Strain Fitness in Serratia liquefaciens MT49 around IAI46_07715

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07710 and IAI46_07715 are separated by 20 nucleotidesIAI46_07715 and IAI46_07720 are separated by 219 nucleotides IAI46_07710: IAI46_07710 - transcriptional regulator BetI, at 1,627,967 to 1,628,563 _07710 IAI46_07715: IAI46_07715 - betaine-aldehyde dehydrogenase, at 1,628,584 to 1,630,056 _07715 IAI46_07720: IAI46_07720 - choline dehydrogenase, at 1,630,276 to 1,631,940 _07720 Position (kb) 1628 1629 1630 1631Strain fitness (log2 ratio) -2 -1 0 1 2at 1627.645 kb on + strandat 1627.645 kb on + strandat 1627.663 kb on + strandat 1627.664 kb on - strandat 1627.735 kb on - strandat 1627.875 kb on + strandat 1627.966 kb on + strandat 1628.010 kb on + strandat 1628.010 kb on + strandat 1628.146 kb on + strand, within IAI46_07710at 1628.146 kb on + strand, within IAI46_07710at 1628.154 kb on - strand, within IAI46_07710at 1628.333 kb on - strand, within IAI46_07710at 1628.390 kb on - strand, within IAI46_07710at 1628.525 kb on + strandat 1628.583 kb on + strandat 1628.584 kb on - strandat 1628.584 kb on - strandat 1628.600 kb on + strandat 1628.611 kb on + strandat 1628.613 kb on + strandat 1628.614 kb on - strandat 1628.617 kb on - strandat 1628.626 kb on + strandat 1628.626 kb on + strandat 1628.631 kb on - strandat 1628.631 kb on - strandat 1628.793 kb on + strand, within IAI46_07715at 1628.814 kb on + strand, within IAI46_07715at 1628.918 kb on + strand, within IAI46_07715at 1628.919 kb on - strand, within IAI46_07715at 1628.926 kb on + strand, within IAI46_07715at 1628.927 kb on - strand, within IAI46_07715at 1628.930 kb on - strand, within IAI46_07715at 1628.993 kb on - strand, within IAI46_07715at 1628.993 kb on - strand, within IAI46_07715at 1629.157 kb on + strand, within IAI46_07715at 1629.158 kb on - strand, within IAI46_07715at 1629.421 kb on + strand, within IAI46_07715at 1629.421 kb on + strand, within IAI46_07715at 1629.422 kb on - strand, within IAI46_07715at 1629.422 kb on - strand, within IAI46_07715at 1629.458 kb on + strand, within IAI46_07715at 1629.596 kb on + strand, within IAI46_07715at 1629.597 kb on - strand, within IAI46_07715at 1629.685 kb on + strand, within IAI46_07715at 1629.685 kb on + strand, within IAI46_07715at 1629.685 kb on + strand, within IAI46_07715at 1629.686 kb on - strand, within IAI46_07715at 1629.686 kb on - strand, within IAI46_07715at 1629.686 kb on - strand, within IAI46_07715at 1629.701 kb on + strand, within IAI46_07715at 1629.701 kb on + strand, within IAI46_07715at 1629.950 kb on - strandat 1629.988 kb on - strandat 1630.000 kb on + strandat 1630.020 kb on - strandat 1630.054 kb on + strandat 1630.059 kb on - strandat 1630.079 kb on + strandat 1630.079 kb on + strandat 1630.080 kb on - strandat 1630.117 kb on + strandat 1630.151 kb on + strandat 1630.151 kb on + strandat 1630.179 kb on - strandat 1630.209 kb on + strandat 1630.210 kb on - strandat 1630.210 kb on - strandat 1630.211 kb on + strandat 1630.211 kb on + strandat 1630.212 kb on - strandat 1630.212 kb on - strandat 1630.260 kb on - strandat 1630.260 kb on - strandat 1630.270 kb on + strandat 1630.270 kb on + strandat 1630.270 kb on + strandat 1630.270 kb on + strandat 1630.271 kb on - strandat 1630.275 kb on + strandat 1630.276 kb on - strandat 1630.276 kb on - strandat 1630.361 kb on + strandat 1630.362 kb on - strandat 1630.362 kb on - strandat 1630.391 kb on - strandat 1630.454 kb on - strand, within IAI46_07720at 1630.561 kb on + strand, within IAI46_07720at 1630.562 kb on - strand, within IAI46_07720at 1630.562 kb on - strand, within IAI46_07720at 1630.562 kb on - strand, within IAI46_07720at 1630.627 kb on + strand, within IAI46_07720at 1630.680 kb on + strand, within IAI46_07720at 1630.681 kb on - strand, within IAI46_07720at 1630.734 kb on + strand, within IAI46_07720at 1630.735 kb on - strand, within IAI46_07720at 1630.886 kb on - strand, within IAI46_07720at 1630.962 kb on + strand, within IAI46_07720at 1630.963 kb on - strand, within IAI46_07720at 1630.984 kb on + strand, within IAI46_07720at 1630.985 kb on - strand, within IAI46_07720

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,627,645 + -1.6
1,627,645 + -0.2
1,627,663 + +0.5
1,627,664 - +0.2
1,627,735 - -0.9
1,627,875 + +0.5
1,627,966 + +0.5
1,628,010 + +1.8
1,628,010 + +0.2
1,628,146 + IAI46_07710 0.30 +1.2
1,628,146 + IAI46_07710 0.30 +0.1
1,628,154 - IAI46_07710 0.31 -0.3
1,628,333 - IAI46_07710 0.61 -1.9
1,628,390 - IAI46_07710 0.71 +0.7
1,628,525 + -0.5
1,628,583 + -0.1
1,628,584 - -0.6
1,628,584 - +0.6
1,628,600 + +0.3
1,628,611 + -0.1
1,628,613 + -1.3
1,628,614 - +1.2
1,628,617 - +0.8
1,628,626 + +0.1
1,628,626 + +1.3
1,628,631 - +0.2
1,628,631 - -1.0
1,628,793 + IAI46_07715 0.14 +0.6
1,628,814 + IAI46_07715 0.16 +1.3
1,628,918 + IAI46_07715 0.23 +0.7
1,628,919 - IAI46_07715 0.23 +1.1
1,628,926 + IAI46_07715 0.23 -0.2
1,628,927 - IAI46_07715 0.23 +0.3
1,628,930 - IAI46_07715 0.23 -0.6
1,628,993 - IAI46_07715 0.28 -0.2
1,628,993 - IAI46_07715 0.28 -0.2
1,629,157 + IAI46_07715 0.39 -1.7
1,629,158 - IAI46_07715 0.39 +0.6
1,629,421 + IAI46_07715 0.57 +0.9
1,629,421 + IAI46_07715 0.57 +0.3
1,629,422 - IAI46_07715 0.57 -0.8
1,629,422 - IAI46_07715 0.57 -0.9
1,629,458 + IAI46_07715 0.59 +1.1
1,629,596 + IAI46_07715 0.69 -0.3
1,629,597 - IAI46_07715 0.69 +0.5
1,629,685 + IAI46_07715 0.75 +1.3
1,629,685 + IAI46_07715 0.75 +0.6
1,629,685 + IAI46_07715 0.75 -0.2
1,629,686 - IAI46_07715 0.75 +0.6
1,629,686 - IAI46_07715 0.75 +1.0
1,629,686 - IAI46_07715 0.75 -0.4
1,629,701 + IAI46_07715 0.76 +0.2
1,629,701 + IAI46_07715 0.76 +0.4
1,629,950 - +0.6
1,629,988 - -0.6
1,630,000 + -0.3
1,630,020 - +0.2
1,630,054 + -0.2
1,630,059 - +1.2
1,630,079 + +0.3
1,630,079 + +0.8
1,630,080 - +0.7
1,630,117 + -0.7
1,630,151 + -0.9
1,630,151 + +0.3
1,630,179 - +0.3
1,630,209 + -0.8
1,630,210 - +1.5
1,630,210 - -0.0
1,630,211 + +0.2
1,630,211 + +0.0
1,630,212 - +1.2
1,630,212 - +0.4
1,630,260 - +0.4
1,630,260 - +1.4
1,630,270 + -0.7
1,630,270 + +0.3
1,630,270 + +0.3
1,630,270 + -0.0
1,630,271 - -0.1
1,630,275 + +0.6
1,630,276 - -0.6
1,630,276 - +0.3
1,630,361 + +0.5
1,630,362 - +0.1
1,630,362 - +0.1
1,630,391 - +0.8
1,630,454 - IAI46_07720 0.11 -0.8
1,630,561 + IAI46_07720 0.17 +0.4
1,630,562 - IAI46_07720 0.17 +0.8
1,630,562 - IAI46_07720 0.17 -0.6
1,630,562 - IAI46_07720 0.17 -0.9
1,630,627 + IAI46_07720 0.21 +1.1
1,630,680 + IAI46_07720 0.24 +0.5
1,630,681 - IAI46_07720 0.24 -0.4
1,630,734 + IAI46_07720 0.28 +0.5
1,630,735 - IAI46_07720 0.28 -0.6
1,630,886 - IAI46_07720 0.37 -0.8
1,630,962 + IAI46_07720 0.41 +1.8
1,630,963 - IAI46_07720 0.41 -0.2
1,630,984 + IAI46_07720 0.43 +0.8
1,630,985 - IAI46_07720 0.43 -1.1

Or see this region's nucleotide sequence