Strain Fitness in Serratia liquefaciens MT49 around IAI46_04750

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04740 and IAI46_04745 overlap by 1 nucleotidesIAI46_04745 and IAI46_04750 overlap by 26 nucleotidesIAI46_04750 and IAI46_04755 are separated by 211 nucleotides IAI46_04740: IAI46_04740 - ketose 1,6-bisphosphate aldolase, at 1,016,222 to 1,017,082 _04740 IAI46_04745: IAI46_04745 - carbohydrate kinase family protein, at 1,017,082 to 1,018,095 _04745 IAI46_04750: IAI46_04750 - response regulator transcription factor, at 1,018,070 to 1,018,810 _04750 IAI46_04755: IAI46_04755 - fructokinase, at 1,019,022 to 1,019,930 _04755 Position (kb) 1018 1019Strain fitness (log2 ratio) -2 -1 0 1 2at 1017.213 kb on + strand, within IAI46_04745at 1017.213 kb on + strand, within IAI46_04745at 1017.214 kb on - strand, within IAI46_04745at 1017.301 kb on - strand, within IAI46_04745at 1017.499 kb on + strand, within IAI46_04745at 1018.029 kb on + strandat 1018.201 kb on + strand, within IAI46_04750at 1018.266 kb on - strand, within IAI46_04750at 1018.283 kb on + strand, within IAI46_04750at 1018.306 kb on - strand, within IAI46_04750at 1018.509 kb on + strand, within IAI46_04750at 1018.510 kb on - strand, within IAI46_04750at 1018.510 kb on - strand, within IAI46_04750at 1018.613 kb on + strand, within IAI46_04750at 1018.613 kb on + strand, within IAI46_04750at 1018.614 kb on - strand, within IAI46_04750at 1018.724 kb on + strand, within IAI46_04750at 1018.724 kb on + strand, within IAI46_04750at 1018.725 kb on - strand, within IAI46_04750at 1018.725 kb on - strand, within IAI46_04750at 1018.725 kb on - strand, within IAI46_04750at 1018.796 kb on + strandat 1018.796 kb on + strandat 1018.828 kb on + strandat 1018.846 kb on + strandat 1018.852 kb on + strandat 1018.852 kb on + strandat 1018.977 kb on + strandat 1018.977 kb on + strandat 1018.977 kb on + strandat 1018.978 kb on - strandat 1018.983 kb on - strandat 1018.983 kb on - strandat 1018.989 kb on + strandat 1018.990 kb on - strandat 1018.990 kb on - strandat 1018.990 kb on - strandat 1019.106 kb on - strandat 1019.106 kb on - strandat 1019.127 kb on + strand, within IAI46_04755at 1019.180 kb on + strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.408 kb on + strand, within IAI46_04755at 1019.409 kb on - strand, within IAI46_04755at 1019.550 kb on + strand, within IAI46_04755at 1019.550 kb on + strand, within IAI46_04755at 1019.550 kb on + strand, within IAI46_04755at 1019.550 kb on + strand, within IAI46_04755at 1019.551 kb on - strand, within IAI46_04755at 1019.551 kb on - strand, within IAI46_04755at 1019.551 kb on - strand, within IAI46_04755at 1019.571 kb on - strand, within IAI46_04755at 1019.582 kb on + strand, within IAI46_04755at 1019.582 kb on + strand, within IAI46_04755at 1019.744 kb on + strand, within IAI46_04755at 1019.745 kb on - strand, within IAI46_04755at 1019.780 kb on + strand, within IAI46_04755at 1019.803 kb on - strand, within IAI46_04755

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,017,213 + IAI46_04745 0.13 +0.9
1,017,213 + IAI46_04745 0.13 +0.2
1,017,214 - IAI46_04745 0.13 +0.4
1,017,301 - IAI46_04745 0.22 -0.1
1,017,499 + IAI46_04745 0.41 +0.7
1,018,029 + +0.8
1,018,201 + IAI46_04750 0.18 +0.1
1,018,266 - IAI46_04750 0.26 +0.7
1,018,283 + IAI46_04750 0.29 +0.2
1,018,306 - IAI46_04750 0.32 +0.8
1,018,509 + IAI46_04750 0.59 +1.1
1,018,510 - IAI46_04750 0.59 +0.5
1,018,510 - IAI46_04750 0.59 +0.1
1,018,613 + IAI46_04750 0.73 -0.8
1,018,613 + IAI46_04750 0.73 -0.1
1,018,614 - IAI46_04750 0.73 -0.4
1,018,724 + IAI46_04750 0.88 -0.1
1,018,724 + IAI46_04750 0.88 -0.4
1,018,725 - IAI46_04750 0.88 +1.8
1,018,725 - IAI46_04750 0.88 +0.1
1,018,725 - IAI46_04750 0.88 +0.4
1,018,796 + -1.7
1,018,796 + +0.8
1,018,828 + +0.6
1,018,846 + +0.5
1,018,852 + -0.1
1,018,852 + +0.1
1,018,977 + -0.3
1,018,977 + -0.3
1,018,977 + +1.7
1,018,978 - -0.7
1,018,983 - +0.9
1,018,983 - -0.6
1,018,989 + -0.3
1,018,990 - +0.3
1,018,990 - +1.5
1,018,990 - +0.2
1,019,106 - +0.2
1,019,106 - +1.3
1,019,127 + IAI46_04755 0.12 -1.0
1,019,180 + IAI46_04755 0.17 -0.2
1,019,233 - IAI46_04755 0.23 -2.7
1,019,233 - IAI46_04755 0.23 -2.0
1,019,233 - IAI46_04755 0.23 +0.5
1,019,233 - IAI46_04755 0.23 -0.2
1,019,233 - IAI46_04755 0.23 +1.6
1,019,408 + IAI46_04755 0.42 -0.4
1,019,409 - IAI46_04755 0.43 +0.3
1,019,550 + IAI46_04755 0.58 -0.1
1,019,550 + IAI46_04755 0.58 +0.3
1,019,550 + IAI46_04755 0.58 +0.4
1,019,550 + IAI46_04755 0.58 -0.1
1,019,551 - IAI46_04755 0.58 -0.5
1,019,551 - IAI46_04755 0.58 +0.4
1,019,551 - IAI46_04755 0.58 -0.9
1,019,571 - IAI46_04755 0.60 -0.5
1,019,582 + IAI46_04755 0.62 +0.9
1,019,582 + IAI46_04755 0.62 -0.7
1,019,744 + IAI46_04755 0.79 +1.6
1,019,745 - IAI46_04755 0.80 +0.7
1,019,780 + IAI46_04755 0.83 +0.3
1,019,803 - IAI46_04755 0.86 -0.4

Or see this region's nucleotide sequence