Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4074

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4072 and EX28DRAFT_4073 are separated by 169 nucleotidesEX28DRAFT_4073 and EX28DRAFT_4074 are separated by 37 nucleotidesEX28DRAFT_4074 and EX28DRAFT_4075 are separated by 317 nucleotidesEX28DRAFT_4075 and EX28DRAFT_4076 are separated by 167 nucleotides EX28DRAFT_4072: EX28DRAFT_4072 - Demethylmenaquinone methyltransferase, at 47,289 to 47,981 _4072 EX28DRAFT_4073: EX28DRAFT_4073 - transcriptional regulator, IclR family, at 48,151 to 48,888 _4073 EX28DRAFT_4074: EX28DRAFT_4074 - Sugar phosphate permease, at 48,926 to 50,260 _4074 EX28DRAFT_4075: EX28DRAFT_4075 - Ion channel, at 50,578 to 50,976 _4075 EX28DRAFT_4076: EX28DRAFT_4076 - integral membrane protein, TerC family, at 51,144 to 52,169 _4076 Position (kb) 48 49 50 51Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 47.981 kb on + strandat 47.981 kb on + strandat 47.982 kb on - strandat 47.982 kb on - strandat 48.059 kb on + strandat 48.088 kb on + strandat 48.088 kb on + strandat 48.089 kb on - strandat 48.118 kb on + strandat 48.147 kb on - strandat 48.170 kb on + strandat 48.310 kb on + strand, within EX28DRAFT_4073at 48.362 kb on - strand, within EX28DRAFT_4073at 48.376 kb on + strand, within EX28DRAFT_4073at 48.376 kb on + strand, within EX28DRAFT_4073at 48.460 kb on + strand, within EX28DRAFT_4073at 48.460 kb on + strand, within EX28DRAFT_4073at 48.461 kb on - strand, within EX28DRAFT_4073at 48.461 kb on - strand, within EX28DRAFT_4073at 48.578 kb on + strand, within EX28DRAFT_4073at 48.579 kb on - strand, within EX28DRAFT_4073at 48.579 kb on - strand, within EX28DRAFT_4073at 48.638 kb on - strand, within EX28DRAFT_4073at 48.773 kb on + strand, within EX28DRAFT_4073at 48.774 kb on - strand, within EX28DRAFT_4073at 48.829 kb on - strandat 49.042 kb on - strandat 49.064 kb on - strand, within EX28DRAFT_4074at 49.148 kb on - strand, within EX28DRAFT_4074at 49.205 kb on + strand, within EX28DRAFT_4074at 49.213 kb on + strand, within EX28DRAFT_4074at 49.213 kb on + strand, within EX28DRAFT_4074at 49.346 kb on + strand, within EX28DRAFT_4074at 49.346 kb on + strand, within EX28DRAFT_4074at 49.646 kb on - strand, within EX28DRAFT_4074at 49.660 kb on + strand, within EX28DRAFT_4074at 49.660 kb on + strand, within EX28DRAFT_4074at 49.665 kb on - strand, within EX28DRAFT_4074at 49.742 kb on + strand, within EX28DRAFT_4074at 49.743 kb on - strand, within EX28DRAFT_4074at 49.849 kb on - strand, within EX28DRAFT_4074at 49.908 kb on + strand, within EX28DRAFT_4074at 49.908 kb on + strand, within EX28DRAFT_4074at 49.909 kb on - strand, within EX28DRAFT_4074at 49.909 kb on - strand, within EX28DRAFT_4074at 49.939 kb on + strand, within EX28DRAFT_4074at 49.940 kb on - strand, within EX28DRAFT_4074at 49.969 kb on + strand, within EX28DRAFT_4074at 50.041 kb on - strand, within EX28DRAFT_4074at 50.052 kb on + strand, within EX28DRAFT_4074at 50.157 kb on + strandat 50.157 kb on + strandat 50.216 kb on + strandat 50.216 kb on + strandat 50.216 kb on + strandat 50.216 kb on + strandat 50.216 kb on + strandat 50.217 kb on - strandat 50.217 kb on - strandat 50.242 kb on + strandat 50.246 kb on + strandat 50.246 kb on + strandat 50.246 kb on + strandat 50.246 kb on + strandat 50.377 kb on + strandat 50.377 kb on + strandat 50.378 kb on - strandat 50.378 kb on - strandat 50.381 kb on + strandat 50.382 kb on - strandat 50.414 kb on - strandat 50.414 kb on - strandat 50.415 kb on + strandat 50.415 kb on + strandat 50.416 kb on - strandat 50.446 kb on + strandat 50.446 kb on + strandat 50.514 kb on + strandat 50.514 kb on + strandat 50.514 kb on + strandat 50.514 kb on + strandat 50.514 kb on + strandat 50.515 kb on - strandat 50.553 kb on + strandat 50.586 kb on - strandat 50.586 kb on - strandat 50.586 kb on - strandat 50.596 kb on - strandat 50.599 kb on - strandat 50.696 kb on + strand, within EX28DRAFT_4075at 50.768 kb on - strand, within EX28DRAFT_4075at 50.787 kb on + strand, within EX28DRAFT_4075at 50.828 kb on - strand, within EX28DRAFT_4075at 50.901 kb on - strand, within EX28DRAFT_4075at 51.005 kb on - strandat 51.009 kb on + strandat 51.010 kb on - strandat 51.010 kb on - strandat 51.014 kb on + strandat 51.014 kb on + strandat 51.015 kb on - strandat 51.143 kb on + strandat 51.143 kb on + strandat 51.143 kb on + strandat 51.143 kb on + strandat 51.144 kb on - strandat 51.144 kb on - strandat 51.231 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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47,981 + -0.4
47,981 + +1.0
47,982 - -0.6
47,982 - -0.6
48,059 + +1.0
48,088 + -1.0
48,088 + +0.4
48,089 - +0.5
48,118 + -0.2
48,147 - +0.9
48,170 + -0.2
48,310 + EX28DRAFT_4073 0.22 +0.1
48,362 - EX28DRAFT_4073 0.29 -0.0
48,376 + EX28DRAFT_4073 0.30 +0.2
48,376 + EX28DRAFT_4073 0.30 -0.3
48,460 + EX28DRAFT_4073 0.42 +0.6
48,460 + EX28DRAFT_4073 0.42 +0.3
48,461 - EX28DRAFT_4073 0.42 +0.0
48,461 - EX28DRAFT_4073 0.42 +0.4
48,578 + EX28DRAFT_4073 0.58 -3.3
48,579 - EX28DRAFT_4073 0.58 -0.4
48,579 - EX28DRAFT_4073 0.58 -3.9
48,638 - EX28DRAFT_4073 0.66 +0.2
48,773 + EX28DRAFT_4073 0.84 +0.1
48,774 - EX28DRAFT_4073 0.84 -1.6
48,829 - +0.0
49,042 - +0.5
49,064 - EX28DRAFT_4074 0.10 +1.8
49,148 - EX28DRAFT_4074 0.17 +0.0
49,205 + EX28DRAFT_4074 0.21 +0.1
49,213 + EX28DRAFT_4074 0.21 -0.6
49,213 + EX28DRAFT_4074 0.21 +0.4
49,346 + EX28DRAFT_4074 0.31 -0.6
49,346 + EX28DRAFT_4074 0.31 -0.6
49,646 - EX28DRAFT_4074 0.54 -0.2
49,660 + EX28DRAFT_4074 0.55 +0.1
49,660 + EX28DRAFT_4074 0.55 +0.1
49,665 - EX28DRAFT_4074 0.55 +0.6
49,742 + EX28DRAFT_4074 0.61 -0.5
49,743 - EX28DRAFT_4074 0.61 -0.5
49,849 - EX28DRAFT_4074 0.69 +0.3
49,908 + EX28DRAFT_4074 0.74 -0.2
49,908 + EX28DRAFT_4074 0.74 -0.4
49,909 - EX28DRAFT_4074 0.74 -0.3
49,909 - EX28DRAFT_4074 0.74 -0.1
49,939 + EX28DRAFT_4074 0.76 +0.1
49,940 - EX28DRAFT_4074 0.76 +1.5
49,969 + EX28DRAFT_4074 0.78 -0.4
50,041 - EX28DRAFT_4074 0.84 +0.1
50,052 + EX28DRAFT_4074 0.84 -1.5
50,157 + +0.2
50,157 + +0.1
50,216 + -0.0
50,216 + +0.1
50,216 + -0.2
50,216 + -0.2
50,216 + +0.2
50,217 - +0.7
50,217 - -0.0
50,242 + -2.9
50,246 + +0.6
50,246 + +0.2
50,246 + -0.5
50,246 + +1.4
50,377 + -0.7
50,377 + +0.5
50,378 - -0.1
50,378 - +0.6
50,381 + -0.3
50,382 - -0.3
50,414 - +0.2
50,414 - +0.3
50,415 + -2.8
50,415 + -1.3
50,416 - +1.0
50,446 + -0.0
50,446 + +0.2
50,514 + +0.2
50,514 + +0.4
50,514 + -0.0
50,514 + +0.1
50,514 + -0.4
50,515 - +0.7
50,553 + -3.8
50,586 - -0.3
50,586 - -0.1
50,586 - -0.7
50,596 - +0.8
50,599 - +0.2
50,696 + EX28DRAFT_4075 0.30 +0.8
50,768 - EX28DRAFT_4075 0.48 +0.2
50,787 + EX28DRAFT_4075 0.52 -0.3
50,828 - EX28DRAFT_4075 0.63 -1.6
50,901 - EX28DRAFT_4075 0.81 +0.0
51,005 - -0.1
51,009 + -1.7
51,010 - -0.1
51,010 - -0.7
51,014 + -0.2
51,014 + +0.5
51,015 - -0.4
51,143 + +0.7
51,143 + +0.5
51,143 + +0.7
51,143 + -0.1
51,144 - +0.1
51,144 - +1.0
51,231 - -2.8

Or see this region's nucleotide sequence