Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2337 and EX28DRAFT_2338 are separated by 67 nucleotides EX28DRAFT_2338 and EX28DRAFT_2339 are separated by 166 nucleotides EX28DRAFT_2339 and EX28DRAFT_2340 overlap by 365 nucleotides EX28DRAFT_2340 and EX28DRAFT_2341 are separated by 190 nucleotides
EX28DRAFT_2337: EX28DRAFT_2337 - Predicted amidohydrolase, at 2,361,456 to 2,362,244
_2337
EX28DRAFT_2338: EX28DRAFT_2338 - protein CrcB, at 2,362,312 to 2,362,695
_2338
EX28DRAFT_2339: EX28DRAFT_2339 - RNA, at 2,362,862 to 2,363,279
_2339
EX28DRAFT_2340: EX28DRAFT_2340 - Cold shock proteins, at 2,362,915 to 2,363,124
_2340
EX28DRAFT_2341: EX28DRAFT_2341 - Antimicrobial peptide resistance and lipid A acylation protein PagP, at 2,363,315 to 2,363,932
_2341
Position (kb)
2362
2363
2364 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2361.990 kb on + strand, within EX28DRAFT_2337 at 2361.991 kb on - strand, within EX28DRAFT_2337 at 2361.991 kb on - strand, within EX28DRAFT_2337 at 2361.992 kb on + strand, within EX28DRAFT_2337 at 2361.992 kb on + strand, within EX28DRAFT_2337 at 2361.993 kb on - strand, within EX28DRAFT_2337 at 2362.003 kb on - strand, within EX28DRAFT_2337 at 2362.020 kb on - strand, within EX28DRAFT_2337 at 2362.020 kb on - strand, within EX28DRAFT_2337 at 2362.104 kb on - strand, within EX28DRAFT_2337 at 2362.236 kb on + strand at 2362.236 kb on + strand at 2362.236 kb on + strand at 2362.237 kb on - strand at 2362.240 kb on + strand at 2362.240 kb on + strand at 2362.240 kb on + strand at 2362.240 kb on + strand at 2362.240 kb on + strand at 2362.241 kb on - strand at 2362.241 kb on - strand at 2362.241 kb on - strand at 2362.241 kb on - strand at 2362.241 kb on - strand at 2362.241 kb on - strand at 2362.244 kb on + strand at 2362.244 kb on + strand at 2362.244 kb on + strand at 2362.244 kb on + strand at 2362.244 kb on + strand at 2362.244 kb on + strand at 2362.244 kb on + strand at 2362.244 kb on + strand at 2362.245 kb on - strand at 2362.245 kb on - strand at 2362.245 kb on - strand at 2362.245 kb on - strand at 2362.245 kb on - strand at 2362.245 kb on - strand at 2362.245 kb on - strand at 2362.286 kb on + strand at 2362.286 kb on + strand at 2362.287 kb on - strand at 2362.287 kb on - strand at 2362.304 kb on + strand at 2362.305 kb on - strand at 2362.317 kb on - strand at 2362.317 kb on - strand at 2362.322 kb on + strand at 2362.339 kb on - strand at 2362.380 kb on + strand, within EX28DRAFT_2338 at 2362.414 kb on - strand, within EX28DRAFT_2338 at 2362.617 kb on + strand, within EX28DRAFT_2338 at 2362.629 kb on + strand, within EX28DRAFT_2338 at 2362.629 kb on + strand, within EX28DRAFT_2338 at 2362.629 kb on + strand, within EX28DRAFT_2338 at 2362.839 kb on + strand at 2362.839 kb on + strand at 2363.118 kb on + strand at 2363.138 kb on - strand at 2363.138 kb on - strand at 2363.176 kb on + strand at 2363.265 kb on + strand at 2363.289 kb on - strand at 2363.302 kb on - strand at 2363.343 kb on + strand at 2363.362 kb on - strand at 2363.362 kb on - strand at 2363.362 kb on - strand at 2363.362 kb on - strand at 2363.377 kb on - strand, within EX28DRAFT_2341 at 2363.377 kb on - strand, within EX28DRAFT_2341 at 2363.377 kb on - strand, within EX28DRAFT_2341 at 2363.377 kb on - strand, within EX28DRAFT_2341 at 2363.445 kb on + strand, within EX28DRAFT_2341 at 2363.541 kb on + strand, within EX28DRAFT_2341 at 2363.566 kb on + strand, within EX28DRAFT_2341 at 2363.592 kb on + strand, within EX28DRAFT_2341 at 2363.593 kb on - strand, within EX28DRAFT_2341 at 2363.593 kb on - strand, within EX28DRAFT_2341 at 2363.665 kb on - strand, within EX28DRAFT_2341 at 2363.665 kb on - strand, within EX28DRAFT_2341 at 2363.665 kb on - strand, within EX28DRAFT_2341 at 2363.712 kb on - strand, within EX28DRAFT_2341 at 2363.724 kb on + strand, within EX28DRAFT_2341 at 2363.724 kb on + strand, within EX28DRAFT_2341 at 2363.724 kb on + strand, within EX28DRAFT_2341 at 2363.733 kb on + strand, within EX28DRAFT_2341 at 2363.838 kb on - strand, within EX28DRAFT_2341 at 2363.878 kb on + strand at 2363.908 kb on + strand at 2363.937 kb on + strand at 2363.938 kb on - strand at 2363.978 kb on + strand at 2364.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,361,990 + EX28DRAFT_2337 0.68 -1.0 2,361,991 - EX28DRAFT_2337 0.68 -0.4 2,361,991 - EX28DRAFT_2337 0.68 +1.0 2,361,992 + EX28DRAFT_2337 0.68 +0.1 2,361,992 + EX28DRAFT_2337 0.68 +0.0 2,361,993 - EX28DRAFT_2337 0.68 -0.1 2,362,003 - EX28DRAFT_2337 0.69 -0.5 2,362,020 - EX28DRAFT_2337 0.71 -0.5 2,362,020 - EX28DRAFT_2337 0.71 -1.6 2,362,104 - EX28DRAFT_2337 0.82 +0.2 2,362,236 + -0.8 2,362,236 + -1.0 2,362,236 + -0.0 2,362,237 - -0.1 2,362,240 + +0.3 2,362,240 + +0.5 2,362,240 + -0.0 2,362,240 + -0.4 2,362,240 + +0.8 2,362,241 - +0.4 2,362,241 - +0.7 2,362,241 - -0.6 2,362,241 - +0.3 2,362,241 - -0.9 2,362,241 - +0.4 2,362,244 + -0.5 2,362,244 + +0.1 2,362,244 + -1.3 2,362,244 + -0.6 2,362,244 + +0.1 2,362,244 + -0.4 2,362,244 + +0.3 2,362,244 + -0.6 2,362,245 - -0.2 2,362,245 - -1.3 2,362,245 - -0.3 2,362,245 - -0.5 2,362,245 - +0.6 2,362,245 - -0.1 2,362,245 - -0.1 2,362,286 + -0.1 2,362,286 + +1.1 2,362,287 - -0.1 2,362,287 - +0.0 2,362,304 + +0.1 2,362,305 - +0.0 2,362,317 - -1.0 2,362,317 - +0.6 2,362,322 + -0.8 2,362,339 - -0.8 2,362,380 + EX28DRAFT_2338 0.18 +0.2 2,362,414 - EX28DRAFT_2338 0.27 +0.8 2,362,617 + EX28DRAFT_2338 0.79 +1.0 2,362,629 + EX28DRAFT_2338 0.83 +0.1 2,362,629 + EX28DRAFT_2338 0.83 +0.5 2,362,629 + EX28DRAFT_2338 0.83 +0.1 2,362,839 + -0.0 2,362,839 + -1.7 2,363,118 + -0.7 2,363,138 - +0.1 2,363,138 - +0.3 2,363,176 + -0.3 2,363,265 + +0.7 2,363,289 - +0.3 2,363,302 - -0.5 2,363,343 + +0.1 2,363,362 - -0.0 2,363,362 - +1.8 2,363,362 - -2.6 2,363,362 - +1.0 2,363,377 - EX28DRAFT_2341 0.10 -0.2 2,363,377 - EX28DRAFT_2341 0.10 +0.1 2,363,377 - EX28DRAFT_2341 0.10 -0.1 2,363,377 - EX28DRAFT_2341 0.10 +0.1 2,363,445 + EX28DRAFT_2341 0.21 +0.6 2,363,541 + EX28DRAFT_2341 0.37 +0.7 2,363,566 + EX28DRAFT_2341 0.41 -0.3 2,363,592 + EX28DRAFT_2341 0.45 +0.0 2,363,593 - EX28DRAFT_2341 0.45 -0.2 2,363,593 - EX28DRAFT_2341 0.45 -0.7 2,363,665 - EX28DRAFT_2341 0.57 +1.1 2,363,665 - EX28DRAFT_2341 0.57 -0.1 2,363,665 - EX28DRAFT_2341 0.57 +0.5 2,363,712 - EX28DRAFT_2341 0.64 -0.3 2,363,724 + EX28DRAFT_2341 0.66 -0.1 2,363,724 + EX28DRAFT_2341 0.66 +0.2 2,363,724 + EX28DRAFT_2341 0.66 +0.5 2,363,733 + EX28DRAFT_2341 0.68 -0.2 2,363,838 - EX28DRAFT_2341 0.85 -0.8 2,363,878 + -0.7 2,363,908 + -0.1 2,363,937 + -0.4 2,363,938 - -0.0 2,363,978 + +1.3 2,364,057 - -1.3
Or see this region's nucleotide sequence