Strain Fitness in Serratia liquefaciens MT49 around IAI46_00700

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00695 and IAI46_00700 are separated by 316 nucleotidesIAI46_00700 and IAI46_00705 are separated by 49 nucleotidesIAI46_00705 and IAI46_00710 are separated by 72 nucleotidesIAI46_00710 and IAI46_00715 are separated by 58 nucleotides IAI46_00695: IAI46_00695 - hydroxymethylbilane synthase, at 159,564 to 160,505 _00695 IAI46_00700: IAI46_00700 - class I adenylate cyclase, at 160,822 to 163,374 _00700 IAI46_00705: IAI46_00705 - iron donor protein CyaY, at 163,424 to 163,744 _00705 IAI46_00710: IAI46_00710 - lipoprotein, at 163,817 to 164,029 _00710 IAI46_00715: IAI46_00715 - diaminopimelate epimerase, at 164,088 to 164,912 _00715 Position (kb) 160 161 162 163 164Strain fitness (log2 ratio) -2 -1 0 1 2at 160.513 kb on - strandat 160.522 kb on - strandat 160.541 kb on - strandat 160.632 kb on + strandat 160.633 kb on - strandat 160.669 kb on + strandat 160.670 kb on - strandat 160.670 kb on - strandat 160.672 kb on + strandat 160.673 kb on - strandat 160.673 kb on - strandat 160.683 kb on + strandat 160.736 kb on + strandat 160.737 kb on - strandat 160.825 kb on + strandat 160.825 kb on + strandat 161.461 kb on + strand, within IAI46_00700at 161.731 kb on - strand, within IAI46_00700at 162.088 kb on + strand, within IAI46_00700at 162.088 kb on + strand, within IAI46_00700at 162.089 kb on - strand, within IAI46_00700at 162.138 kb on + strand, within IAI46_00700at 162.175 kb on - strand, within IAI46_00700at 162.214 kb on + strand, within IAI46_00700at 162.215 kb on - strand, within IAI46_00700at 162.215 kb on - strand, within IAI46_00700at 162.220 kb on + strand, within IAI46_00700at 162.220 kb on + strand, within IAI46_00700at 162.220 kb on + strand, within IAI46_00700at 162.220 kb on + strand, within IAI46_00700at 162.221 kb on - strand, within IAI46_00700at 162.221 kb on - strand, within IAI46_00700at 162.221 kb on - strand, within IAI46_00700at 162.272 kb on - strand, within IAI46_00700at 162.272 kb on - strand, within IAI46_00700at 162.273 kb on + strand, within IAI46_00700at 162.273 kb on + strand, within IAI46_00700at 162.281 kb on - strand, within IAI46_00700at 162.451 kb on + strand, within IAI46_00700at 162.452 kb on - strand, within IAI46_00700at 162.452 kb on - strand, within IAI46_00700at 162.452 kb on - strand, within IAI46_00700at 162.560 kb on + strand, within IAI46_00700at 162.640 kb on - strand, within IAI46_00700at 162.745 kb on + strand, within IAI46_00700at 162.745 kb on + strand, within IAI46_00700at 162.746 kb on - strand, within IAI46_00700at 162.782 kb on + strand, within IAI46_00700at 162.783 kb on - strand, within IAI46_00700at 162.804 kb on + strand, within IAI46_00700at 162.804 kb on + strand, within IAI46_00700at 162.812 kb on + strand, within IAI46_00700at 162.812 kb on + strand, within IAI46_00700at 162.940 kb on + strand, within IAI46_00700at 163.087 kb on - strand, within IAI46_00700at 163.093 kb on + strand, within IAI46_00700at 163.093 kb on + strand, within IAI46_00700at 163.094 kb on - strand, within IAI46_00700at 163.094 kb on - strand, within IAI46_00700at 163.094 kb on - strand, within IAI46_00700at 163.126 kb on + strandat 163.127 kb on - strandat 163.146 kb on + strandat 163.146 kb on + strandat 163.146 kb on + strandat 163.246 kb on + strandat 163.253 kb on + strandat 163.253 kb on + strandat 163.253 kb on + strandat 163.253 kb on + strandat 163.253 kb on + strandat 163.254 kb on - strandat 163.254 kb on - strandat 163.375 kb on + strandat 163.482 kb on + strand, within IAI46_00705at 163.482 kb on + strand, within IAI46_00705at 163.483 kb on - strand, within IAI46_00705at 163.527 kb on + strand, within IAI46_00705at 163.528 kb on - strand, within IAI46_00705at 163.528 kb on - strand, within IAI46_00705at 163.531 kb on + strand, within IAI46_00705at 163.531 kb on + strand, within IAI46_00705at 163.531 kb on + strand, within IAI46_00705at 163.532 kb on - strand, within IAI46_00705at 163.532 kb on - strand, within IAI46_00705at 163.622 kb on + strand, within IAI46_00705at 163.623 kb on - strand, within IAI46_00705at 163.623 kb on - strand, within IAI46_00705at 163.623 kb on - strand, within IAI46_00705at 163.631 kb on + strand, within IAI46_00705at 163.631 kb on + strand, within IAI46_00705at 163.632 kb on - strand, within IAI46_00705at 163.632 kb on - strand, within IAI46_00705at 163.642 kb on + strand, within IAI46_00705at 163.643 kb on - strand, within IAI46_00705at 163.643 kb on - strand, within IAI46_00705at 163.697 kb on - strand, within IAI46_00705at 163.744 kb on + strandat 163.744 kb on + strandat 163.744 kb on + strandat 163.756 kb on - strandat 163.784 kb on + strandat 163.784 kb on + strandat 163.784 kb on + strandat 163.784 kb on + strandat 163.785 kb on - strandat 163.807 kb on - strandat 163.815 kb on + strandat 163.836 kb on + strandat 163.836 kb on + strandat 163.836 kb on + strandat 163.836 kb on + strandat 163.836 kb on + strandat 163.836 kb on + strandat 163.837 kb on - strandat 163.837 kb on - strandat 163.841 kb on + strand, within IAI46_00710at 163.842 kb on - strand, within IAI46_00710at 163.842 kb on - strand, within IAI46_00710at 163.931 kb on - strand, within IAI46_00710at 164.027 kb on + strandat 164.027 kb on + strandat 164.082 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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160,513 - +0.9
160,522 - -0.1
160,541 - +0.1
160,632 + +0.1
160,633 - +1.2
160,669 + -0.5
160,670 - -0.1
160,670 - +0.1
160,672 + +0.4
160,673 - -0.4
160,673 - -0.3
160,683 + +0.6
160,736 + +0.1
160,737 - -0.3
160,825 + +1.4
160,825 + -0.6
161,461 + IAI46_00700 0.25 +0.5
161,731 - IAI46_00700 0.36 -0.0
162,088 + IAI46_00700 0.50 +0.5
162,088 + IAI46_00700 0.50 +1.2
162,089 - IAI46_00700 0.50 -0.3
162,138 + IAI46_00700 0.52 +1.0
162,175 - IAI46_00700 0.53 +1.4
162,214 + IAI46_00700 0.55 -1.5
162,215 - IAI46_00700 0.55 -1.5
162,215 - IAI46_00700 0.55 -0.5
162,220 + IAI46_00700 0.55 +1.2
162,220 + IAI46_00700 0.55 -0.0
162,220 + IAI46_00700 0.55 +0.0
162,220 + IAI46_00700 0.55 +0.5
162,221 - IAI46_00700 0.55 +0.6
162,221 - IAI46_00700 0.55 +0.1
162,221 - IAI46_00700 0.55 +1.1
162,272 - IAI46_00700 0.57 +0.1
162,272 - IAI46_00700 0.57 +0.8
162,273 + IAI46_00700 0.57 +1.4
162,273 + IAI46_00700 0.57 +2.2
162,281 - IAI46_00700 0.57 +1.3
162,451 + IAI46_00700 0.64 +0.8
162,452 - IAI46_00700 0.64 +0.3
162,452 - IAI46_00700 0.64 +0.4
162,452 - IAI46_00700 0.64 +0.3
162,560 + IAI46_00700 0.68 +0.4
162,640 - IAI46_00700 0.71 +1.1
162,745 + IAI46_00700 0.75 +0.3
162,745 + IAI46_00700 0.75 -0.4
162,746 - IAI46_00700 0.75 +0.9
162,782 + IAI46_00700 0.77 +0.0
162,783 - IAI46_00700 0.77 +0.3
162,804 + IAI46_00700 0.78 -0.0
162,804 + IAI46_00700 0.78 +0.7
162,812 + IAI46_00700 0.78 +0.8
162,812 + IAI46_00700 0.78 +0.9
162,940 + IAI46_00700 0.83 +0.2
163,087 - IAI46_00700 0.89 +0.7
163,093 + IAI46_00700 0.89 -0.6
163,093 + IAI46_00700 0.89 +0.4
163,094 - IAI46_00700 0.89 -0.4
163,094 - IAI46_00700 0.89 +1.5
163,094 - IAI46_00700 0.89 -0.3
163,126 + -0.2
163,127 - +0.6
163,146 + +1.0
163,146 + +1.2
163,146 + -0.8
163,246 + +2.4
163,253 + -0.2
163,253 + +0.5
163,253 + +1.1
163,253 + +0.6
163,253 + -1.3
163,254 - +1.5
163,254 - +0.5
163,375 + +0.6
163,482 + IAI46_00705 0.18 -0.4
163,482 + IAI46_00705 0.18 +0.5
163,483 - IAI46_00705 0.18 +0.4
163,527 + IAI46_00705 0.32 -1.2
163,528 - IAI46_00705 0.32 +0.2
163,528 - IAI46_00705 0.32 -0.5
163,531 + IAI46_00705 0.33 -0.2
163,531 + IAI46_00705 0.33 +0.6
163,531 + IAI46_00705 0.33 +0.0
163,532 - IAI46_00705 0.34 +0.4
163,532 - IAI46_00705 0.34 -1.1
163,622 + IAI46_00705 0.62 -0.8
163,623 - IAI46_00705 0.62 -0.4
163,623 - IAI46_00705 0.62 -1.0
163,623 - IAI46_00705 0.62 -0.1
163,631 + IAI46_00705 0.64 -2.5
163,631 + IAI46_00705 0.64 +0.3
163,632 - IAI46_00705 0.65 -0.5
163,632 - IAI46_00705 0.65 +0.2
163,642 + IAI46_00705 0.68 +0.3
163,643 - IAI46_00705 0.68 -0.9
163,643 - IAI46_00705 0.68 +0.8
163,697 - IAI46_00705 0.85 -0.1
163,744 + -1.2
163,744 + -0.8
163,744 + -0.0
163,756 - +1.0
163,784 + -0.1
163,784 + +0.1
163,784 + -0.0
163,784 + +1.0
163,785 - -0.8
163,807 - -1.8
163,815 + +0.2
163,836 + +0.1
163,836 + +2.3
163,836 + -0.4
163,836 + +0.5
163,836 + +1.0
163,836 + +0.0
163,837 - -0.0
163,837 - +0.3
163,841 + IAI46_00710 0.11 +0.2
163,842 - IAI46_00710 0.12 +1.0
163,842 - IAI46_00710 0.12 +0.3
163,931 - IAI46_00710 0.54 +0.3
164,027 + -0.6
164,027 + +0.3
164,082 + -0.9

Or see this region's nucleotide sequence