Strain Fitness in Serratia liquefaciens MT49 around IAI46_05035

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05030 and IAI46_05035 are separated by 139 nucleotidesIAI46_05035 and IAI46_05040 are separated by 155 nucleotidesIAI46_05040 and IAI46_05045 are separated by 35 nucleotides IAI46_05030: IAI46_05030 - peptidylprolyl isomerase, at 1,085,068 to 1,086,951 _05030 IAI46_05035: IAI46_05035 - helix-hairpin-helix domain-containing protein, at 1,087,091 to 1,087,480 _05035 IAI46_05040: IAI46_05040 - YbgC/FadM family acyl-CoA thioesterase, at 1,087,636 to 1,088,049 _05040 IAI46_05045: IAI46_05045 - 7-cyano-7-deazaguanine synthase QueC, at 1,088,085 to 1,088,783 _05045 Position (kb) 1087 1088Strain fitness (log2 ratio) -2 -1 0 1 2at 1086.122 kb on + strand, within IAI46_05030at 1086.123 kb on - strand, within IAI46_05030at 1086.221 kb on - strand, within IAI46_05030at 1086.434 kb on + strand, within IAI46_05030at 1086.742 kb on + strand, within IAI46_05030at 1086.773 kb on + strandat 1086.774 kb on - strandat 1086.835 kb on + strandat 1086.900 kb on + strandat 1087.086 kb on - strandat 1087.086 kb on - strandat 1087.086 kb on - strandat 1087.399 kb on + strand, within IAI46_05035at 1087.400 kb on - strand, within IAI46_05035at 1087.481 kb on + strandat 1087.485 kb on + strandat 1087.485 kb on + strandat 1087.506 kb on + strandat 1087.507 kb on - strandat 1087.548 kb on + strandat 1087.549 kb on - strandat 1087.608 kb on - strandat 1087.608 kb on - strandat 1087.635 kb on + strandat 1087.667 kb on - strandat 1087.692 kb on + strand, within IAI46_05040at 1087.800 kb on + strand, within IAI46_05040at 1087.800 kb on + strand, within IAI46_05040at 1087.801 kb on - strand, within IAI46_05040at 1087.801 kb on - strand, within IAI46_05040at 1087.816 kb on + strand, within IAI46_05040at 1088.144 kb on - strandat 1088.216 kb on - strand, within IAI46_05045at 1088.216 kb on - strand, within IAI46_05045at 1088.257 kb on + strand, within IAI46_05045at 1088.257 kb on + strand, within IAI46_05045at 1088.257 kb on + strand, within IAI46_05045at 1088.257 kb on + strand, within IAI46_05045at 1088.258 kb on - strand, within IAI46_05045at 1088.258 kb on - strand, within IAI46_05045at 1088.258 kb on - strand, within IAI46_05045at 1088.258 kb on - strand, within IAI46_05045at 1088.258 kb on - strand, within IAI46_05045at 1088.258 kb on - strand, within IAI46_05045at 1088.389 kb on + strand, within IAI46_05045at 1088.452 kb on + strand, within IAI46_05045at 1088.452 kb on + strand, within IAI46_05045at 1088.453 kb on - strand, within IAI46_05045at 1088.453 kb on - strand, within IAI46_05045at 1088.453 kb on - strand, within IAI46_05045

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,086,122 + IAI46_05030 0.56 +0.1
1,086,123 - IAI46_05030 0.56 +1.0
1,086,221 - IAI46_05030 0.61 +0.5
1,086,434 + IAI46_05030 0.73 +0.3
1,086,742 + IAI46_05030 0.89 +0.1
1,086,773 + +2.2
1,086,774 - +0.0
1,086,835 + +0.5
1,086,900 + +0.7
1,087,086 - -1.0
1,087,086 - +1.1
1,087,086 - +0.4
1,087,399 + IAI46_05035 0.79 +0.1
1,087,400 - IAI46_05035 0.79 -0.1
1,087,481 + +0.6
1,087,485 + -1.6
1,087,485 + -0.4
1,087,506 + +0.0
1,087,507 - -0.5
1,087,548 + -2.3
1,087,549 - +0.2
1,087,608 - +0.5
1,087,608 - +0.8
1,087,635 + +0.5
1,087,667 - +1.2
1,087,692 + IAI46_05040 0.14 +0.3
1,087,800 + IAI46_05040 0.40 +0.6
1,087,800 + IAI46_05040 0.40 +0.3
1,087,801 - IAI46_05040 0.40 -0.2
1,087,801 - IAI46_05040 0.40 -0.4
1,087,816 + IAI46_05040 0.43 +0.4
1,088,144 - +0.7
1,088,216 - IAI46_05045 0.19 +1.1
1,088,216 - IAI46_05045 0.19 +0.7
1,088,257 + IAI46_05045 0.25 -1.7
1,088,257 + IAI46_05045 0.25 -1.1
1,088,257 + IAI46_05045 0.25 -0.3
1,088,257 + IAI46_05045 0.25 -1.0
1,088,258 - IAI46_05045 0.25 +0.6
1,088,258 - IAI46_05045 0.25 -1.3
1,088,258 - IAI46_05045 0.25 +0.2
1,088,258 - IAI46_05045 0.25 +0.4
1,088,258 - IAI46_05045 0.25 +0.8
1,088,258 - IAI46_05045 0.25 -1.3
1,088,389 + IAI46_05045 0.43 -0.9
1,088,452 + IAI46_05045 0.53 -0.3
1,088,452 + IAI46_05045 0.53 +0.4
1,088,453 - IAI46_05045 0.53 +0.5
1,088,453 - IAI46_05045 0.53 -0.1
1,088,453 - IAI46_05045 0.53 +0.2

Or see this region's nucleotide sequence