Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3721

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3720 and EX28DRAFT_3721 are separated by 136 nucleotidesEX28DRAFT_3721 and EX28DRAFT_3722 are separated by 208 nucleotidesEX28DRAFT_3722 and EX28DRAFT_3723 are separated by 61 nucleotides EX28DRAFT_3720: EX28DRAFT_3720 - Putative multicopper oxidases, at 394,650 to 396,257 _3720 EX28DRAFT_3721: EX28DRAFT_3721 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 396,394 to 398,784 _3721 EX28DRAFT_3722: EX28DRAFT_3722 - hypoxanthine phosphoribosyltransferase, at 398,993 to 399,529 _3722 EX28DRAFT_3723: EX28DRAFT_3723 - Carbonic anhydrase, at 399,591 to 400,253 _3723 Position (kb) 396 397 398 399Strain fitness (log2 ratio) -2 -1 0 1 2at 395.452 kb on - strand, within EX28DRAFT_3720at 395.546 kb on + strand, within EX28DRAFT_3720at 395.642 kb on + strand, within EX28DRAFT_3720at 395.684 kb on + strand, within EX28DRAFT_3720at 395.684 kb on + strand, within EX28DRAFT_3720at 395.684 kb on + strand, within EX28DRAFT_3720at 395.727 kb on - strand, within EX28DRAFT_3720at 395.769 kb on - strand, within EX28DRAFT_3720at 396.192 kb on + strandat 396.192 kb on + strandat 396.193 kb on - strandat 396.195 kb on - strandat 396.419 kb on + strandat 396.431 kb on + strandat 396.432 kb on - strandat 396.432 kb on - strandat 396.485 kb on + strandat 396.486 kb on - strandat 396.506 kb on + strandat 396.506 kb on + strandat 396.506 kb on + strandat 396.506 kb on + strandat 396.506 kb on + strandat 396.590 kb on + strandat 396.591 kb on - strandat 396.591 kb on - strandat 396.595 kb on - strandat 396.595 kb on - strandat 396.660 kb on + strand, within EX28DRAFT_3721at 396.666 kb on + strand, within EX28DRAFT_3721at 396.666 kb on + strand, within EX28DRAFT_3721at 396.771 kb on + strand, within EX28DRAFT_3721at 396.771 kb on + strand, within EX28DRAFT_3721at 396.771 kb on + strand, within EX28DRAFT_3721at 396.771 kb on + strand, within EX28DRAFT_3721at 396.772 kb on - strand, within EX28DRAFT_3721at 396.772 kb on - strand, within EX28DRAFT_3721at 396.772 kb on - strand, within EX28DRAFT_3721at 396.772 kb on - strand, within EX28DRAFT_3721at 396.772 kb on - strand, within EX28DRAFT_3721at 396.772 kb on - strand, within EX28DRAFT_3721at 396.773 kb on + strand, within EX28DRAFT_3721at 396.774 kb on - strand, within EX28DRAFT_3721at 396.774 kb on - strand, within EX28DRAFT_3721at 397.211 kb on + strand, within EX28DRAFT_3721at 397.415 kb on + strand, within EX28DRAFT_3721at 397.416 kb on - strand, within EX28DRAFT_3721at 397.535 kb on + strand, within EX28DRAFT_3721at 397.559 kb on + strand, within EX28DRAFT_3721at 397.787 kb on + strand, within EX28DRAFT_3721at 398.095 kb on - strand, within EX28DRAFT_3721at 398.103 kb on - strand, within EX28DRAFT_3721at 398.109 kb on + strand, within EX28DRAFT_3721at 398.110 kb on - strand, within EX28DRAFT_3721at 398.110 kb on - strand, within EX28DRAFT_3721at 398.110 kb on - strand, within EX28DRAFT_3721at 398.246 kb on + strand, within EX28DRAFT_3721at 398.273 kb on + strand, within EX28DRAFT_3721at 398.413 kb on + strand, within EX28DRAFT_3721at 398.414 kb on - strand, within EX28DRAFT_3721at 398.414 kb on - strand, within EX28DRAFT_3721at 398.583 kb on - strandat 398.607 kb on + strandat 398.618 kb on - strandat 398.618 kb on - strandat 398.740 kb on + strandat 398.785 kb on - strandat 398.794 kb on - strandat 398.814 kb on - strandat 398.828 kb on + strandat 398.828 kb on + strandat 398.832 kb on + strandat 398.832 kb on + strandat 398.832 kb on + strandat 398.832 kb on + strandat 398.832 kb on + strandat 398.833 kb on - strandat 398.833 kb on - strandat 398.834 kb on + strandat 398.835 kb on - strandat 398.877 kb on - strandat 398.877 kb on - strandat 398.910 kb on + strandat 398.910 kb on + strandat 398.911 kb on - strandat 398.911 kb on - strandat 399.527 kb on + strandat 399.593 kb on - strandat 399.596 kb on + strandat 399.612 kb on - strandat 399.612 kb on - strandat 399.713 kb on - strand, within EX28DRAFT_3723

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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395,452 - EX28DRAFT_3720 0.50 +0.3
395,546 + EX28DRAFT_3720 0.56 +0.6
395,642 + EX28DRAFT_3720 0.62 +0.4
395,684 + EX28DRAFT_3720 0.64 +0.9
395,684 + EX28DRAFT_3720 0.64 -0.2
395,684 + EX28DRAFT_3720 0.64 +1.0
395,727 - EX28DRAFT_3720 0.67 +1.4
395,769 - EX28DRAFT_3720 0.70 -0.3
396,192 + -0.2
396,192 + -1.0
396,193 - +0.3
396,195 - +0.3
396,419 + +0.3
396,431 + +1.2
396,432 - -1.0
396,432 - -0.6
396,485 + +0.2
396,486 - +0.1
396,506 + -0.2
396,506 + -0.0
396,506 + -0.4
396,506 + +0.2
396,506 + -0.4
396,590 + +1.3
396,591 - +0.1
396,591 - +0.2
396,595 - -0.4
396,595 - +1.1
396,660 + EX28DRAFT_3721 0.11 -0.1
396,666 + EX28DRAFT_3721 0.11 +0.1
396,666 + EX28DRAFT_3721 0.11 +0.4
396,771 + EX28DRAFT_3721 0.16 +0.1
396,771 + EX28DRAFT_3721 0.16 +0.3
396,771 + EX28DRAFT_3721 0.16 -0.3
396,771 + EX28DRAFT_3721 0.16 +0.1
396,772 - EX28DRAFT_3721 0.16 +0.5
396,772 - EX28DRAFT_3721 0.16 +0.3
396,772 - EX28DRAFT_3721 0.16 -0.0
396,772 - EX28DRAFT_3721 0.16 -0.7
396,772 - EX28DRAFT_3721 0.16 +0.2
396,772 - EX28DRAFT_3721 0.16 -0.1
396,773 + EX28DRAFT_3721 0.16 -0.7
396,774 - EX28DRAFT_3721 0.16 +0.3
396,774 - EX28DRAFT_3721 0.16 +0.4
397,211 + EX28DRAFT_3721 0.34 +0.0
397,415 + EX28DRAFT_3721 0.43 +0.0
397,416 - EX28DRAFT_3721 0.43 +0.2
397,535 + EX28DRAFT_3721 0.48 +0.2
397,559 + EX28DRAFT_3721 0.49 -2.4
397,787 + EX28DRAFT_3721 0.58 +0.6
398,095 - EX28DRAFT_3721 0.71 +0.6
398,103 - EX28DRAFT_3721 0.71 -0.9
398,109 + EX28DRAFT_3721 0.72 +0.2
398,110 - EX28DRAFT_3721 0.72 +0.1
398,110 - EX28DRAFT_3721 0.72 -0.3
398,110 - EX28DRAFT_3721 0.72 +0.3
398,246 + EX28DRAFT_3721 0.77 +1.4
398,273 + EX28DRAFT_3721 0.79 +0.3
398,413 + EX28DRAFT_3721 0.84 +1.7
398,414 - EX28DRAFT_3721 0.84 +0.6
398,414 - EX28DRAFT_3721 0.84 +0.2
398,583 - +0.3
398,607 + +0.5
398,618 - -0.0
398,618 - -1.8
398,740 + -0.6
398,785 - +0.2
398,794 - +0.3
398,814 - -0.0
398,828 + +0.4
398,828 + -1.8
398,832 + +0.1
398,832 + +0.5
398,832 + -0.7
398,832 + +1.2
398,832 + +0.6
398,833 - +0.5
398,833 - -0.3
398,834 + +0.4
398,835 - +0.8
398,877 - +0.2
398,877 - +0.6
398,910 + -0.5
398,910 + -0.2
398,911 - +0.3
398,911 - -0.0
399,527 + +2.7
399,593 - -0.1
399,596 + +0.0
399,612 - +0.4
399,612 - +0.3
399,713 - EX28DRAFT_3723 0.18 +0.5

Or see this region's nucleotide sequence