Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00070 and IAI46_00075 are separated by 186 nucleotides IAI46_00075 and IAI46_00080 overlap by 11 nucleotides IAI46_00080 and IAI46_00085 are separated by 47 nucleotides IAI46_00085 and IAI46_00090 are separated by 166 nucleotides
IAI46_00070: IAI46_00070 - alpha-amylase, at 15,472 to 17,541
_00070
IAI46_00075: IAI46_00075 - ribbon-helix-helix protein, CopG family, at 17,728 to 17,976
_00075
IAI46_00080: IAI46_00080 - type II toxin-antitoxin system RelE/ParE family toxin, at 17,966 to 18,253
_00080
IAI46_00085: IAI46_00085 - glyoxylate/hydroxypyruvate reductase GhrB, at 18,301 to 19,275
_00085
IAI46_00090: IAI46_00090 - MFS transporter, at 19,442 to 20,710
_00090
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.384 kb on + strand at 17.551 kb on + strand at 17.552 kb on - strand at 17.578 kb on + strand at 17.613 kb on + strand at 17.691 kb on + strand at 17.696 kb on + strand at 17.696 kb on + strand at 17.696 kb on + strand at 17.697 kb on - strand at 17.697 kb on - strand at 17.703 kb on + strand at 17.703 kb on + strand at 17.704 kb on - strand at 17.704 kb on - strand at 17.704 kb on - strand at 17.705 kb on + strand at 17.705 kb on + strand at 17.728 kb on - strand at 17.728 kb on - strand at 17.728 kb on - strand at 17.728 kb on - strand at 17.982 kb on + strand at 17.983 kb on - strand at 18.014 kb on + strand, within IAI46_00080 at 18.015 kb on - strand, within IAI46_00080 at 18.015 kb on - strand, within IAI46_00080 at 18.078 kb on + strand, within IAI46_00080 at 18.165 kb on - strand, within IAI46_00080 at 18.177 kb on - strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.199 kb on - strand, within IAI46_00080 at 18.199 kb on - strand, within IAI46_00080 at 18.199 kb on - strand, within IAI46_00080 at 18.203 kb on - strand, within IAI46_00080 at 18.220 kb on + strand, within IAI46_00080 at 18.281 kb on - strand at 18.281 kb on - strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.302 kb on + strand at 18.302 kb on + strand at 18.302 kb on + strand at 18.434 kb on - strand, within IAI46_00085 at 18.436 kb on + strand, within IAI46_00085 at 18.437 kb on - strand, within IAI46_00085 at 18.467 kb on - strand, within IAI46_00085 at 18.513 kb on + strand, within IAI46_00085 at 18.513 kb on + strand, within IAI46_00085 at 18.513 kb on + strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.657 kb on + strand, within IAI46_00085 at 18.658 kb on - strand, within IAI46_00085 at 18.658 kb on - strand, within IAI46_00085 at 18.658 kb on - strand, within IAI46_00085 at 18.715 kb on - strand, within IAI46_00085 at 18.753 kb on + strand, within IAI46_00085 at 18.754 kb on - strand, within IAI46_00085 at 18.755 kb on + strand, within IAI46_00085 at 18.755 kb on + strand, within IAI46_00085 at 18.755 kb on + strand, within IAI46_00085 at 18.755 kb on + strand, within IAI46_00085 at 18.755 kb on + strand, within IAI46_00085 at 18.755 kb on + strand, within IAI46_00085 at 18.756 kb on - strand, within IAI46_00085 at 18.756 kb on - strand, within IAI46_00085 at 18.756 kb on - strand, within IAI46_00085 at 18.810 kb on + strand, within IAI46_00085 at 18.811 kb on - strand, within IAI46_00085 at 18.835 kb on - strand, within IAI46_00085 at 18.919 kb on + strand, within IAI46_00085 at 18.919 kb on + strand, within IAI46_00085 at 18.920 kb on - strand, within IAI46_00085 at 18.920 kb on - strand, within IAI46_00085 at 18.920 kb on - strand, within IAI46_00085 at 18.920 kb on - strand, within IAI46_00085 at 18.920 kb on - strand, within IAI46_00085 at 19.011 kb on + strand, within IAI46_00085 at 19.021 kb on - strand, within IAI46_00085 at 19.159 kb on + strand, within IAI46_00085 at 19.159 kb on + strand, within IAI46_00085 at 19.159 kb on + strand, within IAI46_00085 at 19.253 kb on + strand at 19.263 kb on + strand at 19.263 kb on + strand at 19.263 kb on + strand at 19.263 kb on + strand at 19.263 kb on + strand at 19.263 kb on + strand at 19.264 kb on - strand at 19.264 kb on - strand at 19.280 kb on + strand at 19.281 kb on - strand at 19.281 kb on - strand at 19.281 kb on - strand at 19.281 kb on - strand at 19.291 kb on + strand at 19.291 kb on + strand at 19.292 kb on - strand at 19.292 kb on - strand at 19.292 kb on - strand at 19.349 kb on - strand at 19.352 kb on + strand at 19.352 kb on + strand at 19.352 kb on + strand at 19.353 kb on - strand at 19.412 kb on - strand at 19.413 kb on + strand at 19.413 kb on + strand at 19.413 kb on + strand at 19.413 kb on + strand at 19.413 kb on + strand at 19.413 kb on + strand at 19.413 kb on + strand at 19.414 kb on - strand at 19.432 kb on + strand at 19.443 kb on + strand at 19.444 kb on - strand at 19.526 kb on - strand at 19.531 kb on + strand at 19.531 kb on + strand at 19.532 kb on - strand at 19.532 kb on - strand at 19.532 kb on - strand at 19.532 kb on - strand at 19.533 kb on + strand at 19.533 kb on + strand at 19.533 kb on + strand at 19.533 kb on + strand at 19.534 kb on - strand at 19.534 kb on - strand at 19.698 kb on + strand, within IAI46_00090 at 19.698 kb on + strand, within IAI46_00090 at 19.698 kb on + strand, within IAI46_00090 at 19.699 kb on - strand, within IAI46_00090 at 19.731 kb on + strand, within IAI46_00090 at 19.731 kb on + strand, within IAI46_00090 at 19.731 kb on + strand, within IAI46_00090 at 19.731 kb on + strand, within IAI46_00090 at 19.732 kb on - strand, within IAI46_00090 at 19.732 kb on - strand, within IAI46_00090 at 19.732 kb on - strand, within IAI46_00090 at 19.764 kb on + strand, within IAI46_00090 at 19.764 kb on + strand, within IAI46_00090 at 19.764 kb on + strand, within IAI46_00090 at 19.764 kb on + strand, within IAI46_00090 at 19.764 kb on + strand, within IAI46_00090 at 19.765 kb on - strand, within IAI46_00090 at 19.765 kb on - strand, within IAI46_00090 at 19.765 kb on - strand, within IAI46_00090 at 19.820 kb on - strand, within IAI46_00090 at 19.881 kb on + strand, within IAI46_00090 at 19.881 kb on + strand, within IAI46_00090 at 19.881 kb on + strand, within IAI46_00090 at 19.881 kb on + strand, within IAI46_00090 at 19.881 kb on + strand, within IAI46_00090 at 19.882 kb on - strand, within IAI46_00090 at 19.886 kb on + strand, within IAI46_00090 at 19.942 kb on + strand, within IAI46_00090 at 19.943 kb on - strand, within IAI46_00090 at 19.943 kb on - strand, within IAI46_00090 at 19.943 kb on - strand, within IAI46_00090 at 19.943 kb on - strand, within IAI46_00090 at 20.041 kb on - strand, within IAI46_00090 at 20.041 kb on - strand, within IAI46_00090 at 20.044 kb on + strand, within IAI46_00090 at 20.044 kb on + strand, within IAI46_00090 at 20.045 kb on - strand, within IAI46_00090 at 20.045 kb on - strand, within IAI46_00090 at 20.217 kb on + strand, within IAI46_00090 at 20.217 kb on + strand, within IAI46_00090
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 17,384 + +0.1 17,551 + +1.1 17,552 - -1.0 17,578 + -0.3 17,613 + +0.5 17,691 + -0.7 17,696 + +0.5 17,696 + -0.4 17,696 + -0.2 17,697 - -0.1 17,697 - -0.2 17,703 + -0.7 17,703 + -0.6 17,704 - -0.0 17,704 - +0.3 17,704 - +0.1 17,705 + +0.2 17,705 + -0.4 17,728 - +0.2 17,728 - -0.2 17,728 - +0.4 17,728 - -0.7 17,982 + -0.1 17,983 - +0.7 18,014 + IAI46_00080 0.17 +1.6 18,015 - IAI46_00080 0.17 +0.5 18,015 - IAI46_00080 0.17 -0.2 18,078 + IAI46_00080 0.39 +0.3 18,165 - IAI46_00080 0.69 -0.1 18,177 - IAI46_00080 0.73 -1.3 18,198 + IAI46_00080 0.81 +0.2 18,198 + IAI46_00080 0.81 -0.6 18,198 + IAI46_00080 0.81 -0.6 18,198 + IAI46_00080 0.81 -0.3 18,198 + IAI46_00080 0.81 -1.2 18,198 + IAI46_00080 0.81 +0.2 18,199 - IAI46_00080 0.81 +0.7 18,199 - IAI46_00080 0.81 -0.3 18,199 - IAI46_00080 0.81 +0.8 18,203 - IAI46_00080 0.82 -0.2 18,220 + IAI46_00080 0.88 -0.0 18,281 - +0.3 18,281 - -0.5 18,299 + -0.8 18,299 + +0.4 18,299 + -0.0 18,302 + +0.2 18,302 + -0.6 18,302 + +0.7 18,434 - IAI46_00085 0.14 -0.2 18,436 + IAI46_00085 0.14 +0.9 18,437 - IAI46_00085 0.14 +0.3 18,467 - IAI46_00085 0.17 -0.0 18,513 + IAI46_00085 0.22 +0.2 18,513 + IAI46_00085 0.22 -0.4 18,513 + IAI46_00085 0.22 +0.4 18,514 - IAI46_00085 0.22 +0.7 18,514 - IAI46_00085 0.22 +0.8 18,514 - IAI46_00085 0.22 -0.7 18,514 - IAI46_00085 0.22 +0.5 18,514 - IAI46_00085 0.22 +0.3 18,657 + IAI46_00085 0.37 +0.0 18,658 - IAI46_00085 0.37 +0.6 18,658 - IAI46_00085 0.37 +0.8 18,658 - IAI46_00085 0.37 -0.5 18,715 - IAI46_00085 0.42 -0.4 18,753 + IAI46_00085 0.46 -0.4 18,754 - IAI46_00085 0.46 -0.2 18,755 + IAI46_00085 0.47 -0.7 18,755 + IAI46_00085 0.47 +0.1 18,755 + IAI46_00085 0.47 +0.1 18,755 + IAI46_00085 0.47 +0.1 18,755 + IAI46_00085 0.47 -0.4 18,755 + IAI46_00085 0.47 +0.6 18,756 - IAI46_00085 0.47 +0.2 18,756 - IAI46_00085 0.47 +0.0 18,756 - IAI46_00085 0.47 -0.2 18,810 + IAI46_00085 0.52 +0.5 18,811 - IAI46_00085 0.52 -2.0 18,835 - IAI46_00085 0.55 +0.3 18,919 + IAI46_00085 0.63 +2.0 18,919 + IAI46_00085 0.63 -0.8 18,920 - IAI46_00085 0.63 -0.1 18,920 - IAI46_00085 0.63 -0.1 18,920 - IAI46_00085 0.63 +0.1 18,920 - IAI46_00085 0.63 -1.0 18,920 - IAI46_00085 0.63 +0.3 19,011 + IAI46_00085 0.73 -0.1 19,021 - IAI46_00085 0.74 -0.0 19,159 + IAI46_00085 0.88 -1.6 19,159 + IAI46_00085 0.88 +0.3 19,159 + IAI46_00085 0.88 +1.5 19,253 + -0.5 19,263 + +1.3 19,263 + -0.2 19,263 + +0.2 19,263 + +1.5 19,263 + +0.6 19,263 + +0.5 19,264 - +0.7 19,264 - +1.1 19,280 + -0.6 19,281 - -0.1 19,281 - -0.0 19,281 - -0.1 19,281 - -0.0 19,291 + -1.5 19,291 + -0.6 19,292 - -0.2 19,292 - +0.5 19,292 - -0.0 19,349 - +1.2 19,352 + -0.4 19,352 + +0.3 19,352 + -0.1 19,353 - -1.0 19,412 - +0.6 19,413 + -0.1 19,413 + +0.3 19,413 + -0.8 19,413 + +1.1 19,413 + +0.6 19,413 + +0.2 19,413 + +0.9 19,414 - -0.4 19,432 + +0.7 19,443 + +0.6 19,444 - -0.1 19,526 - +0.3 19,531 + +0.1 19,531 + -0.0 19,532 - -1.1 19,532 - -0.3 19,532 - +0.4 19,532 - +0.0 19,533 + -0.6 19,533 + +0.2 19,533 + -0.2 19,533 + -0.4 19,534 - +1.1 19,534 - +1.0 19,698 + IAI46_00090 0.20 -1.6 19,698 + IAI46_00090 0.20 +0.2 19,698 + IAI46_00090 0.20 +0.9 19,699 - IAI46_00090 0.20 +0.5 19,731 + IAI46_00090 0.23 +0.2 19,731 + IAI46_00090 0.23 +0.3 19,731 + IAI46_00090 0.23 +0.2 19,731 + IAI46_00090 0.23 -0.9 19,732 - IAI46_00090 0.23 +0.4 19,732 - IAI46_00090 0.23 +0.4 19,732 - IAI46_00090 0.23 +0.1 19,764 + IAI46_00090 0.25 -1.0 19,764 + IAI46_00090 0.25 -0.8 19,764 + IAI46_00090 0.25 +0.2 19,764 + IAI46_00090 0.25 +0.2 19,764 + IAI46_00090 0.25 +0.6 19,765 - IAI46_00090 0.25 +0.3 19,765 - IAI46_00090 0.25 +0.5 19,765 - IAI46_00090 0.25 -0.3 19,820 - IAI46_00090 0.30 -0.2 19,881 + IAI46_00090 0.35 -0.3 19,881 + IAI46_00090 0.35 +1.4 19,881 + IAI46_00090 0.35 -0.5 19,881 + IAI46_00090 0.35 +0.0 19,881 + IAI46_00090 0.35 +0.0 19,882 - IAI46_00090 0.35 +0.0 19,886 + IAI46_00090 0.35 -3.0 19,942 + IAI46_00090 0.39 +0.2 19,943 - IAI46_00090 0.39 -0.1 19,943 - IAI46_00090 0.39 +0.9 19,943 - IAI46_00090 0.39 +1.1 19,943 - IAI46_00090 0.39 -0.7 20,041 - IAI46_00090 0.47 +0.0 20,041 - IAI46_00090 0.47 +0.2 20,044 + IAI46_00090 0.47 +0.2 20,044 + IAI46_00090 0.47 -1.6 20,045 - IAI46_00090 0.48 -0.1 20,045 - IAI46_00090 0.48 +0.1 20,217 + IAI46_00090 0.61 +0.3 20,217 + IAI46_00090 0.61 +0.0
Or see this region's nucleotide sequence