Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3511

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3510 and EX28DRAFT_3511 are separated by 61 nucleotidesEX28DRAFT_3511 and EX28DRAFT_3512 are separated by 176 nucleotidesEX28DRAFT_3512 and EX28DRAFT_3513 are separated by 84 nucleotides EX28DRAFT_3510: EX28DRAFT_3510 - Uncharacterized conserved protein, at 175,321 to 176,442 _3510 EX28DRAFT_3511: EX28DRAFT_3511 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 176,504 to 177,922 _3511 EX28DRAFT_3512: EX28DRAFT_3512 - Uncharacterized conserved small protein, at 178,099 to 178,260 _3512 EX28DRAFT_3513: EX28DRAFT_3513 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 178,345 to 179,733 _3513 Position (kb) 176 177 178Strain fitness (log2 ratio) -2 -1 0 1at 175.590 kb on + strand, within EX28DRAFT_3510at 175.590 kb on + strand, within EX28DRAFT_3510at 175.590 kb on + strand, within EX28DRAFT_3510at 175.591 kb on - strand, within EX28DRAFT_3510at 175.858 kb on + strand, within EX28DRAFT_3510at 175.859 kb on - strand, within EX28DRAFT_3510at 175.859 kb on - strand, within EX28DRAFT_3510at 175.913 kb on - strand, within EX28DRAFT_3510at 176.054 kb on - strand, within EX28DRAFT_3510at 176.054 kb on - strand, within EX28DRAFT_3510at 176.304 kb on - strand, within EX28DRAFT_3510at 176.423 kb on - strandat 176.440 kb on + strandat 176.788 kb on - strand, within EX28DRAFT_3511at 176.893 kb on + strand, within EX28DRAFT_3511at 176.934 kb on + strand, within EX28DRAFT_3511at 176.934 kb on + strand, within EX28DRAFT_3511at 176.934 kb on + strand, within EX28DRAFT_3511at 176.938 kb on - strand, within EX28DRAFT_3511at 176.999 kb on - strand, within EX28DRAFT_3511at 177.075 kb on + strand, within EX28DRAFT_3511at 177.498 kb on + strand, within EX28DRAFT_3511at 177.498 kb on + strand, within EX28DRAFT_3511at 177.498 kb on + strand, within EX28DRAFT_3511at 177.499 kb on - strand, within EX28DRAFT_3511at 177.499 kb on - strand, within EX28DRAFT_3511at 177.520 kb on + strand, within EX28DRAFT_3511at 177.732 kb on + strand, within EX28DRAFT_3511at 177.927 kb on + strandat 177.945 kb on + strandat 177.993 kb on + strandat 178.012 kb on + strandat 178.012 kb on + strandat 178.042 kb on + strandat 178.082 kb on - strandat 178.108 kb on + strandat 178.108 kb on + strandat 178.134 kb on + strand, within EX28DRAFT_3512at 178.135 kb on - strand, within EX28DRAFT_3512at 178.265 kb on - strandat 178.265 kb on - strandat 178.406 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.425 kb on - strandat 178.602 kb on - strand, within EX28DRAFT_3513at 178.796 kb on + strand, within EX28DRAFT_3513at 178.827 kb on + strand, within EX28DRAFT_3513at 178.828 kb on - strand, within EX28DRAFT_3513at 178.842 kb on + strand, within EX28DRAFT_3513at 178.919 kb on + strand, within EX28DRAFT_3513

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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175,590 + EX28DRAFT_3510 0.24 +1.0
175,590 + EX28DRAFT_3510 0.24 -0.1
175,590 + EX28DRAFT_3510 0.24 -0.9
175,591 - EX28DRAFT_3510 0.24 -0.4
175,858 + EX28DRAFT_3510 0.48 -0.2
175,859 - EX28DRAFT_3510 0.48 -1.3
175,859 - EX28DRAFT_3510 0.48 -0.3
175,913 - EX28DRAFT_3510 0.53 +0.1
176,054 - EX28DRAFT_3510 0.65 +0.7
176,054 - EX28DRAFT_3510 0.65 -0.8
176,304 - EX28DRAFT_3510 0.88 -0.6
176,423 - +0.1
176,440 + -0.4
176,788 - EX28DRAFT_3511 0.20 +0.5
176,893 + EX28DRAFT_3511 0.27 -0.1
176,934 + EX28DRAFT_3511 0.30 -0.4
176,934 + EX28DRAFT_3511 0.30 +0.2
176,934 + EX28DRAFT_3511 0.30 -1.4
176,938 - EX28DRAFT_3511 0.31 +0.7
176,999 - EX28DRAFT_3511 0.35 -1.1
177,075 + EX28DRAFT_3511 0.40 -0.0
177,498 + EX28DRAFT_3511 0.70 -0.2
177,498 + EX28DRAFT_3511 0.70 -0.4
177,498 + EX28DRAFT_3511 0.70 +0.1
177,499 - EX28DRAFT_3511 0.70 -0.5
177,499 - EX28DRAFT_3511 0.70 +0.2
177,520 + EX28DRAFT_3511 0.72 +0.2
177,732 + EX28DRAFT_3511 0.87 -0.0
177,927 + -0.0
177,945 + -2.1
177,993 + +0.3
178,012 + +0.2
178,012 + -0.3
178,042 + +0.1
178,082 - +0.5
178,108 + -1.8
178,108 + -0.4
178,134 + EX28DRAFT_3512 0.22 +0.0
178,135 - EX28DRAFT_3512 0.22 +0.2
178,265 - +0.4
178,265 - +0.3
178,406 + -0.2
178,422 + +0.5
178,422 + +0.5
178,425 - -1.0
178,602 - EX28DRAFT_3513 0.19 -0.6
178,796 + EX28DRAFT_3513 0.32 -1.0
178,827 + EX28DRAFT_3513 0.35 -0.2
178,828 - EX28DRAFT_3513 0.35 -0.4
178,842 + EX28DRAFT_3513 0.36 -0.4
178,919 + EX28DRAFT_3513 0.41 -0.1

Or see this region's nucleotide sequence