Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_07710 and IAI46_07715 are separated by 20 nucleotides IAI46_07715 and IAI46_07720 are separated by 219 nucleotides
IAI46_07710: IAI46_07710 - transcriptional regulator BetI, at 1,627,967 to 1,628,563
_07710
IAI46_07715: IAI46_07715 - betaine-aldehyde dehydrogenase, at 1,628,584 to 1,630,056
_07715
IAI46_07720: IAI46_07720 - choline dehydrogenase, at 1,630,276 to 1,631,940
_07720
Position (kb)
1628
1629
1630
1631 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1627.645 kb on + strand at 1627.645 kb on + strand at 1627.663 kb on + strand at 1627.664 kb on - strand at 1627.735 kb on - strand at 1627.875 kb on + strand at 1627.966 kb on + strand at 1628.010 kb on + strand at 1628.010 kb on + strand at 1628.146 kb on + strand, within IAI46_07710 at 1628.146 kb on + strand, within IAI46_07710 at 1628.154 kb on - strand, within IAI46_07710 at 1628.333 kb on - strand, within IAI46_07710 at 1628.390 kb on - strand, within IAI46_07710 at 1628.525 kb on + strand at 1628.583 kb on + strand at 1628.584 kb on - strand at 1628.584 kb on - strand at 1628.600 kb on + strand at 1628.611 kb on + strand at 1628.613 kb on + strand at 1628.614 kb on - strand at 1628.617 kb on - strand at 1628.626 kb on + strand at 1628.626 kb on + strand at 1628.631 kb on - strand at 1628.631 kb on - strand at 1628.793 kb on + strand, within IAI46_07715 at 1628.814 kb on + strand, within IAI46_07715 at 1628.918 kb on + strand, within IAI46_07715 at 1628.919 kb on - strand, within IAI46_07715 at 1628.926 kb on + strand, within IAI46_07715 at 1628.927 kb on - strand, within IAI46_07715 at 1628.930 kb on - strand, within IAI46_07715 at 1628.993 kb on - strand, within IAI46_07715 at 1628.993 kb on - strand, within IAI46_07715 at 1629.157 kb on + strand, within IAI46_07715 at 1629.158 kb on - strand, within IAI46_07715 at 1629.421 kb on + strand, within IAI46_07715 at 1629.421 kb on + strand, within IAI46_07715 at 1629.422 kb on - strand, within IAI46_07715 at 1629.422 kb on - strand, within IAI46_07715 at 1629.458 kb on + strand, within IAI46_07715 at 1629.596 kb on + strand, within IAI46_07715 at 1629.597 kb on - strand, within IAI46_07715 at 1629.685 kb on + strand, within IAI46_07715 at 1629.685 kb on + strand, within IAI46_07715 at 1629.685 kb on + strand, within IAI46_07715 at 1629.686 kb on - strand, within IAI46_07715 at 1629.686 kb on - strand, within IAI46_07715 at 1629.686 kb on - strand, within IAI46_07715 at 1629.701 kb on + strand, within IAI46_07715 at 1629.701 kb on + strand, within IAI46_07715 at 1629.950 kb on - strand at 1629.988 kb on - strand at 1630.000 kb on + strand at 1630.020 kb on - strand at 1630.054 kb on + strand at 1630.059 kb on - strand at 1630.079 kb on + strand at 1630.079 kb on + strand at 1630.080 kb on - strand at 1630.117 kb on + strand at 1630.151 kb on + strand at 1630.151 kb on + strand at 1630.179 kb on - strand at 1630.209 kb on + strand at 1630.210 kb on - strand at 1630.210 kb on - strand at 1630.211 kb on + strand at 1630.211 kb on + strand at 1630.212 kb on - strand at 1630.212 kb on - strand at 1630.260 kb on - strand at 1630.260 kb on - strand at 1630.270 kb on + strand at 1630.270 kb on + strand at 1630.270 kb on + strand at 1630.270 kb on + strand at 1630.271 kb on - strand at 1630.275 kb on + strand at 1630.276 kb on - strand at 1630.276 kb on - strand at 1630.361 kb on + strand at 1630.362 kb on - strand at 1630.362 kb on - strand at 1630.391 kb on - strand at 1630.454 kb on - strand, within IAI46_07720 at 1630.561 kb on + strand, within IAI46_07720 at 1630.562 kb on - strand, within IAI46_07720 at 1630.562 kb on - strand, within IAI46_07720 at 1630.562 kb on - strand, within IAI46_07720 at 1630.627 kb on + strand, within IAI46_07720 at 1630.680 kb on + strand, within IAI46_07720 at 1630.681 kb on - strand, within IAI46_07720 at 1630.734 kb on + strand, within IAI46_07720 at 1630.735 kb on - strand, within IAI46_07720 at 1630.886 kb on - strand, within IAI46_07720 at 1630.962 kb on + strand, within IAI46_07720 at 1630.963 kb on - strand, within IAI46_07720 at 1630.984 kb on + strand, within IAI46_07720 at 1630.985 kb on - strand, within IAI46_07720
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 1,627,645 + -1.6 1,627,645 + -0.2 1,627,663 + +0.5 1,627,664 - +0.2 1,627,735 - -0.9 1,627,875 + +0.5 1,627,966 + +0.5 1,628,010 + +1.8 1,628,010 + +0.2 1,628,146 + IAI46_07710 0.30 +1.2 1,628,146 + IAI46_07710 0.30 +0.1 1,628,154 - IAI46_07710 0.31 -0.3 1,628,333 - IAI46_07710 0.61 -1.9 1,628,390 - IAI46_07710 0.71 +0.7 1,628,525 + -0.5 1,628,583 + -0.1 1,628,584 - -0.6 1,628,584 - +0.6 1,628,600 + +0.3 1,628,611 + -0.1 1,628,613 + -1.3 1,628,614 - +1.2 1,628,617 - +0.8 1,628,626 + +0.1 1,628,626 + +1.3 1,628,631 - +0.2 1,628,631 - -1.0 1,628,793 + IAI46_07715 0.14 +0.6 1,628,814 + IAI46_07715 0.16 +1.3 1,628,918 + IAI46_07715 0.23 +0.7 1,628,919 - IAI46_07715 0.23 +1.1 1,628,926 + IAI46_07715 0.23 -0.2 1,628,927 - IAI46_07715 0.23 +0.3 1,628,930 - IAI46_07715 0.23 -0.6 1,628,993 - IAI46_07715 0.28 -0.2 1,628,993 - IAI46_07715 0.28 -0.2 1,629,157 + IAI46_07715 0.39 -1.7 1,629,158 - IAI46_07715 0.39 +0.6 1,629,421 + IAI46_07715 0.57 +0.9 1,629,421 + IAI46_07715 0.57 +0.3 1,629,422 - IAI46_07715 0.57 -0.8 1,629,422 - IAI46_07715 0.57 -0.9 1,629,458 + IAI46_07715 0.59 +1.1 1,629,596 + IAI46_07715 0.69 -0.3 1,629,597 - IAI46_07715 0.69 +0.5 1,629,685 + IAI46_07715 0.75 +1.3 1,629,685 + IAI46_07715 0.75 +0.6 1,629,685 + IAI46_07715 0.75 -0.2 1,629,686 - IAI46_07715 0.75 +0.6 1,629,686 - IAI46_07715 0.75 +1.0 1,629,686 - IAI46_07715 0.75 -0.4 1,629,701 + IAI46_07715 0.76 +0.2 1,629,701 + IAI46_07715 0.76 +0.4 1,629,950 - +0.6 1,629,988 - -0.6 1,630,000 + -0.3 1,630,020 - +0.2 1,630,054 + -0.2 1,630,059 - +1.2 1,630,079 + +0.3 1,630,079 + +0.8 1,630,080 - +0.7 1,630,117 + -0.7 1,630,151 + -0.9 1,630,151 + +0.3 1,630,179 - +0.3 1,630,209 + -0.8 1,630,210 - +1.5 1,630,210 - -0.0 1,630,211 + +0.2 1,630,211 + +0.0 1,630,212 - +1.2 1,630,212 - +0.4 1,630,260 - +0.4 1,630,260 - +1.4 1,630,270 + -0.7 1,630,270 + +0.3 1,630,270 + +0.3 1,630,270 + -0.0 1,630,271 - -0.1 1,630,275 + +0.6 1,630,276 - -0.6 1,630,276 - +0.3 1,630,361 + +0.5 1,630,362 - +0.1 1,630,362 - +0.1 1,630,391 - +0.8 1,630,454 - IAI46_07720 0.11 -0.8 1,630,561 + IAI46_07720 0.17 +0.4 1,630,562 - IAI46_07720 0.17 +0.8 1,630,562 - IAI46_07720 0.17 -0.6 1,630,562 - IAI46_07720 0.17 -0.9 1,630,627 + IAI46_07720 0.21 +1.1 1,630,680 + IAI46_07720 0.24 +0.5 1,630,681 - IAI46_07720 0.24 -0.4 1,630,734 + IAI46_07720 0.28 +0.5 1,630,735 - IAI46_07720 0.28 -0.6 1,630,886 - IAI46_07720 0.37 -0.8 1,630,962 + IAI46_07720 0.41 +1.8 1,630,963 - IAI46_07720 0.41 -0.2 1,630,984 + IAI46_07720 0.43 +0.8 1,630,985 - IAI46_07720 0.43 -1.1
Or see this region's nucleotide sequence