Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2920

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2919 and EX28DRAFT_2920 are separated by 203 nucleotidesEX28DRAFT_2920 and EX28DRAFT_2921 are separated by 313 nucleotides EX28DRAFT_2919: EX28DRAFT_2919 - Chain length determinant protein, at 229,487 to 230,611 _2919 EX28DRAFT_2920: EX28DRAFT_2920 - MFS transporter, sugar porter (SP) family, at 230,815 to 232,236 _2920 EX28DRAFT_2921: EX28DRAFT_2921 - 2-deoxy-D-gluconate 3-dehydrogenase, at 232,550 to 233,311 _2921 Position (kb) 230 231 232 233Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 229.826 kb on + strand, within EX28DRAFT_2919at 229.845 kb on + strand, within EX28DRAFT_2919at 229.890 kb on + strand, within EX28DRAFT_2919at 229.913 kb on - strand, within EX28DRAFT_2919at 229.913 kb on - strand, within EX28DRAFT_2919at 230.032 kb on + strand, within EX28DRAFT_2919at 230.035 kb on - strand, within EX28DRAFT_2919at 230.035 kb on - strand, within EX28DRAFT_2919at 230.043 kb on + strand, within EX28DRAFT_2919at 230.043 kb on + strand, within EX28DRAFT_2919at 230.044 kb on - strand, within EX28DRAFT_2919at 230.044 kb on - strand, within EX28DRAFT_2919at 230.236 kb on - strand, within EX28DRAFT_2919at 230.236 kb on - strand, within EX28DRAFT_2919at 230.236 kb on - strand, within EX28DRAFT_2919at 230.253 kb on + strand, within EX28DRAFT_2919at 230.290 kb on + strand, within EX28DRAFT_2919at 230.291 kb on - strand, within EX28DRAFT_2919at 230.291 kb on - strand, within EX28DRAFT_2919at 230.399 kb on - strand, within EX28DRAFT_2919at 230.410 kb on + strand, within EX28DRAFT_2919at 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.561 kb on - strandat 230.611 kb on + strandat 230.611 kb on + strandat 230.611 kb on + strandat 230.612 kb on - strandat 230.612 kb on - strandat 230.612 kb on - strandat 230.612 kb on - strandat 230.628 kb on - strandat 230.672 kb on + strandat 230.672 kb on + strandat 230.672 kb on + strandat 230.672 kb on + strandat 230.673 kb on - strandat 230.673 kb on - strandat 230.682 kb on + strandat 230.719 kb on + strandat 230.779 kb on - strandat 230.794 kb on + strandat 230.805 kb on + strandat 230.871 kb on + strandat 230.871 kb on + strandat 230.946 kb on + strandat 230.946 kb on + strandat 230.946 kb on + strandat 230.946 kb on + strandat 230.947 kb on - strandat 230.947 kb on - strandat 230.947 kb on - strandat 230.949 kb on - strandat 230.949 kb on - strandat 230.949 kb on - strandat 231.136 kb on - strand, within EX28DRAFT_2920at 231.136 kb on - strand, within EX28DRAFT_2920at 231.136 kb on - strand, within EX28DRAFT_2920at 231.247 kb on - strand, within EX28DRAFT_2920at 231.304 kb on - strand, within EX28DRAFT_2920at 231.404 kb on + strand, within EX28DRAFT_2920at 231.405 kb on - strand, within EX28DRAFT_2920at 231.405 kb on - strand, within EX28DRAFT_2920at 231.414 kb on + strand, within EX28DRAFT_2920at 231.414 kb on + strand, within EX28DRAFT_2920at 231.415 kb on - strand, within EX28DRAFT_2920at 231.415 kb on - strand, within EX28DRAFT_2920at 231.492 kb on + strand, within EX28DRAFT_2920at 231.492 kb on + strand, within EX28DRAFT_2920at 231.492 kb on + strand, within EX28DRAFT_2920at 231.493 kb on - strand, within EX28DRAFT_2920at 231.731 kb on + strand, within EX28DRAFT_2920at 231.731 kb on + strand, within EX28DRAFT_2920at 231.732 kb on - strand, within EX28DRAFT_2920at 231.759 kb on + strand, within EX28DRAFT_2920at 231.782 kb on + strand, within EX28DRAFT_2920at 231.782 kb on + strand, within EX28DRAFT_2920at 231.782 kb on + strand, within EX28DRAFT_2920at 231.782 kb on + strand, within EX28DRAFT_2920at 231.783 kb on - strand, within EX28DRAFT_2920at 231.783 kb on - strand, within EX28DRAFT_2920at 231.783 kb on - strand, within EX28DRAFT_2920at 231.834 kb on - strand, within EX28DRAFT_2920at 231.969 kb on + strand, within EX28DRAFT_2920at 231.972 kb on - strand, within EX28DRAFT_2920at 232.092 kb on + strand, within EX28DRAFT_2920at 232.093 kb on - strand, within EX28DRAFT_2920at 232.225 kb on + strandat 232.227 kb on + strandat 232.227 kb on + strandat 232.227 kb on + strandat 232.227 kb on + strandat 232.228 kb on - strandat 232.228 kb on - strandat 232.228 kb on - strandat 232.228 kb on - strandat 232.327 kb on - strandat 232.536 kb on + strandat 232.536 kb on + strandat 232.536 kb on + strandat 232.599 kb on + strandat 232.599 kb on + strandat 232.742 kb on - strand, within EX28DRAFT_2921at 232.742 kb on - strand, within EX28DRAFT_2921at 232.742 kb on - strand, within EX28DRAFT_2921at 232.744 kb on - strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.775 kb on - strand, within EX28DRAFT_2921at 232.775 kb on - strand, within EX28DRAFT_2921at 232.775 kb on - strand, within EX28DRAFT_2921at 232.839 kb on + strand, within EX28DRAFT_2921at 232.839 kb on + strand, within EX28DRAFT_2921at 232.840 kb on - strand, within EX28DRAFT_2921at 232.885 kb on + strand, within EX28DRAFT_2921at 232.960 kb on + strand, within EX28DRAFT_2921at 232.961 kb on - strand, within EX28DRAFT_2921at 233.170 kb on + strand, within EX28DRAFT_2921at 233.191 kb on + strand, within EX28DRAFT_2921at 233.192 kb on - strand, within EX28DRAFT_2921

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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229,826 + EX28DRAFT_2919 0.30 +0.0
229,845 + EX28DRAFT_2919 0.32 -0.1
229,890 + EX28DRAFT_2919 0.36 -0.3
229,913 - EX28DRAFT_2919 0.38 +0.2
229,913 - EX28DRAFT_2919 0.38 -0.2
230,032 + EX28DRAFT_2919 0.48 -1.0
230,035 - EX28DRAFT_2919 0.49 +0.2
230,035 - EX28DRAFT_2919 0.49 +0.6
230,043 + EX28DRAFT_2919 0.49 -1.0
230,043 + EX28DRAFT_2919 0.49 +0.2
230,044 - EX28DRAFT_2919 0.50 +0.3
230,044 - EX28DRAFT_2919 0.50 +0.5
230,236 - EX28DRAFT_2919 0.67 +0.5
230,236 - EX28DRAFT_2919 0.67 +0.6
230,236 - EX28DRAFT_2919 0.67 +0.6
230,253 + EX28DRAFT_2919 0.68 -0.9
230,290 + EX28DRAFT_2919 0.71 -0.2
230,291 - EX28DRAFT_2919 0.71 -0.0
230,291 - EX28DRAFT_2919 0.71 +0.4
230,399 - EX28DRAFT_2919 0.81 -0.8
230,410 + EX28DRAFT_2919 0.82 +0.4
230,560 + +0.3
230,560 + -0.6
230,560 + +0.5
230,560 + -0.1
230,561 - -0.1
230,611 + +0.3
230,611 + -0.6
230,611 + +0.2
230,612 - -0.1
230,612 - +0.4
230,612 - +0.5
230,612 - +1.0
230,628 - -1.8
230,672 + +0.1
230,672 + -0.6
230,672 + -0.2
230,672 + -1.4
230,673 - +0.2
230,673 - -0.3
230,682 + +0.2
230,719 + -0.5
230,779 - +1.2
230,794 + +0.6
230,805 + +0.2
230,871 + -0.6
230,871 + +1.8
230,946 + -1.1
230,946 + +3.3
230,946 + -0.6
230,946 + -1.8
230,947 - +0.8
230,947 - +0.4
230,947 - -0.9
230,949 - +0.4
230,949 - +0.1
230,949 - +0.2
231,136 - EX28DRAFT_2920 0.23 -0.3
231,136 - EX28DRAFT_2920 0.23 +0.1
231,136 - EX28DRAFT_2920 0.23 +0.8
231,247 - EX28DRAFT_2920 0.30 -0.6
231,304 - EX28DRAFT_2920 0.34 +0.2
231,404 + EX28DRAFT_2920 0.41 -0.8
231,405 - EX28DRAFT_2920 0.41 +0.2
231,405 - EX28DRAFT_2920 0.41 -0.3
231,414 + EX28DRAFT_2920 0.42 -0.1
231,414 + EX28DRAFT_2920 0.42 -1.8
231,415 - EX28DRAFT_2920 0.42 +0.5
231,415 - EX28DRAFT_2920 0.42 +0.3
231,492 + EX28DRAFT_2920 0.48 +0.3
231,492 + EX28DRAFT_2920 0.48 -0.8
231,492 + EX28DRAFT_2920 0.48 -0.2
231,493 - EX28DRAFT_2920 0.48 -0.0
231,731 + EX28DRAFT_2920 0.64 -0.1
231,731 + EX28DRAFT_2920 0.64 +0.0
231,732 - EX28DRAFT_2920 0.64 -0.1
231,759 + EX28DRAFT_2920 0.66 -0.3
231,782 + EX28DRAFT_2920 0.68 -0.1
231,782 + EX28DRAFT_2920 0.68 -1.1
231,782 + EX28DRAFT_2920 0.68 +0.3
231,782 + EX28DRAFT_2920 0.68 -0.4
231,783 - EX28DRAFT_2920 0.68 +0.2
231,783 - EX28DRAFT_2920 0.68 +0.7
231,783 - EX28DRAFT_2920 0.68 -0.7
231,834 - EX28DRAFT_2920 0.72 -0.3
231,969 + EX28DRAFT_2920 0.81 +0.6
231,972 - EX28DRAFT_2920 0.81 -1.9
232,092 + EX28DRAFT_2920 0.90 +0.4
232,093 - EX28DRAFT_2920 0.90 +0.0
232,225 + +0.0
232,227 + -0.2
232,227 + -0.1
232,227 + +0.3
232,227 + +0.8
232,228 - +0.1
232,228 - +0.4
232,228 - +0.2
232,228 - -0.2
232,327 - +0.0
232,536 + -0.8
232,536 + -1.1
232,536 + -0.3
232,599 + +0.3
232,599 + -3.4
232,742 - EX28DRAFT_2921 0.25 +0.2
232,742 - EX28DRAFT_2921 0.25 +0.8
232,742 - EX28DRAFT_2921 0.25 +0.6
232,744 - EX28DRAFT_2921 0.25 -0.2
232,774 + EX28DRAFT_2921 0.29 +0.4
232,774 + EX28DRAFT_2921 0.29 -0.5
232,774 + EX28DRAFT_2921 0.29 +0.2
232,774 + EX28DRAFT_2921 0.29 +0.3
232,774 + EX28DRAFT_2921 0.29 +0.5
232,775 - EX28DRAFT_2921 0.30 +0.3
232,775 - EX28DRAFT_2921 0.30 +0.2
232,775 - EX28DRAFT_2921 0.30 +0.0
232,839 + EX28DRAFT_2921 0.38 -0.0
232,839 + EX28DRAFT_2921 0.38 +0.3
232,840 - EX28DRAFT_2921 0.38 -0.0
232,885 + EX28DRAFT_2921 0.44 -0.2
232,960 + EX28DRAFT_2921 0.54 -0.2
232,961 - EX28DRAFT_2921 0.54 +0.2
233,170 + EX28DRAFT_2921 0.81 +0.1
233,191 + EX28DRAFT_2921 0.84 -0.1
233,192 - EX28DRAFT_2921 0.84 -0.4

Or see this region's nucleotide sequence