Strain Fitness in Serratia liquefaciens MT49 around IAI46_00235

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00225 and IAI46_00230 are separated by 228 nucleotidesIAI46_00230 and IAI46_00235 are separated by 33 nucleotidesIAI46_00235 and IAI46_00240 are separated by 66 nucleotides IAI46_00225: IAI46_00225 - formate dehydrogenase accessory protein FdhE, at 51,695 to 52,624 _00225 IAI46_00230: IAI46_00230 - DcrB-related protein, at 52,853 to 53,500 _00230 IAI46_00235: IAI46_00235 - glutathione S-transferase, at 53,534 to 54,139 _00235 IAI46_00240: IAI46_00240 - L-seryl-tRNA(Sec) selenium transferase, at 54,206 to 55,597 _00240 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1at 52.651 kb on + strandat 52.652 kb on - strandat 52.682 kb on - strandat 52.682 kb on - strandat 52.682 kb on - strandat 52.682 kb on - strandat 52.682 kb on - strandat 52.691 kb on - strandat 52.691 kb on - strandat 52.747 kb on + strandat 52.748 kb on - strandat 52.755 kb on + strandat 52.755 kb on + strandat 52.760 kb on - strandat 52.760 kb on - strandat 52.807 kb on + strandat 52.807 kb on + strandat 52.808 kb on - strandat 52.808 kb on - strandat 52.808 kb on - strandat 52.808 kb on - strandat 52.813 kb on + strandat 52.930 kb on + strand, within IAI46_00230at 53.221 kb on + strand, within IAI46_00230at 53.222 kb on - strand, within IAI46_00230at 53.273 kb on + strand, within IAI46_00230at 53.281 kb on + strand, within IAI46_00230at 53.370 kb on + strand, within IAI46_00230at 53.370 kb on + strand, within IAI46_00230at 53.370 kb on + strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.377 kb on + strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.498 kb on + strandat 53.498 kb on + strandat 53.542 kb on + strandat 53.543 kb on - strandat 53.543 kb on - strandat 53.553 kb on - strandat 53.714 kb on + strand, within IAI46_00235at 53.714 kb on + strand, within IAI46_00235at 53.739 kb on - strand, within IAI46_00235at 53.803 kb on - strand, within IAI46_00235at 54.026 kb on + strand, within IAI46_00235at 54.168 kb on + strandat 54.169 kb on - strandat 54.187 kb on - strandat 54.187 kb on - strandat 54.187 kb on - strandat 54.230 kb on + strandat 54.241 kb on - strandat 54.321 kb on + strandat 54.321 kb on + strandat 54.322 kb on - strandat 54.322 kb on - strandat 54.358 kb on + strand, within IAI46_00240at 54.359 kb on - strand, within IAI46_00240at 54.359 kb on - strand, within IAI46_00240at 54.517 kb on - strand, within IAI46_00240at 54.517 kb on - strand, within IAI46_00240at 54.519 kb on + strand, within IAI46_00240at 54.519 kb on + strand, within IAI46_00240at 54.519 kb on + strand, within IAI46_00240at 54.520 kb on - strand, within IAI46_00240at 54.563 kb on + strand, within IAI46_00240at 54.564 kb on - strand, within IAI46_00240at 54.615 kb on + strand, within IAI46_00240at 54.615 kb on + strand, within IAI46_00240at 54.616 kb on - strand, within IAI46_00240at 54.616 kb on - strand, within IAI46_00240at 54.616 kb on - strand, within IAI46_00240at 54.616 kb on - strand, within IAI46_00240at 54.616 kb on - strand, within IAI46_00240at 54.618 kb on + strand, within IAI46_00240at 54.883 kb on + strand, within IAI46_00240at 54.883 kb on + strand, within IAI46_00240at 54.883 kb on + strand, within IAI46_00240at 54.883 kb on + strand, within IAI46_00240at 54.884 kb on - strand, within IAI46_00240at 54.884 kb on - strand, within IAI46_00240at 54.894 kb on - strand, within IAI46_00240at 55.013 kb on + strand, within IAI46_00240at 55.014 kb on - strand, within IAI46_00240at 55.014 kb on - strand, within IAI46_00240at 55.064 kb on + strand, within IAI46_00240

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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52,651 + +0.0
52,652 - -0.1
52,682 - -1.0
52,682 - +0.4
52,682 - +0.2
52,682 - -0.0
52,682 - +0.5
52,691 - +0.1
52,691 - -0.4
52,747 + +0.2
52,748 - -0.3
52,755 + +0.3
52,755 + -0.2
52,760 - +0.2
52,760 - -0.6
52,807 + -0.9
52,807 + +0.7
52,808 - +0.0
52,808 - +0.1
52,808 - +0.3
52,808 - -0.3
52,813 + -0.2
52,930 + IAI46_00230 0.12 +0.7
53,221 + IAI46_00230 0.57 -0.5
53,222 - IAI46_00230 0.57 -0.0
53,273 + IAI46_00230 0.65 -0.2
53,281 + IAI46_00230 0.66 -0.8
53,370 + IAI46_00230 0.80 -0.8
53,370 + IAI46_00230 0.80 -1.0
53,370 + IAI46_00230 0.80 -0.5
53,371 - IAI46_00230 0.80 +0.7
53,371 - IAI46_00230 0.80 +0.8
53,371 - IAI46_00230 0.80 +0.1
53,371 - IAI46_00230 0.80 +0.1
53,371 - IAI46_00230 0.80 -0.7
53,371 - IAI46_00230 0.80 -1.1
53,377 + IAI46_00230 0.81 +0.6
53,378 - IAI46_00230 0.81 +1.1
53,378 - IAI46_00230 0.81 +1.0
53,378 - IAI46_00230 0.81 -0.2
53,378 - IAI46_00230 0.81 +0.5
53,378 - IAI46_00230 0.81 -0.4
53,378 - IAI46_00230 0.81 -1.5
53,498 + -1.6
53,498 + +0.2
53,542 + -0.2
53,543 - -0.8
53,543 - -0.2
53,553 - +0.5
53,714 + IAI46_00235 0.30 -0.6
53,714 + IAI46_00235 0.30 +0.7
53,739 - IAI46_00235 0.34 -1.4
53,803 - IAI46_00235 0.44 +0.3
54,026 + IAI46_00235 0.81 +0.0
54,168 + -0.1
54,169 - -0.3
54,187 - -0.4
54,187 - +0.4
54,187 - -0.1
54,230 + +0.2
54,241 - +0.9
54,321 + +0.1
54,321 + -0.3
54,322 - -0.2
54,322 - +1.3
54,358 + IAI46_00240 0.11 -1.5
54,359 - IAI46_00240 0.11 -0.6
54,359 - IAI46_00240 0.11 +0.1
54,517 - IAI46_00240 0.22 -1.1
54,517 - IAI46_00240 0.22 +0.5
54,519 + IAI46_00240 0.22 -1.3
54,519 + IAI46_00240 0.22 +0.7
54,519 + IAI46_00240 0.22 +0.2
54,520 - IAI46_00240 0.23 +0.6
54,563 + IAI46_00240 0.26 +0.7
54,564 - IAI46_00240 0.26 +0.5
54,615 + IAI46_00240 0.29 -1.6
54,615 + IAI46_00240 0.29 -0.2
54,616 - IAI46_00240 0.29 -0.3
54,616 - IAI46_00240 0.29 -0.4
54,616 - IAI46_00240 0.29 +0.7
54,616 - IAI46_00240 0.29 +0.2
54,616 - IAI46_00240 0.29 -1.3
54,618 + IAI46_00240 0.30 +0.9
54,883 + IAI46_00240 0.49 -0.2
54,883 + IAI46_00240 0.49 +0.0
54,883 + IAI46_00240 0.49 -0.1
54,883 + IAI46_00240 0.49 +0.3
54,884 - IAI46_00240 0.49 +1.1
54,884 - IAI46_00240 0.49 -0.1
54,894 - IAI46_00240 0.49 -0.9
55,013 + IAI46_00240 0.58 +0.0
55,014 - IAI46_00240 0.58 -1.8
55,014 - IAI46_00240 0.58 +1.3
55,064 + IAI46_00240 0.62 -0.1

Or see this region's nucleotide sequence