Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4306

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4304 and EX28DRAFT_4305 are separated by 12 nucleotidesEX28DRAFT_4305 and EX28DRAFT_4306 are separated by 108 nucleotidesEX28DRAFT_4306 and EX28DRAFT_4307 are separated by 114 nucleotides EX28DRAFT_4304: EX28DRAFT_4304 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 107,640 to 108,509 _4304 EX28DRAFT_4305: EX28DRAFT_4305 - chorismate lyase (EC 4.1.3.40), at 108,522 to 109,091 _4305 EX28DRAFT_4306: EX28DRAFT_4306 - Maltose operon periplasmic protein precursor (MalM), at 109,200 to 110,153 _4306 EX28DRAFT_4307: EX28DRAFT_4307 - Maltoporin (phage lambda and maltose receptor), at 110,268 to 111,581 _4307 Position (kb) 109 110 111Strain fitness (log2 ratio) -2 -1 0 1 2at 108.527 kb on - strandat 109.035 kb on - strandat 109.035 kb on - strandat 109.038 kb on + strandat 109.038 kb on + strandat 109.038 kb on + strandat 109.039 kb on - strandat 109.039 kb on - strandat 109.039 kb on - strandat 109.043 kb on + strandat 109.043 kb on + strandat 109.044 kb on - strandat 109.044 kb on - strandat 109.054 kb on + strandat 109.054 kb on + strandat 109.055 kb on - strandat 109.090 kb on - strandat 109.215 kb on + strandat 109.337 kb on - strand, within EX28DRAFT_4306at 109.337 kb on - strand, within EX28DRAFT_4306at 109.432 kb on + strand, within EX28DRAFT_4306at 109.451 kb on + strand, within EX28DRAFT_4306at 109.456 kb on - strand, within EX28DRAFT_4306at 109.520 kb on + strand, within EX28DRAFT_4306at 109.520 kb on + strand, within EX28DRAFT_4306at 109.632 kb on - strand, within EX28DRAFT_4306at 109.637 kb on + strand, within EX28DRAFT_4306at 109.637 kb on + strand, within EX28DRAFT_4306at 109.651 kb on - strand, within EX28DRAFT_4306at 109.681 kb on + strand, within EX28DRAFT_4306at 109.681 kb on + strand, within EX28DRAFT_4306at 109.682 kb on - strand, within EX28DRAFT_4306at 109.682 kb on - strand, within EX28DRAFT_4306at 109.682 kb on - strand, within EX28DRAFT_4306at 109.766 kb on + strand, within EX28DRAFT_4306at 109.766 kb on + strand, within EX28DRAFT_4306at 109.766 kb on + strand, within EX28DRAFT_4306at 109.766 kb on + strand, within EX28DRAFT_4306at 109.766 kb on + strand, within EX28DRAFT_4306at 109.767 kb on - strand, within EX28DRAFT_4306at 109.767 kb on - strand, within EX28DRAFT_4306at 109.767 kb on - strand, within EX28DRAFT_4306at 110.157 kb on + strandat 110.157 kb on + strandat 110.158 kb on - strandat 110.158 kb on - strandat 110.158 kb on - strandat 110.161 kb on - strandat 110.197 kb on + strandat 110.243 kb on - strandat 110.250 kb on + strandat 110.251 kb on - strandat 110.251 kb on - strandat 110.269 kb on + strandat 110.269 kb on + strandat 110.369 kb on - strandat 110.493 kb on - strand, within EX28DRAFT_4307at 110.587 kb on + strand, within EX28DRAFT_4307at 110.587 kb on + strand, within EX28DRAFT_4307at 110.587 kb on + strand, within EX28DRAFT_4307at 110.587 kb on + strand, within EX28DRAFT_4307at 110.587 kb on + strand, within EX28DRAFT_4307at 110.587 kb on + strand, within EX28DRAFT_4307at 110.588 kb on - strand, within EX28DRAFT_4307at 110.591 kb on + strand, within EX28DRAFT_4307at 110.653 kb on + strand, within EX28DRAFT_4307at 110.654 kb on - strand, within EX28DRAFT_4307at 110.654 kb on - strand, within EX28DRAFT_4307at 110.657 kb on + strand, within EX28DRAFT_4307at 110.657 kb on + strand, within EX28DRAFT_4307at 110.665 kb on + strand, within EX28DRAFT_4307at 110.665 kb on + strand, within EX28DRAFT_4307at 110.665 kb on + strand, within EX28DRAFT_4307at 110.666 kb on - strand, within EX28DRAFT_4307at 110.666 kb on - strand, within EX28DRAFT_4307at 110.780 kb on + strand, within EX28DRAFT_4307at 110.780 kb on + strand, within EX28DRAFT_4307at 110.780 kb on + strand, within EX28DRAFT_4307at 110.781 kb on - strand, within EX28DRAFT_4307at 110.888 kb on - strand, within EX28DRAFT_4307at 110.888 kb on - strand, within EX28DRAFT_4307at 110.890 kb on + strand, within EX28DRAFT_4307at 110.891 kb on - strand, within EX28DRAFT_4307at 110.891 kb on - strand, within EX28DRAFT_4307at 110.891 kb on - strand, within EX28DRAFT_4307at 111.011 kb on + strand, within EX28DRAFT_4307at 111.011 kb on + strand, within EX28DRAFT_4307at 111.012 kb on - strand, within EX28DRAFT_4307at 111.012 kb on - strand, within EX28DRAFT_4307at 111.012 kb on - strand, within EX28DRAFT_4307at 111.149 kb on - strand, within EX28DRAFT_4307at 111.152 kb on - strand, within EX28DRAFT_4307

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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108,527 - -0.8
109,035 - -0.2
109,035 - -1.0
109,038 + -0.1
109,038 + +1.2
109,038 + +0.4
109,039 - -0.4
109,039 - +0.5
109,039 - +1.5
109,043 + +0.3
109,043 + +0.5
109,044 - +0.8
109,044 - -0.5
109,054 + -0.5
109,054 + +0.9
109,055 - -0.3
109,090 - -0.3
109,215 + +0.3
109,337 - EX28DRAFT_4306 0.14 -0.4
109,337 - EX28DRAFT_4306 0.14 -0.2
109,432 + EX28DRAFT_4306 0.24 +1.5
109,451 + EX28DRAFT_4306 0.26 +0.5
109,456 - EX28DRAFT_4306 0.27 -1.2
109,520 + EX28DRAFT_4306 0.34 +0.8
109,520 + EX28DRAFT_4306 0.34 -1.1
109,632 - EX28DRAFT_4306 0.45 -0.6
109,637 + EX28DRAFT_4306 0.46 -0.8
109,637 + EX28DRAFT_4306 0.46 -0.2
109,651 - EX28DRAFT_4306 0.47 -1.3
109,681 + EX28DRAFT_4306 0.50 +0.5
109,681 + EX28DRAFT_4306 0.50 -0.6
109,682 - EX28DRAFT_4306 0.51 -0.7
109,682 - EX28DRAFT_4306 0.51 +0.2
109,682 - EX28DRAFT_4306 0.51 +0.1
109,766 + EX28DRAFT_4306 0.59 -1.6
109,766 + EX28DRAFT_4306 0.59 +0.6
109,766 + EX28DRAFT_4306 0.59 -0.4
109,766 + EX28DRAFT_4306 0.59 -0.5
109,766 + EX28DRAFT_4306 0.59 -0.7
109,767 - EX28DRAFT_4306 0.59 -1.9
109,767 - EX28DRAFT_4306 0.59 -0.5
109,767 - EX28DRAFT_4306 0.59 -0.5
110,157 + +2.2
110,157 + +0.4
110,158 - -0.5
110,158 - -0.1
110,158 - -1.4
110,161 - +0.4
110,197 + -0.4
110,243 - -1.7
110,250 + +0.1
110,251 - -1.9
110,251 - +1.0
110,269 + -0.1
110,269 + -0.1
110,369 - -0.1
110,493 - EX28DRAFT_4307 0.17 -0.6
110,587 + EX28DRAFT_4307 0.24 +1.1
110,587 + EX28DRAFT_4307 0.24 -0.2
110,587 + EX28DRAFT_4307 0.24 -0.8
110,587 + EX28DRAFT_4307 0.24 -0.1
110,587 + EX28DRAFT_4307 0.24 -0.6
110,587 + EX28DRAFT_4307 0.24 -0.2
110,588 - EX28DRAFT_4307 0.24 +0.1
110,591 + EX28DRAFT_4307 0.25 +0.4
110,653 + EX28DRAFT_4307 0.29 +0.1
110,654 - EX28DRAFT_4307 0.29 +1.2
110,654 - EX28DRAFT_4307 0.29 +0.5
110,657 + EX28DRAFT_4307 0.30 -1.7
110,657 + EX28DRAFT_4307 0.30 +1.2
110,665 + EX28DRAFT_4307 0.30 +1.2
110,665 + EX28DRAFT_4307 0.30 +0.4
110,665 + EX28DRAFT_4307 0.30 +0.5
110,666 - EX28DRAFT_4307 0.30 -1.4
110,666 - EX28DRAFT_4307 0.30 +0.2
110,780 + EX28DRAFT_4307 0.39 -0.0
110,780 + EX28DRAFT_4307 0.39 +0.4
110,780 + EX28DRAFT_4307 0.39 +0.9
110,781 - EX28DRAFT_4307 0.39 +0.1
110,888 - EX28DRAFT_4307 0.47 -1.4
110,888 - EX28DRAFT_4307 0.47 -0.0
110,890 + EX28DRAFT_4307 0.47 -0.8
110,891 - EX28DRAFT_4307 0.47 -0.6
110,891 - EX28DRAFT_4307 0.47 -1.2
110,891 - EX28DRAFT_4307 0.47 +0.3
111,011 + EX28DRAFT_4307 0.57 -0.8
111,011 + EX28DRAFT_4307 0.57 +1.0
111,012 - EX28DRAFT_4307 0.57 -0.1
111,012 - EX28DRAFT_4307 0.57 -0.5
111,012 - EX28DRAFT_4307 0.57 +0.1
111,149 - EX28DRAFT_4307 0.67 +0.1
111,152 - EX28DRAFT_4307 0.67 +0.2

Or see this region's nucleotide sequence