Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2590

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2588 and EX28DRAFT_2589 are separated by 99 nucleotidesEX28DRAFT_2589 and EX28DRAFT_2590 are separated by 210 nucleotidesEX28DRAFT_2590 and EX28DRAFT_2591 are separated by 168 nucleotidesEX28DRAFT_2591 and EX28DRAFT_2592 are separated by 103 nucleotides EX28DRAFT_2588: EX28DRAFT_2588 - Alkaline phosphatase, at 2,622,565 to 2,623,980 _2588 EX28DRAFT_2589: EX28DRAFT_2589 - Sigma-S stabilisation anti-adaptor protein, at 2,624,080 to 2,624,340 _2589 EX28DRAFT_2590: EX28DRAFT_2590 - Arabinose efflux permease, at 2,624,551 to 2,625,765 _2590 EX28DRAFT_2591: EX28DRAFT_2591 - Uncharacterized protein conserved in bacteria, at 2,625,934 to 2,626,617 _2591 EX28DRAFT_2592: EX28DRAFT_2592 - D-alanine--D-alanine ligase, at 2,626,721 to 2,627,821 _2592 Position (kb) 2624 2625 2626Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2623.663 kb on - strand, within EX28DRAFT_2588at 2623.664 kb on + strand, within EX28DRAFT_2588at 2623.665 kb on - strand, within EX28DRAFT_2588at 2623.922 kb on + strandat 2623.996 kb on + strandat 2624.003 kb on - strandat 2624.003 kb on - strandat 2624.007 kb on - strandat 2624.027 kb on + strandat 2624.029 kb on + strandat 2624.029 kb on + strandat 2624.030 kb on - strandat 2624.030 kb on - strandat 2624.030 kb on - strandat 2624.052 kb on - strandat 2624.065 kb on - strandat 2624.111 kb on - strand, within EX28DRAFT_2589at 2624.501 kb on + strandat 2624.505 kb on + strandat 2624.506 kb on - strandat 2624.616 kb on + strandat 2624.650 kb on + strandat 2624.718 kb on - strand, within EX28DRAFT_2590at 2624.718 kb on - strand, within EX28DRAFT_2590at 2624.721 kb on + strand, within EX28DRAFT_2590at 2624.721 kb on + strand, within EX28DRAFT_2590at 2624.721 kb on + strand, within EX28DRAFT_2590at 2624.722 kb on - strand, within EX28DRAFT_2590at 2624.733 kb on + strand, within EX28DRAFT_2590at 2624.733 kb on + strand, within EX28DRAFT_2590at 2624.733 kb on + strand, within EX28DRAFT_2590at 2624.736 kb on - strand, within EX28DRAFT_2590at 2624.746 kb on - strand, within EX28DRAFT_2590at 2624.771 kb on + strand, within EX28DRAFT_2590at 2625.103 kb on - strand, within EX28DRAFT_2590at 2625.184 kb on - strand, within EX28DRAFT_2590at 2625.264 kb on + strand, within EX28DRAFT_2590at 2625.264 kb on + strand, within EX28DRAFT_2590at 2625.264 kb on + strand, within EX28DRAFT_2590at 2625.265 kb on - strand, within EX28DRAFT_2590at 2625.265 kb on - strand, within EX28DRAFT_2590at 2625.265 kb on - strand, within EX28DRAFT_2590at 2625.268 kb on + strand, within EX28DRAFT_2590at 2625.355 kb on - strand, within EX28DRAFT_2590at 2625.671 kb on + strandat 2625.672 kb on - strandat 2625.774 kb on - strandat 2625.866 kb on + strandat 2625.866 kb on + strandat 2625.867 kb on - strandat 2625.925 kb on + strandat 2625.928 kb on + strandat 2625.928 kb on + strandat 2625.994 kb on - strandat 2625.995 kb on + strandat 2625.995 kb on + strandat 2626.482 kb on + strand, within EX28DRAFT_2591at 2626.482 kb on + strand, within EX28DRAFT_2591at 2626.482 kb on + strand, within EX28DRAFT_2591at 2626.482 kb on + strand, within EX28DRAFT_2591at 2626.482 kb on + strand, within EX28DRAFT_2591at 2626.483 kb on - strand, within EX28DRAFT_2591at 2626.483 kb on - strand, within EX28DRAFT_2591at 2626.483 kb on - strand, within EX28DRAFT_2591at 2626.483 kb on - strand, within EX28DRAFT_2591at 2626.484 kb on + strand, within EX28DRAFT_2591at 2626.485 kb on - strand, within EX28DRAFT_2591at 2626.495 kb on - strand, within EX28DRAFT_2591at 2626.528 kb on - strand, within EX28DRAFT_2591at 2626.539 kb on - strand, within EX28DRAFT_2591at 2626.539 kb on - strand, within EX28DRAFT_2591at 2626.540 kb on - strand, within EX28DRAFT_2591at 2626.541 kb on + strand, within EX28DRAFT_2591at 2626.683 kb on + strandat 2626.683 kb on + strandat 2626.683 kb on + strandat 2626.684 kb on - strandat 2626.684 kb on - strandat 2626.684 kb on - strandat 2626.689 kb on - strandat 2626.689 kb on - strandat 2626.727 kb on - strandat 2626.741 kb on + strandat 2626.742 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,623,663 - EX28DRAFT_2588 0.78 -1.3
2,623,664 + EX28DRAFT_2588 0.78 +0.1
2,623,665 - EX28DRAFT_2588 0.78 -0.4
2,623,922 + -1.0
2,623,996 + -0.5
2,624,003 - -0.9
2,624,003 - +0.3
2,624,007 - -2.6
2,624,027 + -3.0
2,624,029 + +0.0
2,624,029 + -0.0
2,624,030 - -0.0
2,624,030 - +0.2
2,624,030 - +0.8
2,624,052 - +0.1
2,624,065 - -0.5
2,624,111 - EX28DRAFT_2589 0.12 -0.1
2,624,501 + -0.0
2,624,505 + +0.0
2,624,506 - +1.2
2,624,616 + -0.1
2,624,650 + -0.8
2,624,718 - EX28DRAFT_2590 0.14 +0.5
2,624,718 - EX28DRAFT_2590 0.14 +0.0
2,624,721 + EX28DRAFT_2590 0.14 +0.7
2,624,721 + EX28DRAFT_2590 0.14 -1.0
2,624,721 + EX28DRAFT_2590 0.14 +0.4
2,624,722 - EX28DRAFT_2590 0.14 +0.4
2,624,733 + EX28DRAFT_2590 0.15 +0.5
2,624,733 + EX28DRAFT_2590 0.15 -0.3
2,624,733 + EX28DRAFT_2590 0.15 +0.2
2,624,736 - EX28DRAFT_2590 0.15 +0.2
2,624,746 - EX28DRAFT_2590 0.16 -0.1
2,624,771 + EX28DRAFT_2590 0.18 -0.1
2,625,103 - EX28DRAFT_2590 0.45 -0.6
2,625,184 - EX28DRAFT_2590 0.52 +0.4
2,625,264 + EX28DRAFT_2590 0.59 +0.0
2,625,264 + EX28DRAFT_2590 0.59 +0.4
2,625,264 + EX28DRAFT_2590 0.59 +0.9
2,625,265 - EX28DRAFT_2590 0.59 +0.1
2,625,265 - EX28DRAFT_2590 0.59 +0.5
2,625,265 - EX28DRAFT_2590 0.59 -0.4
2,625,268 + EX28DRAFT_2590 0.59 +0.3
2,625,355 - EX28DRAFT_2590 0.66 +0.5
2,625,671 + +1.0
2,625,672 - +1.8
2,625,774 - +0.5
2,625,866 + +0.8
2,625,866 + -0.5
2,625,867 - +0.5
2,625,925 + +0.7
2,625,928 + +0.6
2,625,928 + +0.4
2,625,994 - +0.0
2,625,995 + +0.3
2,625,995 + +0.8
2,626,482 + EX28DRAFT_2591 0.80 +0.2
2,626,482 + EX28DRAFT_2591 0.80 +0.8
2,626,482 + EX28DRAFT_2591 0.80 -0.6
2,626,482 + EX28DRAFT_2591 0.80 -1.2
2,626,482 + EX28DRAFT_2591 0.80 -0.2
2,626,483 - EX28DRAFT_2591 0.80 -0.2
2,626,483 - EX28DRAFT_2591 0.80 -1.0
2,626,483 - EX28DRAFT_2591 0.80 +0.7
2,626,483 - EX28DRAFT_2591 0.80 +0.0
2,626,484 + EX28DRAFT_2591 0.80 -0.1
2,626,485 - EX28DRAFT_2591 0.81 +0.5
2,626,495 - EX28DRAFT_2591 0.82 +0.0
2,626,528 - EX28DRAFT_2591 0.87 +0.5
2,626,539 - EX28DRAFT_2591 0.88 -0.3
2,626,539 - EX28DRAFT_2591 0.88 -0.1
2,626,540 - EX28DRAFT_2591 0.89 -1.0
2,626,541 + EX28DRAFT_2591 0.89 +1.6
2,626,683 + -0.3
2,626,683 + +0.4
2,626,683 + +0.0
2,626,684 - +0.7
2,626,684 - +0.3
2,626,684 - -1.1
2,626,689 - -0.9
2,626,689 - -0.3
2,626,727 - +0.0
2,626,741 + -0.1
2,626,742 - +0.6

Or see this region's nucleotide sequence