Strain Fitness in Serratia liquefaciens MT49 around IAI46_02655

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02650 and IAI46_02655 are separated by 134 nucleotidesIAI46_02655 and IAI46_02660 are separated by 266 nucleotides IAI46_02650: IAI46_02650 - LysR family transcriptional regulator, at 572,630 to 573,559 _02650 IAI46_02655: IAI46_02655 - iron-containing alcohol dehydrogenase, at 573,694 to 574,821 _02655 IAI46_02660: IAI46_02660 - response regulator transcription factor, at 575,088 to 575,846 _02660 Position (kb) 573 574 575Strain fitness (log2 ratio) -2 -1 0 1at 572.695 kb on - strandat 572.698 kb on + strandat 572.749 kb on + strand, within IAI46_02650at 572.749 kb on + strand, within IAI46_02650at 572.750 kb on - strand, within IAI46_02650at 572.776 kb on + strand, within IAI46_02650at 572.776 kb on + strand, within IAI46_02650at 572.862 kb on + strand, within IAI46_02650at 572.862 kb on + strand, within IAI46_02650at 572.862 kb on + strand, within IAI46_02650at 572.863 kb on - strand, within IAI46_02650at 572.863 kb on - strand, within IAI46_02650at 572.863 kb on - strand, within IAI46_02650at 572.864 kb on + strand, within IAI46_02650at 572.864 kb on + strand, within IAI46_02650at 572.865 kb on - strand, within IAI46_02650at 572.865 kb on - strand, within IAI46_02650at 572.865 kb on - strand, within IAI46_02650at 572.865 kb on - strand, within IAI46_02650at 572.865 kb on - strand, within IAI46_02650at 573.016 kb on - strand, within IAI46_02650at 573.054 kb on - strand, within IAI46_02650at 573.070 kb on + strand, within IAI46_02650at 573.070 kb on + strand, within IAI46_02650at 573.116 kb on - strand, within IAI46_02650at 573.144 kb on + strand, within IAI46_02650at 573.144 kb on + strand, within IAI46_02650at 573.144 kb on + strand, within IAI46_02650at 573.149 kb on + strand, within IAI46_02650at 573.151 kb on + strand, within IAI46_02650at 573.159 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.180 kb on + strand, within IAI46_02650at 573.181 kb on - strand, within IAI46_02650at 573.182 kb on + strand, within IAI46_02650at 573.182 kb on + strand, within IAI46_02650at 573.183 kb on - strand, within IAI46_02650at 573.183 kb on - strand, within IAI46_02650at 573.183 kb on - strand, within IAI46_02650at 573.225 kb on + strand, within IAI46_02650at 573.225 kb on + strand, within IAI46_02650at 573.229 kb on + strand, within IAI46_02650at 573.230 kb on - strand, within IAI46_02650at 573.230 kb on - strand, within IAI46_02650at 573.268 kb on - strand, within IAI46_02650at 573.272 kb on + strand, within IAI46_02650at 573.273 kb on - strand, within IAI46_02650at 573.312 kb on + strand, within IAI46_02650at 573.312 kb on + strand, within IAI46_02650at 573.313 kb on - strand, within IAI46_02650at 573.313 kb on - strand, within IAI46_02650at 573.313 kb on - strand, within IAI46_02650at 573.313 kb on - strand, within IAI46_02650at 573.358 kb on - strand, within IAI46_02650at 573.374 kb on + strand, within IAI46_02650at 573.375 kb on - strand, within IAI46_02650at 573.375 kb on - strand, within IAI46_02650at 573.375 kb on - strand, within IAI46_02650at 573.399 kb on - strand, within IAI46_02650at 573.564 kb on + strandat 573.565 kb on - strandat 573.565 kb on - strandat 573.688 kb on - strandat 573.689 kb on + strandat 573.689 kb on + strandat 573.690 kb on - strandat 573.691 kb on + strandat 573.746 kb on + strandat 573.747 kb on - strandat 573.747 kb on - strandat 573.856 kb on - strand, within IAI46_02655at 573.856 kb on - strand, within IAI46_02655at 573.856 kb on - strand, within IAI46_02655at 573.856 kb on - strand, within IAI46_02655at 574.091 kb on + strand, within IAI46_02655at 574.092 kb on - strand, within IAI46_02655at 574.092 kb on - strand, within IAI46_02655at 574.105 kb on - strand, within IAI46_02655at 574.217 kb on + strand, within IAI46_02655at 574.218 kb on - strand, within IAI46_02655at 574.218 kb on - strand, within IAI46_02655at 574.256 kb on + strand, within IAI46_02655at 574.257 kb on - strand, within IAI46_02655at 574.329 kb on + strand, within IAI46_02655at 574.476 kb on + strand, within IAI46_02655at 574.477 kb on - strand, within IAI46_02655at 574.478 kb on + strand, within IAI46_02655at 574.479 kb on - strand, within IAI46_02655at 574.558 kb on + strand, within IAI46_02655at 574.570 kb on + strand, within IAI46_02655at 574.571 kb on - strand, within IAI46_02655at 574.571 kb on - strand, within IAI46_02655at 574.603 kb on + strand, within IAI46_02655at 574.603 kb on + strand, within IAI46_02655at 574.604 kb on - strand, within IAI46_02655at 574.604 kb on - strand, within IAI46_02655at 574.604 kb on - strand, within IAI46_02655at 574.682 kb on + strand, within IAI46_02655at 574.714 kb on - strandat 574.714 kb on - strandat 574.853 kb on + strandat 574.853 kb on + strandat 574.853 kb on + strandat 574.854 kb on - strandat 574.854 kb on - strandat 574.854 kb on - strandat 574.854 kb on - strandat 574.911 kb on + strandat 574.912 kb on - strandat 574.913 kb on + strandat 574.913 kb on + strandat 574.914 kb on - strandat 574.914 kb on - strandat 574.914 kb on - strandat 574.916 kb on + strandat 574.970 kb on + strandat 574.977 kb on + strandat 575.005 kb on + strandat 575.005 kb on + strandat 575.005 kb on + strandat 575.006 kb on - strandat 575.006 kb on - strandat 575.022 kb on - strandat 575.066 kb on + strandat 575.094 kb on - strandat 575.149 kb on - strandat 575.193 kb on - strand, within IAI46_02660at 575.205 kb on + strand, within IAI46_02660at 575.283 kb on + strand, within IAI46_02660at 575.298 kb on + strand, within IAI46_02660at 575.299 kb on - strand, within IAI46_02660at 575.299 kb on - strand, within IAI46_02660at 575.299 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.390 kb on + strand, within IAI46_02660at 575.391 kb on - strand, within IAI46_02660at 575.397 kb on + strand, within IAI46_02660at 575.397 kb on + strand, within IAI46_02660at 575.398 kb on - strand, within IAI46_02660at 575.398 kb on - strand, within IAI46_02660at 575.398 kb on - strand, within IAI46_02660at 575.398 kb on - strand, within IAI46_02660at 575.400 kb on + strand, within IAI46_02660at 575.674 kb on + strand, within IAI46_02660at 575.769 kb on + strand, within IAI46_02660at 575.769 kb on + strand, within IAI46_02660at 575.770 kb on - strand, within IAI46_02660

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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572,695 - -0.4
572,698 + -0.0
572,749 + IAI46_02650 0.13 -0.0
572,749 + IAI46_02650 0.13 -0.1
572,750 - IAI46_02650 0.13 -0.2
572,776 + IAI46_02650 0.16 -0.4
572,776 + IAI46_02650 0.16 +0.1
572,862 + IAI46_02650 0.25 +0.8
572,862 + IAI46_02650 0.25 +0.1
572,862 + IAI46_02650 0.25 +0.6
572,863 - IAI46_02650 0.25 -0.9
572,863 - IAI46_02650 0.25 +0.6
572,863 - IAI46_02650 0.25 +1.7
572,864 + IAI46_02650 0.25 -1.9
572,864 + IAI46_02650 0.25 -1.2
572,865 - IAI46_02650 0.25 +0.7
572,865 - IAI46_02650 0.25 +0.3
572,865 - IAI46_02650 0.25 +1.2
572,865 - IAI46_02650 0.25 +0.5
572,865 - IAI46_02650 0.25 -0.9
573,016 - IAI46_02650 0.42 -0.7
573,054 - IAI46_02650 0.46 +0.1
573,070 + IAI46_02650 0.47 -0.4
573,070 + IAI46_02650 0.47 +1.1
573,116 - IAI46_02650 0.52 -1.1
573,144 + IAI46_02650 0.55 +0.2
573,144 + IAI46_02650 0.55 -1.0
573,144 + IAI46_02650 0.55 +0.3
573,149 + IAI46_02650 0.56 +0.5
573,151 + IAI46_02650 0.56 +0.2
573,159 + IAI46_02650 0.57 +0.6
573,180 + IAI46_02650 0.59 -0.7
573,180 + IAI46_02650 0.59 -2.5
573,180 + IAI46_02650 0.59 -0.6
573,180 + IAI46_02650 0.59 -0.2
573,180 + IAI46_02650 0.59 -0.1
573,180 + IAI46_02650 0.59 +0.8
573,180 + IAI46_02650 0.59 -0.3
573,181 - IAI46_02650 0.59 +0.7
573,182 + IAI46_02650 0.59 +0.5
573,182 + IAI46_02650 0.59 +1.5
573,183 - IAI46_02650 0.59 -1.6
573,183 - IAI46_02650 0.59 +0.6
573,183 - IAI46_02650 0.59 +0.0
573,225 + IAI46_02650 0.64 +0.5
573,225 + IAI46_02650 0.64 -0.6
573,229 + IAI46_02650 0.64 -0.5
573,230 - IAI46_02650 0.65 +0.8
573,230 - IAI46_02650 0.65 +0.0
573,268 - IAI46_02650 0.69 +0.8
573,272 + IAI46_02650 0.69 +0.3
573,273 - IAI46_02650 0.69 -0.5
573,312 + IAI46_02650 0.73 +0.0
573,312 + IAI46_02650 0.73 +0.3
573,313 - IAI46_02650 0.73 +0.7
573,313 - IAI46_02650 0.73 -0.2
573,313 - IAI46_02650 0.73 +0.6
573,313 - IAI46_02650 0.73 +0.8
573,358 - IAI46_02650 0.78 +0.0
573,374 + IAI46_02650 0.80 +0.8
573,375 - IAI46_02650 0.80 +0.0
573,375 - IAI46_02650 0.80 +0.9
573,375 - IAI46_02650 0.80 +0.9
573,399 - IAI46_02650 0.83 +0.4
573,564 + -0.3
573,565 - -0.5
573,565 - +0.3
573,688 - +0.7
573,689 + +0.2
573,689 + -0.3
573,690 - +0.8
573,691 + +0.5
573,746 + +0.1
573,747 - +1.0
573,747 - -0.3
573,856 - IAI46_02655 0.14 -0.4
573,856 - IAI46_02655 0.14 -0.5
573,856 - IAI46_02655 0.14 +0.3
573,856 - IAI46_02655 0.14 +0.4
574,091 + IAI46_02655 0.35 +0.6
574,092 - IAI46_02655 0.35 -0.3
574,092 - IAI46_02655 0.35 -0.7
574,105 - IAI46_02655 0.36 +0.5
574,217 + IAI46_02655 0.46 -0.8
574,218 - IAI46_02655 0.46 +0.0
574,218 - IAI46_02655 0.46 +0.2
574,256 + IAI46_02655 0.50 -2.5
574,257 - IAI46_02655 0.50 +0.3
574,329 + IAI46_02655 0.56 +0.8
574,476 + IAI46_02655 0.69 +0.4
574,477 - IAI46_02655 0.69 +0.6
574,478 + IAI46_02655 0.70 -0.2
574,479 - IAI46_02655 0.70 +0.3
574,558 + IAI46_02655 0.77 +0.3
574,570 + IAI46_02655 0.78 +1.7
574,571 - IAI46_02655 0.78 +0.7
574,571 - IAI46_02655 0.78 -0.7
574,603 + IAI46_02655 0.81 -0.3
574,603 + IAI46_02655 0.81 +0.4
574,604 - IAI46_02655 0.81 +0.4
574,604 - IAI46_02655 0.81 -0.7
574,604 - IAI46_02655 0.81 +0.5
574,682 + IAI46_02655 0.88 -0.4
574,714 - +0.8
574,714 - -0.1
574,853 + +0.9
574,853 + -0.9
574,853 + +1.6
574,854 - +0.6
574,854 - +0.5
574,854 - -0.4
574,854 - -0.2
574,911 + +0.4
574,912 - +0.4
574,913 + -0.1
574,913 + +0.3
574,914 - -0.2
574,914 - +0.0
574,914 - -0.5
574,916 + +0.1
574,970 + -0.0
574,977 + +0.2
575,005 + +0.0
575,005 + +0.2
575,005 + +0.6
575,006 - -0.5
575,006 - -0.6
575,022 - -0.4
575,066 + +0.2
575,094 - +0.8
575,149 - +1.0
575,193 - IAI46_02660 0.14 +0.7
575,205 + IAI46_02660 0.15 -1.5
575,283 + IAI46_02660 0.26 +0.0
575,298 + IAI46_02660 0.28 +0.2
575,299 - IAI46_02660 0.28 -0.8
575,299 - IAI46_02660 0.28 -0.3
575,299 - IAI46_02660 0.28 +0.8
575,386 - IAI46_02660 0.39 +1.4
575,386 - IAI46_02660 0.39 +0.0
575,386 - IAI46_02660 0.39 -0.5
575,386 - IAI46_02660 0.39 +0.8
575,386 - IAI46_02660 0.39 -1.4
575,390 + IAI46_02660 0.40 +0.2
575,391 - IAI46_02660 0.40 -0.0
575,397 + IAI46_02660 0.41 +0.5
575,397 + IAI46_02660 0.41 +1.1
575,398 - IAI46_02660 0.41 +0.2
575,398 - IAI46_02660 0.41 +1.0
575,398 - IAI46_02660 0.41 -0.7
575,398 - IAI46_02660 0.41 -0.1
575,400 + IAI46_02660 0.41 +0.6
575,674 + IAI46_02660 0.77 +0.3
575,769 + IAI46_02660 0.90 +0.9
575,769 + IAI46_02660 0.90 +0.6
575,770 - IAI46_02660 0.90 -0.9

Or see this region's nucleotide sequence