strand, within IAI46_10465at 2212.224 kb on - strand, within IAI46_10465at 2212.307 kb on + strand, within IAI46_10465at 2212.410 kb on - strand, within IAI46_10465at 2212.414 kb on + strand, within IAI46_10465at 2212.435 kb on + strand, within IAI46_10465at 2212.435 kb on + strand, within IAI46_10465at 2212.440 kb on + strand, within IAI46_10465at 2212.441 kb on - strand, within IAI46_10465at 2212.441 kb on - strand, within IAI46_10465at 2212.466 kb on - strand, within IAI46_10465at 2212.591 kb on + strandat 2212.591 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,209,408 - IAI46_10450 0.50 +0.5
2,209,417 + IAI46_10450 0.53 +1.4
2,209,450 - IAI46_10450 0.63 -0.1
2,209,454 + IAI46_10450 0.64 +1.1
2,209,455 - IAI46_10450 0.64 +0.5
2,209,564 - +0.5
2,209,598 - +1.1
2,209,598 - +0.9
2,209,658 + -0.2
2,209,658 + -0.7
2,209,659 - IAI46_10455 0.10 -0.1
2,209,659 - IAI46_10455 0.10 +0.9
2,209,663 + IAI46_10455 0.11 +1.1
2,209,682 + IAI46_10455 0.14 +1.4
2,209,925 - IAI46_10455 0.52 -0.6
2,210,253 + +0.3
2,210,297 + +2.0
2,211,606 + -0.1
2,211,607 - +1.0
2,211,607 - +0.8
2,211,607 - +0.2
2,211,721 + +0.3
2,211,721 + +0.9
2,211,724 - -1.2
2,211,862 + IAI46_10465 0.21 -0.6
2,211,862 + IAI46_10465 0.21 -0.5
2,211,862 + IAI46_10465 0.21 -2.6
2,211,878 - IAI46_10465 0.22 +0.2
2,211,887 - IAI46_10465 0.23 +0.2
2,211,905 + IAI46_10465 0.25 -1.1
2,211,976 + IAI46_10465 0.33 +0.2
2,211,977 - IAI46_10465 0.33 +0.4
2,212,046 + IAI46_10465 0.41 +0.6
2,212,206 - IAI46_10465 0.58 -0.4
2,212,224 - IAI46_10465 0.60 +0.8
2,212,307 + IAI46_10465 0.69 +0.2
2,212,410 - IAI46_10465 0.80 -0.7
2,212,414 + IAI46_10465 0.81 +0.7
2,212,435 + IAI46_10465 0.83 -0.6
2,212,435 + IAI46_10465 0.83 -1.6
2,212,440 + IAI46_10465 0.83 +0.7
2,212,441 - IAI46_10465 0.84 -0.1
2,212,441 - IAI46_10465 0.84 +1.4
2,212,466 - IAI46_10465 0.86 -2.1
2,212,591 + -1.6
2,212,591 + +0.0

Or see this region's nucleotide sequence