Strain Fitness in Serratia liquefaciens MT49 around IAI46_01015

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01005 and IAI46_01010 overlap by 4 nucleotidesIAI46_01010 and IAI46_01015 are separated by 105 nucleotidesIAI46_01015 and IAI46_01020 overlap by 20 nucleotidesIAI46_01020 and IAI46_01025 are separated by 150 nucleotides IAI46_01005: IAI46_01005 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 224,904 to 225,980 _01005 IAI46_01010: IAI46_01010 - glycerophosphodiester phosphodiesterase, at 225,977 to 226,723 _01010 IAI46_01015: IAI46_01015 - AEC family transporter, at 226,829 to 227,785 _01015 IAI46_01020: IAI46_01020 - hypothetical protein, at 227,766 to 228,095 _01020 IAI46_01025: IAI46_01025 - DMT family transporter, at 228,246 to 229,109 _01025 Position (kb) 226 227 228Strain fitness (log2 ratio) -2 -1 0 1 2at 225.910 kb on + strandat 225.913 kb on - strandat 225.964 kb on + strandat 225.965 kb on - strandat 226.045 kb on + strandat 226.128 kb on + strand, within IAI46_01010at 226.209 kb on + strand, within IAI46_01010at 226.209 kb on + strand, within IAI46_01010at 226.234 kb on + strand, within IAI46_01010at 226.244 kb on + strand, within IAI46_01010at 226.244 kb on + strand, within IAI46_01010at 226.244 kb on + strand, within IAI46_01010at 226.261 kb on - strand, within IAI46_01010at 226.330 kb on + strand, within IAI46_01010at 226.330 kb on + strand, within IAI46_01010at 226.331 kb on - strand, within IAI46_01010at 226.331 kb on - strand, within IAI46_01010at 226.331 kb on - strand, within IAI46_01010at 226.331 kb on - strand, within IAI46_01010at 226.555 kb on + strand, within IAI46_01010at 226.555 kb on + strand, within IAI46_01010at 226.616 kb on + strand, within IAI46_01010at 226.617 kb on - strand, within IAI46_01010at 226.690 kb on - strandat 226.904 kb on + strandat 227.113 kb on + strand, within IAI46_01015at 227.114 kb on - strand, within IAI46_01015at 227.167 kb on + strand, within IAI46_01015at 227.168 kb on - strand, within IAI46_01015at 227.248 kb on + strand, within IAI46_01015at 227.279 kb on - strand, within IAI46_01015at 227.279 kb on - strand, within IAI46_01015at 227.341 kb on + strand, within IAI46_01015at 227.501 kb on + strand, within IAI46_01015at 227.663 kb on + strand, within IAI46_01015at 227.688 kb on + strand, within IAI46_01015at 227.688 kb on + strand, within IAI46_01015at 227.689 kb on - strand, within IAI46_01015at 227.689 kb on - strand, within IAI46_01015at 227.746 kb on + strandat 227.746 kb on + strandat 227.746 kb on + strandat 227.747 kb on - strandat 227.903 kb on + strand, within IAI46_01020at 227.903 kb on + strand, within IAI46_01020at 227.904 kb on - strand, within IAI46_01020at 227.904 kb on - strand, within IAI46_01020at 227.904 kb on - strand, within IAI46_01020at 227.907 kb on - strand, within IAI46_01020at 227.955 kb on - strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.963 kb on + strand, within IAI46_01020at 227.964 kb on - strand, within IAI46_01020at 228.073 kb on + strandat 228.074 kb on - strandat 228.085 kb on + strandat 228.085 kb on + strandat 228.086 kb on - strandat 228.114 kb on + strandat 228.115 kb on - strandat 228.118 kb on - strandat 228.170 kb on + strandat 228.171 kb on - strandat 228.208 kb on + strandat 228.231 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.264 kb on - strandat 228.266 kb on + strandat 228.266 kb on + strandat 228.266 kb on + strandat 228.267 kb on - strandat 228.267 kb on - strandat 228.267 kb on - strandat 228.306 kb on + strandat 228.306 kb on + strandat 228.307 kb on - strandat 228.423 kb on + strand, within IAI46_01025at 228.423 kb on + strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.448 kb on + strand, within IAI46_01025at 228.448 kb on + strand, within IAI46_01025at 228.448 kb on + strand, within IAI46_01025at 228.448 kb on + strand, within IAI46_01025at 228.449 kb on - strand, within IAI46_01025at 228.449 kb on - strand, within IAI46_01025at 228.449 kb on - strand, within IAI46_01025at 228.459 kb on + strand, within IAI46_01025at 228.459 kb on + strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.480 kb on + strand, within IAI46_01025at 228.480 kb on + strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.486 kb on + strand, within IAI46_01025at 228.486 kb on + strand, within IAI46_01025at 228.486 kb on + strand, within IAI46_01025at 228.487 kb on - strand, within IAI46_01025at 228.487 kb on - strand, within IAI46_01025at 228.487 kb on - strand, within IAI46_01025at 228.487 kb on - strand, within IAI46_01025at 228.516 kb on - strand, within IAI46_01025at 228.534 kb on + strand, within IAI46_01025at 228.535 kb on - strand, within IAI46_01025at 228.535 kb on - strand, within IAI46_01025at 228.550 kb on - strand, within IAI46_01025at 228.585 kb on + strand, within IAI46_01025at 228.585 kb on + strand, within IAI46_01025at 228.586 kb on - strand, within IAI46_01025at 228.586 kb on - strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.590 kb on - strand, within IAI46_01025at 228.590 kb on - strand, within IAI46_01025at 228.590 kb on - strand, within IAI46_01025at 228.602 kb on - strand, within IAI46_01025at 228.634 kb on - strand, within IAI46_01025at 228.774 kb on + strand, within IAI46_01025at 228.774 kb on + strand, within IAI46_01025at 228.775 kb on - strand, within IAI46_01025at 228.775 kb on - strand, within IAI46_01025

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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225,910 + -0.0
225,913 - +1.1
225,964 + -0.2
225,965 - -0.6
226,045 + -0.1
226,128 + IAI46_01010 0.20 +0.5
226,209 + IAI46_01010 0.31 -0.0
226,209 + IAI46_01010 0.31 -0.9
226,234 + IAI46_01010 0.34 -0.5
226,244 + IAI46_01010 0.36 -0.3
226,244 + IAI46_01010 0.36 +0.6
226,244 + IAI46_01010 0.36 -0.3
226,261 - IAI46_01010 0.38 -0.1
226,330 + IAI46_01010 0.47 -0.3
226,330 + IAI46_01010 0.47 +0.2
226,331 - IAI46_01010 0.47 -0.8
226,331 - IAI46_01010 0.47 +0.3
226,331 - IAI46_01010 0.47 +0.2
226,331 - IAI46_01010 0.47 +0.3
226,555 + IAI46_01010 0.77 +0.3
226,555 + IAI46_01010 0.77 -0.2
226,616 + IAI46_01010 0.86 -0.6
226,617 - IAI46_01010 0.86 +0.1
226,690 - +0.3
226,904 + +0.6
227,113 + IAI46_01015 0.30 +0.1
227,114 - IAI46_01015 0.30 -0.1
227,167 + IAI46_01015 0.35 -0.8
227,168 - IAI46_01015 0.35 -0.2
227,248 + IAI46_01015 0.44 +0.1
227,279 - IAI46_01015 0.47 -1.0
227,279 - IAI46_01015 0.47 +1.5
227,341 + IAI46_01015 0.54 +0.7
227,501 + IAI46_01015 0.70 +1.1
227,663 + IAI46_01015 0.87 -0.0
227,688 + IAI46_01015 0.90 -0.5
227,688 + IAI46_01015 0.90 +1.1
227,689 - IAI46_01015 0.90 +0.1
227,689 - IAI46_01015 0.90 -0.4
227,746 + +1.2
227,746 + +0.6
227,746 + +0.1
227,747 - -0.4
227,903 + IAI46_01020 0.42 -0.1
227,903 + IAI46_01020 0.42 -0.3
227,904 - IAI46_01020 0.42 +0.3
227,904 - IAI46_01020 0.42 +0.2
227,904 - IAI46_01020 0.42 -0.1
227,907 - IAI46_01020 0.43 +1.3
227,955 - IAI46_01020 0.57 -0.2
227,963 + IAI46_01020 0.60 +0.1
227,963 + IAI46_01020 0.60 +0.1
227,963 + IAI46_01020 0.60 +0.5
227,963 + IAI46_01020 0.60 +0.7
227,963 + IAI46_01020 0.60 -0.3
227,963 + IAI46_01020 0.60 -0.8
227,963 + IAI46_01020 0.60 -0.3
227,963 + IAI46_01020 0.60 +0.6
227,964 - IAI46_01020 0.60 -0.2
228,073 + -0.2
228,074 - -0.3
228,085 + -0.5
228,085 + +1.0
228,086 - -0.3
228,114 + -0.0
228,115 - -2.1
228,118 - -0.4
228,170 + -0.5
228,171 - -0.5
228,208 + +0.3
228,231 + +0.7
228,263 + +0.4
228,263 + +0.4
228,263 + +0.2
228,263 + +0.0
228,263 + +0.4
228,263 + +0.7
228,264 - +0.9
228,266 + -1.1
228,266 + +0.4
228,266 + +0.3
228,267 - -0.2
228,267 - +0.1
228,267 - +0.1
228,306 + +1.5
228,306 + +2.1
228,307 - -1.4
228,423 + IAI46_01025 0.20 +0.0
228,423 + IAI46_01025 0.20 +1.1
228,424 - IAI46_01025 0.21 -0.7
228,424 - IAI46_01025 0.21 -0.4
228,424 - IAI46_01025 0.21 +0.6
228,424 - IAI46_01025 0.21 +0.6
228,424 - IAI46_01025 0.21 -0.3
228,424 - IAI46_01025 0.21 -0.8
228,448 + IAI46_01025 0.23 -0.7
228,448 + IAI46_01025 0.23 -1.1
228,448 + IAI46_01025 0.23 +1.1
228,448 + IAI46_01025 0.23 -0.2
228,449 - IAI46_01025 0.23 -0.5
228,449 - IAI46_01025 0.23 -0.2
228,449 - IAI46_01025 0.23 -0.7
228,459 + IAI46_01025 0.25 +0.3
228,459 + IAI46_01025 0.25 -1.0
228,460 - IAI46_01025 0.25 -0.5
228,460 - IAI46_01025 0.25 -0.2
228,460 - IAI46_01025 0.25 -1.3
228,460 - IAI46_01025 0.25 +0.2
228,460 - IAI46_01025 0.25 -0.4
228,480 + IAI46_01025 0.27 -0.0
228,480 + IAI46_01025 0.27 +0.4
228,481 - IAI46_01025 0.27 -0.2
228,481 - IAI46_01025 0.27 +0.0
228,481 - IAI46_01025 0.27 +0.1
228,481 - IAI46_01025 0.27 +1.4
228,481 - IAI46_01025 0.27 +0.1
228,481 - IAI46_01025 0.27 +2.0
228,486 + IAI46_01025 0.28 +0.5
228,486 + IAI46_01025 0.28 +0.7
228,486 + IAI46_01025 0.28 +0.2
228,487 - IAI46_01025 0.28 +1.4
228,487 - IAI46_01025 0.28 -0.8
228,487 - IAI46_01025 0.28 +1.2
228,487 - IAI46_01025 0.28 -1.1
228,516 - IAI46_01025 0.31 -0.0
228,534 + IAI46_01025 0.33 -0.1
228,535 - IAI46_01025 0.33 +0.4
228,535 - IAI46_01025 0.33 +0.8
228,550 - IAI46_01025 0.35 -0.3
228,585 + IAI46_01025 0.39 +0.5
228,585 + IAI46_01025 0.39 +1.3
228,586 - IAI46_01025 0.39 +0.9
228,586 - IAI46_01025 0.39 -0.7
228,589 + IAI46_01025 0.40 +0.0
228,589 + IAI46_01025 0.40 +0.4
228,589 + IAI46_01025 0.40 +1.0
228,589 + IAI46_01025 0.40 +0.1
228,589 + IAI46_01025 0.40 -0.1
228,589 + IAI46_01025 0.40 +0.0
228,589 + IAI46_01025 0.40 -1.6
228,589 + IAI46_01025 0.40 +1.1
228,590 - IAI46_01025 0.40 -0.1
228,590 - IAI46_01025 0.40 +0.4
228,590 - IAI46_01025 0.40 -0.6
228,602 - IAI46_01025 0.41 -1.5
228,634 - IAI46_01025 0.45 -0.1
228,774 + IAI46_01025 0.61 +0.4
228,774 + IAI46_01025 0.61 -0.3
228,775 - IAI46_01025 0.61 -0.6
228,775 - IAI46_01025 0.61 +0.2

Or see this region's nucleotide sequence