Strain Fitness in Serratia liquefaciens MT49 around IAI46_00780

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00770 and IAI46_00775 are separated by 12 nucleotidesIAI46_00775 and IAI46_00780 are separated by 51 nucleotidesIAI46_00780 and IAI46_00785 are separated by 135 nucleotides IAI46_00770: IAI46_00770 - ATP-dependent DNA helicase RecQ, at 175,138 to 176,970 _00770 IAI46_00775: IAI46_00775 - threonine export protein RhtC, at 176,983 to 177,609 _00775 IAI46_00780: IAI46_00780 - homoserine/homoserine lactone efflux protein, at 177,661 to 178,281 _00780 IAI46_00785: IAI46_00785 - lysophospholipase L2, at 178,417 to 179,454 _00785 Position (kb) 177 178 179Strain fitness (log2 ratio) -2 -1 0 1at 176.735 kb on - strand, within IAI46_00770at 176.806 kb on + strandat 176.806 kb on + strandat 176.806 kb on + strandat 176.806 kb on + strandat 176.807 kb on - strandat 176.826 kb on + strandat 176.826 kb on + strandat 176.826 kb on + strandat 176.826 kb on + strandat 176.826 kb on + strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.968 kb on + strandat 176.968 kb on + strandat 176.968 kb on + strandat 176.969 kb on - strandat 176.969 kb on - strandat 176.969 kb on - strandat 176.978 kb on - strandat 177.201 kb on + strand, within IAI46_00775at 177.202 kb on - strand, within IAI46_00775at 177.202 kb on - strand, within IAI46_00775at 177.204 kb on + strand, within IAI46_00775at 177.204 kb on + strand, within IAI46_00775at 177.205 kb on - strand, within IAI46_00775at 177.205 kb on - strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.224 kb on - strand, within IAI46_00775at 177.224 kb on - strand, within IAI46_00775at 177.224 kb on - strand, within IAI46_00775at 177.224 kb on - strand, within IAI46_00775at 177.315 kb on + strand, within IAI46_00775at 177.333 kb on + strand, within IAI46_00775at 177.375 kb on + strand, within IAI46_00775at 177.379 kb on + strand, within IAI46_00775at 177.379 kb on + strand, within IAI46_00775at 177.380 kb on - strand, within IAI46_00775at 177.380 kb on - strand, within IAI46_00775at 177.526 kb on + strand, within IAI46_00775at 177.566 kb on + strandat 177.567 kb on - strandat 177.567 kb on - strandat 177.768 kb on + strand, within IAI46_00780at 177.822 kb on + strand, within IAI46_00780at 177.823 kb on - strand, within IAI46_00780at 177.823 kb on - strand, within IAI46_00780at 177.835 kb on + strand, within IAI46_00780at 177.836 kb on - strand, within IAI46_00780at 177.842 kb on + strand, within IAI46_00780at 177.981 kb on + strand, within IAI46_00780at 177.981 kb on + strand, within IAI46_00780at 177.982 kb on - strand, within IAI46_00780at 177.982 kb on - strand, within IAI46_00780at 178.037 kb on + strand, within IAI46_00780at 178.037 kb on + strand, within IAI46_00780at 178.256 kb on + strandat 178.256 kb on + strandat 178.257 kb on - strandat 178.349 kb on + strandat 178.349 kb on + strandat 178.350 kb on - strandat 178.354 kb on + strandat 178.354 kb on + strandat 178.360 kb on + strandat 178.360 kb on + strandat 178.361 kb on - strandat 178.429 kb on - strandat 178.562 kb on + strand, within IAI46_00785at 178.601 kb on + strand, within IAI46_00785at 178.602 kb on - strand, within IAI46_00785at 178.602 kb on - strand, within IAI46_00785at 178.629 kb on + strand, within IAI46_00785at 178.630 kb on - strand, within IAI46_00785at 178.634 kb on - strand, within IAI46_00785at 178.649 kb on - strand, within IAI46_00785at 178.685 kb on + strand, within IAI46_00785at 178.685 kb on + strand, within IAI46_00785at 178.686 kb on - strand, within IAI46_00785at 178.728 kb on + strand, within IAI46_00785at 178.748 kb on + strand, within IAI46_00785at 178.762 kb on + strand, within IAI46_00785at 178.930 kb on + strand, within IAI46_00785at 178.930 kb on + strand, within IAI46_00785at 178.931 kb on - strand, within IAI46_00785at 178.931 kb on - strand, within IAI46_00785at 178.931 kb on - strand, within IAI46_00785at 178.934 kb on + strand, within IAI46_00785at 178.939 kb on - strand, within IAI46_00785at 178.939 kb on - strand, within IAI46_00785at 179.002 kb on + strand, within IAI46_00785at 179.002 kb on + strand, within IAI46_00785at 179.002 kb on + strand, within IAI46_00785at 179.003 kb on - strand, within IAI46_00785at 179.005 kb on + strand, within IAI46_00785at 179.005 kb on + strand, within IAI46_00785at 179.006 kb on - strand, within IAI46_00785at 179.006 kb on - strand, within IAI46_00785at 179.006 kb on - strand, within IAI46_00785at 179.041 kb on + strand, within IAI46_00785at 179.098 kb on + strand, within IAI46_00785at 179.098 kb on + strand, within IAI46_00785at 179.138 kb on - strand, within IAI46_00785at 179.138 kb on - strand, within IAI46_00785at 179.176 kb on - strand, within IAI46_00785at 179.210 kb on + strand, within IAI46_00785

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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176,735 - IAI46_00770 0.87 +1.3
176,806 + -2.1
176,806 + -0.3
176,806 + +0.0
176,806 + +0.0
176,807 - +0.0
176,826 + +0.7
176,826 + +0.6
176,826 + +0.1
176,826 + +0.7
176,826 + -0.2
176,827 - +0.8
176,827 - +0.4
176,827 - +0.1
176,827 - -0.1
176,827 - -0.1
176,827 - -0.1
176,827 - +0.5
176,968 + +0.5
176,968 + -0.0
176,968 + +0.4
176,969 - -1.1
176,969 - -0.8
176,969 - -0.3
176,978 - +0.4
177,201 + IAI46_00775 0.35 +0.3
177,202 - IAI46_00775 0.35 +0.0
177,202 - IAI46_00775 0.35 +0.2
177,204 + IAI46_00775 0.35 +1.3
177,204 + IAI46_00775 0.35 +1.1
177,205 - IAI46_00775 0.35 -0.6
177,205 - IAI46_00775 0.35 -1.4
177,223 + IAI46_00775 0.38 -0.0
177,223 + IAI46_00775 0.38 +0.2
177,223 + IAI46_00775 0.38 +0.6
177,223 + IAI46_00775 0.38 +0.2
177,223 + IAI46_00775 0.38 +0.7
177,223 + IAI46_00775 0.38 -0.1
177,224 - IAI46_00775 0.38 +0.6
177,224 - IAI46_00775 0.38 -2.6
177,224 - IAI46_00775 0.38 -0.1
177,224 - IAI46_00775 0.38 +0.2
177,315 + IAI46_00775 0.53 -0.7
177,333 + IAI46_00775 0.56 +0.9
177,375 + IAI46_00775 0.63 +0.7
177,379 + IAI46_00775 0.63 +0.1
177,379 + IAI46_00775 0.63 -1.4
177,380 - IAI46_00775 0.63 +0.3
177,380 - IAI46_00775 0.63 +0.2
177,526 + IAI46_00775 0.87 +0.6
177,566 + +0.5
177,567 - +0.3
177,567 - -0.2
177,768 + IAI46_00780 0.17 -0.3
177,822 + IAI46_00780 0.26 +0.3
177,823 - IAI46_00780 0.26 +0.4
177,823 - IAI46_00780 0.26 -1.3
177,835 + IAI46_00780 0.28 +1.1
177,836 - IAI46_00780 0.28 +0.3
177,842 + IAI46_00780 0.29 +0.1
177,981 + IAI46_00780 0.52 +0.7
177,981 + IAI46_00780 0.52 +0.6
177,982 - IAI46_00780 0.52 +1.4
177,982 - IAI46_00780 0.52 -0.1
178,037 + IAI46_00780 0.61 +0.1
178,037 + IAI46_00780 0.61 +0.3
178,256 + +0.6
178,256 + -0.1
178,257 - -0.1
178,349 + +0.5
178,349 + +1.5
178,350 - -0.5
178,354 + +0.2
178,354 + -0.1
178,360 + -0.3
178,360 + +0.1
178,361 - -0.3
178,429 - -0.1
178,562 + IAI46_00785 0.14 +0.7
178,601 + IAI46_00785 0.18 +0.6
178,602 - IAI46_00785 0.18 +0.4
178,602 - IAI46_00785 0.18 -0.3
178,629 + IAI46_00785 0.20 +0.9
178,630 - IAI46_00785 0.21 +0.1
178,634 - IAI46_00785 0.21 +0.9
178,649 - IAI46_00785 0.22 -0.4
178,685 + IAI46_00785 0.26 -0.6
178,685 + IAI46_00785 0.26 +0.3
178,686 - IAI46_00785 0.26 +0.1
178,728 + IAI46_00785 0.30 -0.1
178,748 + IAI46_00785 0.32 +0.4
178,762 + IAI46_00785 0.33 +0.4
178,930 + IAI46_00785 0.49 +1.3
178,930 + IAI46_00785 0.49 +0.3
178,931 - IAI46_00785 0.50 +0.5
178,931 - IAI46_00785 0.50 +0.6
178,931 - IAI46_00785 0.50 +0.7
178,934 + IAI46_00785 0.50 -0.0
178,939 - IAI46_00785 0.50 +0.0
178,939 - IAI46_00785 0.50 +0.7
179,002 + IAI46_00785 0.56 -0.1
179,002 + IAI46_00785 0.56 +0.4
179,002 + IAI46_00785 0.56 +0.7
179,003 - IAI46_00785 0.56 +0.5
179,005 + IAI46_00785 0.57 +0.1
179,005 + IAI46_00785 0.57 -0.3
179,006 - IAI46_00785 0.57 +1.1
179,006 - IAI46_00785 0.57 +1.1
179,006 - IAI46_00785 0.57 -0.6
179,041 + IAI46_00785 0.60 -0.2
179,098 + IAI46_00785 0.66 -0.1
179,098 + IAI46_00785 0.66 -0.2
179,138 - IAI46_00785 0.69 +0.4
179,138 - IAI46_00785 0.69 +1.7
179,176 - IAI46_00785 0.73 -0.1
179,210 + IAI46_00785 0.76 -0.2

Or see this region's nucleotide sequence