Strain Fitness in Serratia liquefaciens MT49 around IAI46_01125

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01120 and IAI46_01125 are separated by 168 nucleotidesIAI46_01125 and IAI46_01130 are separated by 10 nucleotides IAI46_01120: IAI46_01120 - NAD(P)H-flavin reductase, at 247,845 to 248,546 _01120 IAI46_01125: IAI46_01125 - acetyl-CoA C-acyltransferase FadA, at 248,715 to 249,878 _01125 IAI46_01130: IAI46_01130 - fatty acid oxidation complex subunit alpha FadB, at 249,889 to 252,078 _01130 Position (kb) 248 249 250Strain fitness (log2 ratio) -1 0 1 2at 247.728 kb on + strandat 247.728 kb on + strandat 247.728 kb on + strandat 247.728 kb on + strandat 247.736 kb on + strandat 247.784 kb on + strandat 247.784 kb on + strandat 247.784 kb on + strandat 247.793 kb on + strandat 247.793 kb on + strandat 247.793 kb on + strandat 247.794 kb on - strandat 247.852 kb on + strandat 247.852 kb on + strandat 247.876 kb on + strandat 247.950 kb on + strand, within IAI46_01120at 247.951 kb on - strand, within IAI46_01120at 248.022 kb on + strand, within IAI46_01120at 248.023 kb on - strand, within IAI46_01120at 248.024 kb on + strand, within IAI46_01120at 248.024 kb on + strand, within IAI46_01120at 248.194 kb on - strand, within IAI46_01120at 248.194 kb on - strand, within IAI46_01120at 248.243 kb on + strand, within IAI46_01120at 248.249 kb on + strand, within IAI46_01120at 248.250 kb on - strand, within IAI46_01120at 248.250 kb on - strand, within IAI46_01120at 248.250 kb on - strand, within IAI46_01120at 248.253 kb on + strand, within IAI46_01120at 248.254 kb on - strand, within IAI46_01120at 248.401 kb on + strand, within IAI46_01120at 248.414 kb on - strand, within IAI46_01120at 248.439 kb on + strand, within IAI46_01120at 248.440 kb on - strand, within IAI46_01120at 248.441 kb on + strand, within IAI46_01120at 248.442 kb on - strand, within IAI46_01120at 248.544 kb on + strandat 248.545 kb on - strandat 248.545 kb on - strandat 248.545 kb on - strandat 248.618 kb on + strandat 248.619 kb on - strandat 248.648 kb on + strandat 248.648 kb on + strandat 248.658 kb on - strandat 248.658 kb on - strandat 248.706 kb on + strandat 248.707 kb on - strandat 248.707 kb on - strandat 248.716 kb on + strandat 248.716 kb on + strandat 248.716 kb on + strandat 248.717 kb on - strandat 248.759 kb on + strandat 248.759 kb on + strandat 248.759 kb on + strandat 248.760 kb on - strandat 248.760 kb on - strandat 248.819 kb on + strandat 248.819 kb on + strandat 248.820 kb on - strandat 248.908 kb on - strand, within IAI46_01125at 248.908 kb on - strand, within IAI46_01125at 249.268 kb on + strand, within IAI46_01125at 249.268 kb on + strand, within IAI46_01125at 249.269 kb on - strand, within IAI46_01125at 249.329 kb on - strand, within IAI46_01125at 249.401 kb on + strand, within IAI46_01125at 249.401 kb on + strand, within IAI46_01125at 249.401 kb on + strand, within IAI46_01125at 249.402 kb on - strand, within IAI46_01125at 249.402 kb on - strand, within IAI46_01125at 249.408 kb on + strand, within IAI46_01125at 249.408 kb on + strand, within IAI46_01125at 249.408 kb on + strand, within IAI46_01125at 249.409 kb on - strand, within IAI46_01125at 249.409 kb on - strand, within IAI46_01125at 249.518 kb on + strand, within IAI46_01125at 249.518 kb on + strand, within IAI46_01125at 249.518 kb on + strand, within IAI46_01125at 249.518 kb on + strand, within IAI46_01125at 249.519 kb on - strand, within IAI46_01125at 249.519 kb on - strand, within IAI46_01125at 249.680 kb on + strand, within IAI46_01125at 249.681 kb on - strand, within IAI46_01125at 249.718 kb on + strand, within IAI46_01125at 249.849 kb on + strandat 249.850 kb on - strandat 249.863 kb on + strandat 249.864 kb on - strandat 249.864 kb on - strandat 249.868 kb on - strandat 249.868 kb on - strandat 249.882 kb on + strandat 249.883 kb on - strandat 249.942 kb on - strandat 249.942 kb on - strandat 249.942 kb on - strandat 249.951 kb on + strandat 249.952 kb on - strandat 249.990 kb on - strandat 249.990 kb on - strandat 250.031 kb on + strandat 250.032 kb on - strandat 250.059 kb on - strandat 250.067 kb on - strandat 250.067 kb on - strandat 250.305 kb on - strand, within IAI46_01130at 250.348 kb on - strand, within IAI46_01130at 250.365 kb on + strand, within IAI46_01130at 250.390 kb on - strand, within IAI46_01130at 250.464 kb on - strand, within IAI46_01130at 250.548 kb on + strand, within IAI46_01130at 250.623 kb on + strand, within IAI46_01130at 250.624 kb on - strand, within IAI46_01130at 250.640 kb on + strand, within IAI46_01130at 250.641 kb on - strand, within IAI46_01130at 250.659 kb on + strand, within IAI46_01130at 250.659 kb on + strand, within IAI46_01130at 250.659 kb on + strand, within IAI46_01130at 250.660 kb on - strand, within IAI46_01130at 250.660 kb on - strand, within IAI46_01130at 250.660 kb on - strand, within IAI46_01130at 250.696 kb on + strand, within IAI46_01130at 250.714 kb on + strand, within IAI46_01130at 250.797 kb on + strand, within IAI46_01130at 250.797 kb on + strand, within IAI46_01130at 250.797 kb on + strand, within IAI46_01130at 250.798 kb on - strand, within IAI46_01130

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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247,728 + -0.4
247,728 + +0.7
247,728 + +0.3
247,728 + +0.2
247,736 + +0.3
247,784 + -0.3
247,784 + +0.2
247,784 + +0.5
247,793 + +0.4
247,793 + +0.7
247,793 + +0.8
247,794 - +1.4
247,852 + +1.2
247,852 + +0.5
247,876 + +1.9
247,950 + IAI46_01120 0.15 +1.2
247,951 - IAI46_01120 0.15 +0.0
248,022 + IAI46_01120 0.25 -0.7
248,023 - IAI46_01120 0.25 +1.0
248,024 + IAI46_01120 0.25 +0.5
248,024 + IAI46_01120 0.25 +1.4
248,194 - IAI46_01120 0.50 +1.0
248,194 - IAI46_01120 0.50 +2.0
248,243 + IAI46_01120 0.57 +0.9
248,249 + IAI46_01120 0.58 -0.4
248,250 - IAI46_01120 0.58 +1.8
248,250 - IAI46_01120 0.58 +1.5
248,250 - IAI46_01120 0.58 +1.6
248,253 + IAI46_01120 0.58 +1.1
248,254 - IAI46_01120 0.58 +0.4
248,401 + IAI46_01120 0.79 +1.6
248,414 - IAI46_01120 0.81 +1.2
248,439 + IAI46_01120 0.85 +2.2
248,440 - IAI46_01120 0.85 +0.5
248,441 + IAI46_01120 0.85 +2.7
248,442 - IAI46_01120 0.85 +0.3
248,544 + -0.5
248,545 - -0.5
248,545 - -0.3
248,545 - +0.8
248,618 + -0.6
248,619 - +0.5
248,648 + +0.2
248,648 + +0.9
248,658 - +0.1
248,658 - -1.5
248,706 + +0.3
248,707 - +0.1
248,707 - -0.2
248,716 + -0.3
248,716 + -0.6
248,716 + -0.7
248,717 - +0.1
248,759 + +2.5
248,759 + +1.2
248,759 + +1.0
248,760 - -0.1
248,760 - -0.5
248,819 + +0.2
248,819 + -0.0
248,820 - +1.2
248,908 - IAI46_01125 0.17 +0.6
248,908 - IAI46_01125 0.17 -0.1
249,268 + IAI46_01125 0.48 -0.4
249,268 + IAI46_01125 0.48 +0.5
249,269 - IAI46_01125 0.48 -0.0
249,329 - IAI46_01125 0.53 +1.2
249,401 + IAI46_01125 0.59 -0.1
249,401 + IAI46_01125 0.59 -0.5
249,401 + IAI46_01125 0.59 +0.2
249,402 - IAI46_01125 0.59 +0.5
249,402 - IAI46_01125 0.59 -0.3
249,408 + IAI46_01125 0.60 -0.6
249,408 + IAI46_01125 0.60 -0.7
249,408 + IAI46_01125 0.60 +0.7
249,409 - IAI46_01125 0.60 -0.0
249,409 - IAI46_01125 0.60 +0.3
249,518 + IAI46_01125 0.69 +0.3
249,518 + IAI46_01125 0.69 +0.6
249,518 + IAI46_01125 0.69 +1.0
249,518 + IAI46_01125 0.69 +0.3
249,519 - IAI46_01125 0.69 +0.6
249,519 - IAI46_01125 0.69 -0.3
249,680 + IAI46_01125 0.83 -0.2
249,681 - IAI46_01125 0.83 +0.4
249,718 + IAI46_01125 0.86 +0.7
249,849 + +0.2
249,850 - +0.1
249,863 + +0.8
249,864 - -0.3
249,864 - -0.7
249,868 - +0.1
249,868 - -0.8
249,882 + +0.3
249,883 - -0.1
249,942 - +0.3
249,942 - +0.4
249,942 - +1.3
249,951 + -0.8
249,952 - +0.1
249,990 - +0.4
249,990 - +0.0
250,031 + +0.1
250,032 - +0.1
250,059 - +0.0
250,067 - -0.4
250,067 - +0.2
250,305 - IAI46_01130 0.19 +0.3
250,348 - IAI46_01130 0.21 +0.4
250,365 + IAI46_01130 0.22 +0.0
250,390 - IAI46_01130 0.23 +0.0
250,464 - IAI46_01130 0.26 +1.0
250,548 + IAI46_01130 0.30 +0.0
250,623 + IAI46_01130 0.34 -0.1
250,624 - IAI46_01130 0.34 +0.3
250,640 + IAI46_01130 0.34 +0.6
250,641 - IAI46_01130 0.34 -0.5
250,659 + IAI46_01130 0.35 -0.5
250,659 + IAI46_01130 0.35 +0.6
250,659 + IAI46_01130 0.35 -0.2
250,660 - IAI46_01130 0.35 +0.4
250,660 - IAI46_01130 0.35 +0.5
250,660 - IAI46_01130 0.35 +0.7
250,696 + IAI46_01130 0.37 -0.7
250,714 + IAI46_01130 0.38 -0.4
250,797 + IAI46_01130 0.41 -0.4
250,797 + IAI46_01130 0.41 -0.0
250,797 + IAI46_01130 0.41 -0.2
250,798 - IAI46_01130 0.42 -0.8

Or see this region's nucleotide sequence