Strain Fitness in Serratia liquefaciens MT49 around IAI46_09025

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09020 and IAI46_09025 are separated by 24 nucleotidesIAI46_09025 and IAI46_09030 are separated by 66 nucleotidesIAI46_09030 and IAI46_09035 are separated by 14 nucleotides IAI46_09020: IAI46_09020 - DMT family transporter, at 1,933,648 to 1,934,565 _09020 IAI46_09025: IAI46_09025 - pyrimidine utilization transport protein G, at 1,934,590 to 1,935,909 _09025 IAI46_09030: IAI46_09030 - pyrimidine utilization flavin reductase protein F, at 1,935,976 to 1,936,503 _09030 IAI46_09035: IAI46_09035 - pyrimidine utilization protein D, at 1,936,518 to 1,937,321 _09035 Position (kb) 1934 1935 1936Strain fitness (log2 ratio) -2 -1 0 1 2at 1933.671 kb on + strandat 1933.694 kb on + strandat 1933.818 kb on + strand, within IAI46_09020at 1933.836 kb on - strand, within IAI46_09020at 1933.870 kb on + strand, within IAI46_09020at 1933.984 kb on + strand, within IAI46_09020at 1933.984 kb on + strand, within IAI46_09020at 1933.984 kb on + strand, within IAI46_09020at 1933.984 kb on + strand, within IAI46_09020at 1933.984 kb on + strand, within IAI46_09020at 1933.984 kb on + strand, within IAI46_09020at 1933.985 kb on - strand, within IAI46_09020at 1933.985 kb on - strand, within IAI46_09020at 1933.985 kb on - strand, within IAI46_09020at 1933.985 kb on - strand, within IAI46_09020at 1933.985 kb on - strand, within IAI46_09020at 1933.985 kb on - strand, within IAI46_09020at 1934.189 kb on - strand, within IAI46_09020at 1934.209 kb on - strand, within IAI46_09020at 1934.293 kb on + strand, within IAI46_09020at 1934.303 kb on - strand, within IAI46_09020at 1934.471 kb on + strand, within IAI46_09020at 1934.499 kb on - strandat 1934.499 kb on - strandat 1934.639 kb on - strandat 1934.752 kb on - strand, within IAI46_09025at 1934.779 kb on + strand, within IAI46_09025at 1934.780 kb on - strand, within IAI46_09025at 1934.869 kb on - strand, within IAI46_09025at 1934.869 kb on - strand, within IAI46_09025at 1934.952 kb on - strand, within IAI46_09025at 1934.990 kb on + strand, within IAI46_09025at 1935.067 kb on - strand, within IAI46_09025at 1935.067 kb on - strand, within IAI46_09025at 1935.068 kb on + strand, within IAI46_09025at 1935.068 kb on + strand, within IAI46_09025at 1935.068 kb on + strand, within IAI46_09025at 1935.069 kb on - strand, within IAI46_09025at 1935.281 kb on + strand, within IAI46_09025at 1935.330 kb on + strand, within IAI46_09025at 1935.331 kb on - strand, within IAI46_09025at 1935.331 kb on - strand, within IAI46_09025at 1935.372 kb on + strand, within IAI46_09025at 1935.373 kb on - strand, within IAI46_09025at 1935.373 kb on - strand, within IAI46_09025at 1935.451 kb on - strand, within IAI46_09025at 1935.543 kb on - strand, within IAI46_09025at 1935.900 kb on + strandat 1936.013 kb on + strandat 1936.161 kb on + strand, within IAI46_09030at 1936.161 kb on + strand, within IAI46_09030at 1936.162 kb on - strand, within IAI46_09030at 1936.162 kb on - strand, within IAI46_09030at 1936.248 kb on + strand, within IAI46_09030at 1936.248 kb on + strand, within IAI46_09030at 1936.249 kb on - strand, within IAI46_09030at 1936.249 kb on - strand, within IAI46_09030at 1936.249 kb on - strand, within IAI46_09030at 1936.395 kb on + strand, within IAI46_09030at 1936.396 kb on - strand, within IAI46_09030at 1936.401 kb on + strand, within IAI46_09030at 1936.402 kb on - strand, within IAI46_09030at 1936.503 kb on + strandat 1936.504 kb on - strandat 1936.621 kb on + strand, within IAI46_09035at 1936.622 kb on - strand, within IAI46_09035at 1936.622 kb on - strand, within IAI46_09035at 1936.840 kb on - strand, within IAI46_09035at 1936.903 kb on + strand, within IAI46_09035at 1936.904 kb on - strand, within IAI46_09035at 1936.904 kb on - strand, within IAI46_09035

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,933,671 + -0.4
1,933,694 + -0.5
1,933,818 + IAI46_09020 0.19 -0.9
1,933,836 - IAI46_09020 0.20 +0.8
1,933,870 + IAI46_09020 0.24 +0.6
1,933,984 + IAI46_09020 0.37 +0.7
1,933,984 + IAI46_09020 0.37 -0.1
1,933,984 + IAI46_09020 0.37 +0.1
1,933,984 + IAI46_09020 0.37 +0.8
1,933,984 + IAI46_09020 0.37 +0.0
1,933,984 + IAI46_09020 0.37 +0.9
1,933,985 - IAI46_09020 0.37 +0.2
1,933,985 - IAI46_09020 0.37 -1.8
1,933,985 - IAI46_09020 0.37 +0.5
1,933,985 - IAI46_09020 0.37 -0.2
1,933,985 - IAI46_09020 0.37 -0.1
1,933,985 - IAI46_09020 0.37 -0.2
1,934,189 - IAI46_09020 0.59 +0.2
1,934,209 - IAI46_09020 0.61 +0.4
1,934,293 + IAI46_09020 0.70 -0.0
1,934,303 - IAI46_09020 0.71 -0.0
1,934,471 + IAI46_09020 0.90 +1.0
1,934,499 - +0.0
1,934,499 - +0.1
1,934,639 - +0.0
1,934,752 - IAI46_09025 0.12 +0.9
1,934,779 + IAI46_09025 0.14 -0.1
1,934,780 - IAI46_09025 0.14 -0.3
1,934,869 - IAI46_09025 0.21 +0.4
1,934,869 - IAI46_09025 0.21 +0.6
1,934,952 - IAI46_09025 0.27 -0.1
1,934,990 + IAI46_09025 0.30 -1.0
1,935,067 - IAI46_09025 0.36 +0.4
1,935,067 - IAI46_09025 0.36 -0.7
1,935,068 + IAI46_09025 0.36 +0.8
1,935,068 + IAI46_09025 0.36 +0.2
1,935,068 + IAI46_09025 0.36 +0.3
1,935,069 - IAI46_09025 0.36 -0.4
1,935,281 + IAI46_09025 0.52 -0.1
1,935,330 + IAI46_09025 0.56 -0.7
1,935,331 - IAI46_09025 0.56 +1.6
1,935,331 - IAI46_09025 0.56 -0.5
1,935,372 + IAI46_09025 0.59 -0.0
1,935,373 - IAI46_09025 0.59 -0.6
1,935,373 - IAI46_09025 0.59 +2.4
1,935,451 - IAI46_09025 0.65 +0.3
1,935,543 - IAI46_09025 0.72 +0.9
1,935,900 + -2.3
1,936,013 + +1.1
1,936,161 + IAI46_09030 0.35 -0.3
1,936,161 + IAI46_09030 0.35 +1.0
1,936,162 - IAI46_09030 0.35 -0.0
1,936,162 - IAI46_09030 0.35 +1.4
1,936,248 + IAI46_09030 0.52 -0.2
1,936,248 + IAI46_09030 0.52 -0.4
1,936,249 - IAI46_09030 0.52 +0.9
1,936,249 - IAI46_09030 0.52 +0.2
1,936,249 - IAI46_09030 0.52 -0.0
1,936,395 + IAI46_09030 0.79 -0.1
1,936,396 - IAI46_09030 0.80 +0.6
1,936,401 + IAI46_09030 0.80 -0.3
1,936,402 - IAI46_09030 0.81 +1.1
1,936,503 + -0.4
1,936,504 - -0.0
1,936,621 + IAI46_09035 0.13 +0.6
1,936,622 - IAI46_09035 0.13 +1.1
1,936,622 - IAI46_09035 0.13 +0.3
1,936,840 - IAI46_09035 0.40 -0.0
1,936,903 + IAI46_09035 0.48 -0.1
1,936,904 - IAI46_09035 0.48 +1.9
1,936,904 - IAI46_09035 0.48 +0.1

Or see this region's nucleotide sequence