Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2283

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2281 and EX28DRAFT_2282 are separated by 12 nucleotidesEX28DRAFT_2282 and EX28DRAFT_2283 are separated by 0 nucleotidesEX28DRAFT_2283 and EX28DRAFT_2284 overlap by 4 nucleotides EX28DRAFT_2281: EX28DRAFT_2281 - K+-transporting ATPase, B subunit, at 2,305,014 to 2,307,062 _2281 EX28DRAFT_2282: EX28DRAFT_2282 - K+-transporting ATPase, C subunit, at 2,307,075 to 2,307,650 _2282 EX28DRAFT_2283: EX28DRAFT_2283 - Osmosensitive K+ channel histidine kinase, at 2,307,651 to 2,310,338 _2283 EX28DRAFT_2284: EX28DRAFT_2284 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 2,310,335 to 2,311,012 _2284 Position (kb) 2307 2308 2309 2310 2311Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2306.672 kb on + strand, within EX28DRAFT_2281at 2306.772 kb on + strand, within EX28DRAFT_2281at 2306.875 kb on + strandat 2306.895 kb on - strandat 2306.934 kb on + strandat 2306.934 kb on + strandat 2306.935 kb on - strandat 2306.935 kb on - strandat 2306.936 kb on + strandat 2306.936 kb on + strandat 2306.982 kb on + strandat 2307.060 kb on + strandat 2307.096 kb on - strandat 2307.097 kb on + strandat 2307.098 kb on - strandat 2307.304 kb on - strand, within EX28DRAFT_2282at 2307.648 kb on + strandat 2307.649 kb on - strandat 2307.812 kb on + strandat 2307.813 kb on - strandat 2307.814 kb on + strandat 2307.830 kb on - strandat 2308.033 kb on + strand, within EX28DRAFT_2283at 2308.033 kb on + strand, within EX28DRAFT_2283at 2308.033 kb on + strand, within EX28DRAFT_2283at 2308.034 kb on - strand, within EX28DRAFT_2283at 2308.042 kb on + strand, within EX28DRAFT_2283at 2308.239 kb on + strand, within EX28DRAFT_2283at 2308.240 kb on - strand, within EX28DRAFT_2283at 2308.394 kb on + strand, within EX28DRAFT_2283at 2308.476 kb on - strand, within EX28DRAFT_2283at 2308.504 kb on - strand, within EX28DRAFT_2283at 2308.504 kb on - strand, within EX28DRAFT_2283at 2308.626 kb on - strand, within EX28DRAFT_2283at 2308.886 kb on + strand, within EX28DRAFT_2283at 2308.958 kb on - strand, within EX28DRAFT_2283at 2309.040 kb on - strand, within EX28DRAFT_2283at 2309.074 kb on + strand, within EX28DRAFT_2283at 2309.074 kb on + strand, within EX28DRAFT_2283at 2309.075 kb on - strand, within EX28DRAFT_2283at 2309.079 kb on + strand, within EX28DRAFT_2283at 2309.080 kb on - strand, within EX28DRAFT_2283at 2309.080 kb on - strand, within EX28DRAFT_2283at 2309.080 kb on - strand, within EX28DRAFT_2283at 2309.120 kb on - strand, within EX28DRAFT_2283at 2309.196 kb on + strand, within EX28DRAFT_2283at 2309.196 kb on + strand, within EX28DRAFT_2283at 2309.265 kb on - strand, within EX28DRAFT_2283at 2309.790 kb on - strand, within EX28DRAFT_2283at 2309.819 kb on + strand, within EX28DRAFT_2283at 2309.931 kb on - strand, within EX28DRAFT_2283at 2309.962 kb on + strand, within EX28DRAFT_2283at 2310.028 kb on - strand, within EX28DRAFT_2283at 2310.028 kb on - strand, within EX28DRAFT_2283at 2310.137 kb on + strandat 2310.322 kb on + strandat 2310.322 kb on + strandat 2310.373 kb on + strandat 2310.448 kb on - strand, within EX28DRAFT_2284at 2310.450 kb on + strand, within EX28DRAFT_2284at 2310.450 kb on + strand, within EX28DRAFT_2284at 2310.450 kb on + strand, within EX28DRAFT_2284at 2310.451 kb on - strand, within EX28DRAFT_2284at 2310.864 kb on + strand, within EX28DRAFT_2284at 2310.865 kb on - strand, within EX28DRAFT_2284at 2310.915 kb on + strand, within EX28DRAFT_2284at 2310.916 kb on - strand, within EX28DRAFT_2284at 2310.916 kb on - strand, within EX28DRAFT_2284at 2310.918 kb on - strand, within EX28DRAFT_2284at 2310.918 kb on - strand, within EX28DRAFT_2284at 2310.919 kb on + strand, within EX28DRAFT_2284at 2310.919 kb on + strand, within EX28DRAFT_2284at 2310.919 kb on + strand, within EX28DRAFT_2284at 2310.919 kb on + strand, within EX28DRAFT_2284at 2310.972 kb on + strandat 2311.119 kb on - strandat 2311.321 kb on + strandat 2311.322 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,306,672 + EX28DRAFT_2281 0.81 +1.0
2,306,772 + EX28DRAFT_2281 0.86 +0.2
2,306,875 + -0.8
2,306,895 - -0.2
2,306,934 + +0.0
2,306,934 + -0.5
2,306,935 - -2.4
2,306,935 - +0.8
2,306,936 + +0.5
2,306,936 + +0.9
2,306,982 + +0.5
2,307,060 + -0.5
2,307,096 - +1.1
2,307,097 + +1.2
2,307,098 - +0.2
2,307,304 - EX28DRAFT_2282 0.40 -0.1
2,307,648 + -0.0
2,307,649 - -0.6
2,307,812 + +0.1
2,307,813 - +0.2
2,307,814 + +0.5
2,307,830 - +0.9
2,308,033 + EX28DRAFT_2283 0.14 -0.1
2,308,033 + EX28DRAFT_2283 0.14 +1.8
2,308,033 + EX28DRAFT_2283 0.14 +1.0
2,308,034 - EX28DRAFT_2283 0.14 -0.3
2,308,042 + EX28DRAFT_2283 0.15 -0.1
2,308,239 + EX28DRAFT_2283 0.22 -0.6
2,308,240 - EX28DRAFT_2283 0.22 +0.8
2,308,394 + EX28DRAFT_2283 0.28 +0.2
2,308,476 - EX28DRAFT_2283 0.31 +0.6
2,308,504 - EX28DRAFT_2283 0.32 -0.6
2,308,504 - EX28DRAFT_2283 0.32 -0.1
2,308,626 - EX28DRAFT_2283 0.36 -0.1
2,308,886 + EX28DRAFT_2283 0.46 -0.2
2,308,958 - EX28DRAFT_2283 0.49 +0.4
2,309,040 - EX28DRAFT_2283 0.52 +0.6
2,309,074 + EX28DRAFT_2283 0.53 +0.2
2,309,074 + EX28DRAFT_2283 0.53 -0.6
2,309,075 - EX28DRAFT_2283 0.53 -2.0
2,309,079 + EX28DRAFT_2283 0.53 +0.5
2,309,080 - EX28DRAFT_2283 0.53 +0.6
2,309,080 - EX28DRAFT_2283 0.53 +0.1
2,309,080 - EX28DRAFT_2283 0.53 +0.1
2,309,120 - EX28DRAFT_2283 0.55 -1.3
2,309,196 + EX28DRAFT_2283 0.57 +1.9
2,309,196 + EX28DRAFT_2283 0.57 +0.1
2,309,265 - EX28DRAFT_2283 0.60 +0.5
2,309,790 - EX28DRAFT_2283 0.80 -0.3
2,309,819 + EX28DRAFT_2283 0.81 +1.1
2,309,931 - EX28DRAFT_2283 0.85 +0.2
2,309,962 + EX28DRAFT_2283 0.86 -0.2
2,310,028 - EX28DRAFT_2283 0.88 -1.8
2,310,028 - EX28DRAFT_2283 0.88 +0.5
2,310,137 + +0.9
2,310,322 + +2.0
2,310,322 + +0.8
2,310,373 + -0.4
2,310,448 - EX28DRAFT_2284 0.17 +0.4
2,310,450 + EX28DRAFT_2284 0.17 +0.3
2,310,450 + EX28DRAFT_2284 0.17 +0.0
2,310,450 + EX28DRAFT_2284 0.17 +0.7
2,310,451 - EX28DRAFT_2284 0.17 +0.5
2,310,864 + EX28DRAFT_2284 0.78 -2.9
2,310,865 - EX28DRAFT_2284 0.78 -0.1
2,310,915 + EX28DRAFT_2284 0.86 +2.8
2,310,916 - EX28DRAFT_2284 0.86 +0.1
2,310,916 - EX28DRAFT_2284 0.86 +0.5
2,310,918 - EX28DRAFT_2284 0.86 +0.4
2,310,918 - EX28DRAFT_2284 0.86 +0.1
2,310,919 + EX28DRAFT_2284 0.86 -0.0
2,310,919 + EX28DRAFT_2284 0.86 +0.3
2,310,919 + EX28DRAFT_2284 0.86 +2.1
2,310,919 + EX28DRAFT_2284 0.86 +0.3
2,310,972 + -0.2
2,311,119 - +0.6
2,311,321 + +0.7
2,311,322 - +0.5

Or see this region's nucleotide sequence