Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2588 and EX28DRAFT_2589 are separated by 99 nucleotides EX28DRAFT_2589 and EX28DRAFT_2590 are separated by 210 nucleotides EX28DRAFT_2590 and EX28DRAFT_2591 are separated by 168 nucleotides EX28DRAFT_2591 and EX28DRAFT_2592 are separated by 103 nucleotides
EX28DRAFT_2588: EX28DRAFT_2588 - Alkaline phosphatase, at 2,622,565 to 2,623,980
_2588
EX28DRAFT_2589: EX28DRAFT_2589 - Sigma-S stabilisation anti-adaptor protein, at 2,624,080 to 2,624,340
_2589
EX28DRAFT_2590: EX28DRAFT_2590 - Arabinose efflux permease, at 2,624,551 to 2,625,765
_2590
EX28DRAFT_2591: EX28DRAFT_2591 - Uncharacterized protein conserved in bacteria, at 2,625,934 to 2,626,617
_2591
EX28DRAFT_2592: EX28DRAFT_2592 - D-alanine--D-alanine ligase, at 2,626,721 to 2,627,821
_2592
Position (kb)
2624
2625
2626 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2623.663 kb on - strand, within EX28DRAFT_2588 at 2623.664 kb on + strand, within EX28DRAFT_2588 at 2623.665 kb on - strand, within EX28DRAFT_2588 at 2623.922 kb on + strand at 2623.996 kb on + strand at 2624.003 kb on - strand at 2624.003 kb on - strand at 2624.007 kb on - strand at 2624.027 kb on + strand at 2624.029 kb on + strand at 2624.029 kb on + strand at 2624.030 kb on - strand at 2624.030 kb on - strand at 2624.030 kb on - strand at 2624.052 kb on - strand at 2624.065 kb on - strand at 2624.111 kb on - strand, within EX28DRAFT_2589 at 2624.501 kb on + strand at 2624.505 kb on + strand at 2624.506 kb on - strand at 2624.616 kb on + strand at 2624.650 kb on + strand at 2624.718 kb on - strand, within EX28DRAFT_2590 at 2624.718 kb on - strand, within EX28DRAFT_2590 at 2624.721 kb on + strand, within EX28DRAFT_2590 at 2624.721 kb on + strand, within EX28DRAFT_2590 at 2624.721 kb on + strand, within EX28DRAFT_2590 at 2624.722 kb on - strand, within EX28DRAFT_2590 at 2624.733 kb on + strand, within EX28DRAFT_2590 at 2624.733 kb on + strand, within EX28DRAFT_2590 at 2624.733 kb on + strand, within EX28DRAFT_2590 at 2624.736 kb on - strand, within EX28DRAFT_2590 at 2624.746 kb on - strand, within EX28DRAFT_2590 at 2624.771 kb on + strand, within EX28DRAFT_2590 at 2625.103 kb on - strand, within EX28DRAFT_2590 at 2625.184 kb on - strand, within EX28DRAFT_2590 at 2625.264 kb on + strand, within EX28DRAFT_2590 at 2625.264 kb on + strand, within EX28DRAFT_2590 at 2625.264 kb on + strand, within EX28DRAFT_2590 at 2625.265 kb on - strand, within EX28DRAFT_2590 at 2625.265 kb on - strand, within EX28DRAFT_2590 at 2625.265 kb on - strand, within EX28DRAFT_2590 at 2625.268 kb on + strand, within EX28DRAFT_2590 at 2625.355 kb on - strand, within EX28DRAFT_2590 at 2625.671 kb on + strand at 2625.672 kb on - strand at 2625.774 kb on - strand at 2625.866 kb on + strand at 2625.866 kb on + strand at 2625.867 kb on - strand at 2625.925 kb on + strand at 2625.928 kb on + strand at 2625.928 kb on + strand at 2625.994 kb on - strand at 2625.995 kb on + strand at 2625.995 kb on + strand at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.484 kb on + strand, within EX28DRAFT_2591 at 2626.485 kb on - strand, within EX28DRAFT_2591 at 2626.495 kb on - strand, within EX28DRAFT_2591 at 2626.528 kb on - strand, within EX28DRAFT_2591 at 2626.539 kb on - strand, within EX28DRAFT_2591 at 2626.539 kb on - strand, within EX28DRAFT_2591 at 2626.540 kb on - strand, within EX28DRAFT_2591 at 2626.541 kb on + strand, within EX28DRAFT_2591 at 2626.683 kb on + strand at 2626.683 kb on + strand at 2626.683 kb on + strand at 2626.684 kb on - strand at 2626.684 kb on - strand at 2626.684 kb on - strand at 2626.689 kb on - strand at 2626.689 kb on - strand at 2626.727 kb on - strand at 2626.741 kb on + strand at 2626.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,623,663 - EX28DRAFT_2588 0.78 -1.3 2,623,664 + EX28DRAFT_2588 0.78 +0.1 2,623,665 - EX28DRAFT_2588 0.78 -0.4 2,623,922 + -1.0 2,623,996 + -0.5 2,624,003 - -0.9 2,624,003 - +0.3 2,624,007 - -2.6 2,624,027 + -3.0 2,624,029 + +0.0 2,624,029 + -0.0 2,624,030 - -0.0 2,624,030 - +0.2 2,624,030 - +0.8 2,624,052 - +0.1 2,624,065 - -0.5 2,624,111 - EX28DRAFT_2589 0.12 -0.1 2,624,501 + -0.0 2,624,505 + +0.0 2,624,506 - +1.2 2,624,616 + -0.1 2,624,650 + -0.8 2,624,718 - EX28DRAFT_2590 0.14 +0.5 2,624,718 - EX28DRAFT_2590 0.14 +0.0 2,624,721 + EX28DRAFT_2590 0.14 +0.7 2,624,721 + EX28DRAFT_2590 0.14 -1.0 2,624,721 + EX28DRAFT_2590 0.14 +0.4 2,624,722 - EX28DRAFT_2590 0.14 +0.4 2,624,733 + EX28DRAFT_2590 0.15 +0.5 2,624,733 + EX28DRAFT_2590 0.15 -0.3 2,624,733 + EX28DRAFT_2590 0.15 +0.2 2,624,736 - EX28DRAFT_2590 0.15 +0.2 2,624,746 - EX28DRAFT_2590 0.16 -0.1 2,624,771 + EX28DRAFT_2590 0.18 -0.1 2,625,103 - EX28DRAFT_2590 0.45 -0.6 2,625,184 - EX28DRAFT_2590 0.52 +0.4 2,625,264 + EX28DRAFT_2590 0.59 +0.0 2,625,264 + EX28DRAFT_2590 0.59 +0.4 2,625,264 + EX28DRAFT_2590 0.59 +0.9 2,625,265 - EX28DRAFT_2590 0.59 +0.1 2,625,265 - EX28DRAFT_2590 0.59 +0.5 2,625,265 - EX28DRAFT_2590 0.59 -0.4 2,625,268 + EX28DRAFT_2590 0.59 +0.3 2,625,355 - EX28DRAFT_2590 0.66 +0.5 2,625,671 + +1.0 2,625,672 - +1.8 2,625,774 - +0.5 2,625,866 + +0.8 2,625,866 + -0.5 2,625,867 - +0.5 2,625,925 + +0.7 2,625,928 + +0.6 2,625,928 + +0.4 2,625,994 - +0.0 2,625,995 + +0.3 2,625,995 + +0.8 2,626,482 + EX28DRAFT_2591 0.80 +0.2 2,626,482 + EX28DRAFT_2591 0.80 +0.8 2,626,482 + EX28DRAFT_2591 0.80 -0.6 2,626,482 + EX28DRAFT_2591 0.80 -1.2 2,626,482 + EX28DRAFT_2591 0.80 -0.2 2,626,483 - EX28DRAFT_2591 0.80 -0.2 2,626,483 - EX28DRAFT_2591 0.80 -1.0 2,626,483 - EX28DRAFT_2591 0.80 +0.7 2,626,483 - EX28DRAFT_2591 0.80 +0.0 2,626,484 + EX28DRAFT_2591 0.80 -0.1 2,626,485 - EX28DRAFT_2591 0.81 +0.5 2,626,495 - EX28DRAFT_2591 0.82 +0.0 2,626,528 - EX28DRAFT_2591 0.87 +0.5 2,626,539 - EX28DRAFT_2591 0.88 -0.3 2,626,539 - EX28DRAFT_2591 0.88 -0.1 2,626,540 - EX28DRAFT_2591 0.89 -1.0 2,626,541 + EX28DRAFT_2591 0.89 +1.6 2,626,683 + -0.3 2,626,683 + +0.4 2,626,683 + +0.0 2,626,684 - +0.7 2,626,684 - +0.3 2,626,684 - -1.1 2,626,689 - -0.9 2,626,689 - -0.3 2,626,727 - +0.0 2,626,741 + -0.1 2,626,742 - +0.6
Or see this region's nucleotide sequence