Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3804

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3803 and EX28DRAFT_3804 are separated by 161 nucleotidesEX28DRAFT_3804 and EX28DRAFT_3805 are separated by 620 nucleotidesEX28DRAFT_3805 and EX28DRAFT_3806 are separated by 91 nucleotides EX28DRAFT_3803: EX28DRAFT_3803 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 5,592 to 6,611 _3803 EX28DRAFT_3804: EX28DRAFT_3804 - ABC-type dipeptide transport system, periplasmic component, at 6,773 to 8,380 _3804 EX28DRAFT_3805: EX28DRAFT_3805 - tRNA, at 9,001 to 9,077 _3805 EX28DRAFT_3806: EX28DRAFT_3806 - Predicted membrane-associated, metal-dependent hydrolase, at 9,169 to 10,863 _3806 Position (kb) 6 7 8 9Strain fitness (log2 ratio) -1 0 1at 5.840 kb on + strand, within EX28DRAFT_3803at 5.903 kb on + strand, within EX28DRAFT_3803at 5.905 kb on + strand, within EX28DRAFT_3803at 6.041 kb on + strand, within EX28DRAFT_3803at 6.060 kb on - strand, within EX28DRAFT_3803at 6.098 kb on + strand, within EX28DRAFT_3803at 6.098 kb on + strand, within EX28DRAFT_3803at 6.179 kb on + strand, within EX28DRAFT_3803at 6.378 kb on + strand, within EX28DRAFT_3803at 6.404 kb on + strand, within EX28DRAFT_3803at 6.404 kb on + strand, within EX28DRAFT_3803at 6.404 kb on + strand, within EX28DRAFT_3803at 6.404 kb on + strand, within EX28DRAFT_3803at 6.405 kb on - strand, within EX28DRAFT_3803at 6.405 kb on - strand, within EX28DRAFT_3803at 6.406 kb on + strand, within EX28DRAFT_3803at 6.406 kb on + strand, within EX28DRAFT_3803at 6.407 kb on - strand, within EX28DRAFT_3803at 6.407 kb on - strand, within EX28DRAFT_3803at 6.482 kb on + strand, within EX28DRAFT_3803at 6.500 kb on + strand, within EX28DRAFT_3803at 6.501 kb on - strand, within EX28DRAFT_3803at 6.527 kb on + strandat 6.528 kb on - strandat 6.611 kb on + strandat 6.674 kb on - strandat 6.767 kb on + strandat 6.771 kb on + strandat 6.771 kb on + strandat 6.771 kb on + strandat 6.785 kb on + strandat 6.785 kb on + strandat 6.786 kb on - strandat 6.902 kb on - strandat 6.931 kb on + strandat 6.932 kb on - strandat 6.990 kb on + strand, within EX28DRAFT_3804at 6.990 kb on + strand, within EX28DRAFT_3804at 7.006 kb on - strand, within EX28DRAFT_3804at 7.009 kb on + strand, within EX28DRAFT_3804at 7.010 kb on - strand, within EX28DRAFT_3804at 7.147 kb on - strand, within EX28DRAFT_3804at 7.207 kb on + strand, within EX28DRAFT_3804at 7.227 kb on + strand, within EX28DRAFT_3804at 7.320 kb on + strand, within EX28DRAFT_3804at 7.320 kb on + strand, within EX28DRAFT_3804at 7.320 kb on + strand, within EX28DRAFT_3804at 7.320 kb on + strand, within EX28DRAFT_3804at 7.320 kb on + strand, within EX28DRAFT_3804at 7.320 kb on + strand, within EX28DRAFT_3804at 7.320 kb on + strand, within EX28DRAFT_3804at 7.321 kb on - strand, within EX28DRAFT_3804at 7.321 kb on - strand, within EX28DRAFT_3804at 7.321 kb on - strand, within EX28DRAFT_3804at 7.321 kb on - strand, within EX28DRAFT_3804at 7.326 kb on + strand, within EX28DRAFT_3804at 7.326 kb on + strand, within EX28DRAFT_3804at 7.347 kb on + strand, within EX28DRAFT_3804at 7.347 kb on + strand, within EX28DRAFT_3804at 7.348 kb on - strand, within EX28DRAFT_3804at 7.438 kb on - strand, within EX28DRAFT_3804at 7.501 kb on - strand, within EX28DRAFT_3804at 7.589 kb on + strand, within EX28DRAFT_3804at 7.590 kb on - strand, within EX28DRAFT_3804at 7.703 kb on - strand, within EX28DRAFT_3804at 7.704 kb on + strand, within EX28DRAFT_3804at 7.705 kb on - strand, within EX28DRAFT_3804at 7.705 kb on - strand, within EX28DRAFT_3804at 7.813 kb on - strand, within EX28DRAFT_3804at 7.901 kb on - strand, within EX28DRAFT_3804at 7.956 kb on + strand, within EX28DRAFT_3804at 7.956 kb on + strand, within EX28DRAFT_3804at 7.957 kb on - strand, within EX28DRAFT_3804at 7.962 kb on + strand, within EX28DRAFT_3804at 7.962 kb on + strand, within EX28DRAFT_3804at 7.962 kb on + strand, within EX28DRAFT_3804at 7.963 kb on - strand, within EX28DRAFT_3804at 7.963 kb on - strand, within EX28DRAFT_3804at 7.963 kb on - strand, within EX28DRAFT_3804at 8.109 kb on + strand, within EX28DRAFT_3804at 8.199 kb on + strand, within EX28DRAFT_3804at 8.199 kb on + strand, within EX28DRAFT_3804at 8.199 kb on + strand, within EX28DRAFT_3804at 8.200 kb on - strand, within EX28DRAFT_3804at 8.200 kb on - strand, within EX28DRAFT_3804at 8.200 kb on - strand, within EX28DRAFT_3804at 8.200 kb on - strand, within EX28DRAFT_3804at 8.200 kb on - strand, within EX28DRAFT_3804at 8.240 kb on - strandat 8.284 kb on - strandat 8.284 kb on - strandat 8.374 kb on + strandat 8.434 kb on - strandat 8.584 kb on - strandat 8.675 kb on + strandat 8.772 kb on - strandat 8.833 kb on - strandat 8.857 kb on + strandat 8.857 kb on + strandat 8.857 kb on + strandat 8.859 kb on + strandat 8.950 kb on - strandat 8.950 kb on - strandat 9.095 kb on - strandat 9.170 kb on + strandat 9.204 kb on + strandat 9.204 kb on + strandat 9.246 kb on + strandat 9.247 kb on - strandat 9.247 kb on - strandat 9.264 kb on + strandat 9.276 kb on - strandat 9.362 kb on + strand, within EX28DRAFT_3806at 9.363 kb on - strand, within EX28DRAFT_3806at 9.366 kb on + strand, within EX28DRAFT_3806

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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5,840 + EX28DRAFT_3803 0.24 +0.4
5,903 + EX28DRAFT_3803 0.30 +0.7
5,905 + EX28DRAFT_3803 0.31 -0.1
6,041 + EX28DRAFT_3803 0.44 +0.6
6,060 - EX28DRAFT_3803 0.46 +0.2
6,098 + EX28DRAFT_3803 0.50 +0.1
6,098 + EX28DRAFT_3803 0.50 +0.8
6,179 + EX28DRAFT_3803 0.58 -0.4
6,378 + EX28DRAFT_3803 0.77 +0.1
6,404 + EX28DRAFT_3803 0.80 -0.3
6,404 + EX28DRAFT_3803 0.80 +0.9
6,404 + EX28DRAFT_3803 0.80 -0.4
6,404 + EX28DRAFT_3803 0.80 -0.2
6,405 - EX28DRAFT_3803 0.80 -0.2
6,405 - EX28DRAFT_3803 0.80 -0.0
6,406 + EX28DRAFT_3803 0.80 -0.4
6,406 + EX28DRAFT_3803 0.80 -0.0
6,407 - EX28DRAFT_3803 0.80 +0.2
6,407 - EX28DRAFT_3803 0.80 +1.1
6,482 + EX28DRAFT_3803 0.87 -0.2
6,500 + EX28DRAFT_3803 0.89 +1.0
6,501 - EX28DRAFT_3803 0.89 -0.1
6,527 + -0.2
6,528 - -0.7
6,611 + -0.1
6,674 - +0.4
6,767 + -0.3
6,771 + +1.2
6,771 + +0.5
6,771 + +0.2
6,785 + +0.8
6,785 + -0.4
6,786 - +0.1
6,902 - +0.0
6,931 + +0.1
6,932 - +0.0
6,990 + EX28DRAFT_3804 0.13 +1.2
6,990 + EX28DRAFT_3804 0.13 +0.4
7,006 - EX28DRAFT_3804 0.14 +0.2
7,009 + EX28DRAFT_3804 0.15 +1.4
7,010 - EX28DRAFT_3804 0.15 -1.6
7,147 - EX28DRAFT_3804 0.23 +0.4
7,207 + EX28DRAFT_3804 0.27 -0.3
7,227 + EX28DRAFT_3804 0.28 +0.0
7,320 + EX28DRAFT_3804 0.34 -0.2
7,320 + EX28DRAFT_3804 0.34 +0.4
7,320 + EX28DRAFT_3804 0.34 -0.6
7,320 + EX28DRAFT_3804 0.34 +0.1
7,320 + EX28DRAFT_3804 0.34 -1.4
7,320 + EX28DRAFT_3804 0.34 +0.4
7,320 + EX28DRAFT_3804 0.34 -0.6
7,321 - EX28DRAFT_3804 0.34 +1.2
7,321 - EX28DRAFT_3804 0.34 +0.1
7,321 - EX28DRAFT_3804 0.34 +0.5
7,321 - EX28DRAFT_3804 0.34 +0.6
7,326 + EX28DRAFT_3804 0.34 +0.2
7,326 + EX28DRAFT_3804 0.34 +0.6
7,347 + EX28DRAFT_3804 0.36 +0.6
7,347 + EX28DRAFT_3804 0.36 +0.0
7,348 - EX28DRAFT_3804 0.36 -0.1
7,438 - EX28DRAFT_3804 0.41 +0.0
7,501 - EX28DRAFT_3804 0.45 +0.6
7,589 + EX28DRAFT_3804 0.51 +0.1
7,590 - EX28DRAFT_3804 0.51 +0.3
7,703 - EX28DRAFT_3804 0.58 +0.2
7,704 + EX28DRAFT_3804 0.58 -1.0
7,705 - EX28DRAFT_3804 0.58 +0.5
7,705 - EX28DRAFT_3804 0.58 +0.0
7,813 - EX28DRAFT_3804 0.65 +0.1
7,901 - EX28DRAFT_3804 0.70 +0.3
7,956 + EX28DRAFT_3804 0.74 +0.2
7,956 + EX28DRAFT_3804 0.74 -0.4
7,957 - EX28DRAFT_3804 0.74 +0.3
7,962 + EX28DRAFT_3804 0.74 +0.2
7,962 + EX28DRAFT_3804 0.74 +1.3
7,962 + EX28DRAFT_3804 0.74 +1.1
7,963 - EX28DRAFT_3804 0.74 +0.6
7,963 - EX28DRAFT_3804 0.74 +1.1
7,963 - EX28DRAFT_3804 0.74 +0.2
8,109 + EX28DRAFT_3804 0.83 +0.6
8,199 + EX28DRAFT_3804 0.89 +0.2
8,199 + EX28DRAFT_3804 0.89 +0.5
8,199 + EX28DRAFT_3804 0.89 +0.2
8,200 - EX28DRAFT_3804 0.89 +0.5
8,200 - EX28DRAFT_3804 0.89 +0.4
8,200 - EX28DRAFT_3804 0.89 +1.4
8,200 - EX28DRAFT_3804 0.89 -0.1
8,200 - EX28DRAFT_3804 0.89 +0.0
8,240 - +0.2
8,284 - -0.2
8,284 - +0.4
8,374 + +0.9
8,434 - +0.0
8,584 - +0.1
8,675 + -0.0
8,772 - +0.5
8,833 - -1.1
8,857 + +0.0
8,857 + -0.6
8,857 + -0.2
8,859 + +0.3
8,950 - -0.7
8,950 - +0.5
9,095 - -1.5
9,170 + +0.1
9,204 + -0.7
9,204 + -0.3
9,246 + -0.7
9,247 - +0.4
9,247 - -0.2
9,264 + -0.1
9,276 - -0.1
9,362 + EX28DRAFT_3806 0.11 +0.2
9,363 - EX28DRAFT_3806 0.11 -0.4
9,366 + EX28DRAFT_3806 0.12 -0.1

Or see this region's nucleotide sequence