Strain Fitness in Serratia liquefaciens MT49 around IAI46_01940

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01935 and IAI46_01940 are separated by 68 nucleotidesIAI46_01940 and IAI46_01945 overlap by 1 nucleotides IAI46_01935: IAI46_01935 - translation initiation factor IF-2, at 413,837 to 416,524 _01935 IAI46_01940: IAI46_01940 - 30S ribosome-binding factor RbfA, at 416,593 to 417,003 _01940 IAI46_01945: IAI46_01945 - tRNA pseudouridine(55) synthase TruB, at 417,003 to 417,947 _01945 Position (kb) 416 417 418Strain fitness (log2 ratio) -2 -1 0 1at 416.528 kb on + strandat 416.541 kb on + strandat 416.948 kb on + strand, within IAI46_01940at 417.001 kb on + strandat 417.001 kb on + strandat 417.002 kb on - strandat 417.032 kb on + strandat 417.032 kb on + strandat 417.098 kb on - strand, within IAI46_01945at 417.108 kb on + strand, within IAI46_01945at 417.108 kb on + strand, within IAI46_01945at 417.108 kb on + strand, within IAI46_01945at 417.109 kb on - strand, within IAI46_01945at 417.109 kb on - strand, within IAI46_01945at 417.110 kb on + strand, within IAI46_01945at 417.237 kb on - strand, within IAI46_01945at 417.263 kb on + strand, within IAI46_01945at 417.264 kb on - strand, within IAI46_01945at 417.379 kb on - strand, within IAI46_01945at 417.379 kb on - strand, within IAI46_01945at 417.394 kb on - strand, within IAI46_01945at 417.394 kb on - strand, within IAI46_01945at 417.411 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.418 kb on - strand, within IAI46_01945at 417.418 kb on - strand, within IAI46_01945at 417.418 kb on - strand, within IAI46_01945at 417.468 kb on + strand, within IAI46_01945at 417.469 kb on - strand, within IAI46_01945at 417.537 kb on + strand, within IAI46_01945at 417.537 kb on + strand, within IAI46_01945at 417.537 kb on + strand, within IAI46_01945at 417.538 kb on - strand, within IAI46_01945at 417.538 kb on - strand, within IAI46_01945at 417.625 kb on - strand, within IAI46_01945at 417.795 kb on - strand, within IAI46_01945at 417.795 kb on - strand, within IAI46_01945at 417.844 kb on + strand, within IAI46_01945at 417.844 kb on + strand, within IAI46_01945at 417.844 kb on + strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.848 kb on + strand, within IAI46_01945at 417.848 kb on + strand, within IAI46_01945at 417.848 kb on + strand, within IAI46_01945at 417.849 kb on - strand, within IAI46_01945at 417.890 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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416,528 + -1.3
416,541 + -0.6
416,948 + IAI46_01940 0.86 -0.0
417,001 + +0.7
417,001 + -1.2
417,002 - -0.1
417,032 + +0.1
417,032 + -0.3
417,098 - IAI46_01945 0.10 +0.2
417,108 + IAI46_01945 0.11 +0.6
417,108 + IAI46_01945 0.11 +0.7
417,108 + IAI46_01945 0.11 -0.1
417,109 - IAI46_01945 0.11 -0.9
417,109 - IAI46_01945 0.11 +0.1
417,110 + IAI46_01945 0.11 -0.1
417,237 - IAI46_01945 0.25 -0.2
417,263 + IAI46_01945 0.28 -1.0
417,264 - IAI46_01945 0.28 +0.6
417,379 - IAI46_01945 0.40 -0.3
417,379 - IAI46_01945 0.40 +0.0
417,394 - IAI46_01945 0.41 +0.1
417,394 - IAI46_01945 0.41 +0.3
417,411 + IAI46_01945 0.43 +0.6
417,417 + IAI46_01945 0.44 -0.1
417,417 + IAI46_01945 0.44 -0.2
417,417 + IAI46_01945 0.44 +0.1
417,417 + IAI46_01945 0.44 -0.2
417,417 + IAI46_01945 0.44 +0.2
417,417 + IAI46_01945 0.44 -0.3
417,418 - IAI46_01945 0.44 -0.5
417,418 - IAI46_01945 0.44 -0.4
417,418 - IAI46_01945 0.44 +0.6
417,468 + IAI46_01945 0.49 -1.1
417,469 - IAI46_01945 0.49 -2.6
417,537 + IAI46_01945 0.57 -0.5
417,537 + IAI46_01945 0.57 -1.2
417,537 + IAI46_01945 0.57 -0.0
417,538 - IAI46_01945 0.57 -0.4
417,538 - IAI46_01945 0.57 -0.7
417,625 - IAI46_01945 0.66 -0.8
417,795 - IAI46_01945 0.84 -0.6
417,795 - IAI46_01945 0.84 +0.4
417,844 + IAI46_01945 0.89 +0.4
417,844 + IAI46_01945 0.89 -1.5
417,844 + IAI46_01945 0.89 +0.9
417,845 - IAI46_01945 0.89 -0.4
417,845 - IAI46_01945 0.89 -0.4
417,845 - IAI46_01945 0.89 +0.4
417,845 - IAI46_01945 0.89 +0.2
417,845 - IAI46_01945 0.89 +0.1
417,845 - IAI46_01945 0.89 +0.6
417,845 - IAI46_01945 0.89 +0.4
417,845 - IAI46_01945 0.89 +0.3
417,848 + IAI46_01945 0.89 -0.2
417,848 + IAI46_01945 0.89 +0.9
417,848 + IAI46_01945 0.89 +1.3
417,849 - IAI46_01945 0.90 -0.3
417,890 + +1.0

Or see this region's nucleotide sequence