Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1711 and EX28DRAFT_1712 are separated by 10 nucleotides EX28DRAFT_1712 and EX28DRAFT_1713 are separated by 40 nucleotides EX28DRAFT_1713 and EX28DRAFT_1714 are separated by 61 nucleotides
EX28DRAFT_1711: EX28DRAFT_1711 - H+/gluconate symporter and related permeases, at 1,727,251 to 1,728,642
_1711
EX28DRAFT_1712: EX28DRAFT_1712 - 3-hydroxybutyrate dehydrogenase, at 1,728,653 to 1,729,423
_1712
EX28DRAFT_1713: EX28DRAFT_1713 - Uncharacterized conserved protein, at 1,729,464 to 1,730,906
_1713
EX28DRAFT_1714: EX28DRAFT_1714 - FOG: EAL domain, at 1,730,968 to 1,731,684
_1714
Position (kb)
1729
1730
1731 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1728.489 kb on + strand, within EX28DRAFT_1711 at 1728.585 kb on + strand at 1728.724 kb on - strand at 1728.921 kb on + strand, within EX28DRAFT_1712 at 1729.128 kb on + strand, within EX28DRAFT_1712 at 1729.129 kb on - strand, within EX28DRAFT_1712 at 1729.519 kb on + strand at 1729.519 kb on + strand at 1729.520 kb on - strand at 1729.572 kb on + strand at 1729.582 kb on + strand at 1729.715 kb on - strand, within EX28DRAFT_1713 at 1729.781 kb on + strand, within EX28DRAFT_1713 at 1729.782 kb on - strand, within EX28DRAFT_1713 at 1729.782 kb on - strand, within EX28DRAFT_1713 at 1729.820 kb on + strand, within EX28DRAFT_1713 at 1729.821 kb on - strand, within EX28DRAFT_1713 at 1729.928 kb on - strand, within EX28DRAFT_1713 at 1729.941 kb on + strand, within EX28DRAFT_1713 at 1729.942 kb on - strand, within EX28DRAFT_1713 at 1729.942 kb on - strand, within EX28DRAFT_1713 at 1729.942 kb on - strand, within EX28DRAFT_1713 at 1729.942 kb on - strand, within EX28DRAFT_1713 at 1729.942 kb on - strand, within EX28DRAFT_1713 at 1729.951 kb on + strand, within EX28DRAFT_1713 at 1729.951 kb on + strand, within EX28DRAFT_1713 at 1729.980 kb on + strand, within EX28DRAFT_1713 at 1729.980 kb on + strand, within EX28DRAFT_1713 at 1729.980 kb on + strand, within EX28DRAFT_1713 at 1729.981 kb on - strand, within EX28DRAFT_1713 at 1729.981 kb on - strand, within EX28DRAFT_1713 at 1729.981 kb on - strand, within EX28DRAFT_1713 at 1730.059 kb on + strand, within EX28DRAFT_1713 at 1730.090 kb on + strand, within EX28DRAFT_1713 at 1730.090 kb on + strand, within EX28DRAFT_1713 at 1730.090 kb on + strand, within EX28DRAFT_1713 at 1730.092 kb on + strand, within EX28DRAFT_1713 at 1730.093 kb on - strand, within EX28DRAFT_1713 at 1730.093 kb on - strand, within EX28DRAFT_1713 at 1730.257 kb on + strand, within EX28DRAFT_1713 at 1730.257 kb on + strand, within EX28DRAFT_1713 at 1730.257 kb on + strand, within EX28DRAFT_1713 at 1730.261 kb on + strand, within EX28DRAFT_1713 at 1730.390 kb on + strand, within EX28DRAFT_1713 at 1730.390 kb on + strand, within EX28DRAFT_1713 at 1730.390 kb on + strand, within EX28DRAFT_1713 at 1730.690 kb on - strand, within EX28DRAFT_1713 at 1730.690 kb on - strand, within EX28DRAFT_1713 at 1730.817 kb on - strand at 1730.832 kb on + strand at 1730.833 kb on - strand at 1730.833 kb on - strand at 1730.891 kb on + strand at 1730.891 kb on + strand at 1730.891 kb on + strand at 1730.906 kb on + strand at 1730.906 kb on + strand at 1730.922 kb on + strand at 1730.922 kb on + strand at 1730.927 kb on + strand at 1730.927 kb on + strand at 1730.991 kb on + strand at 1730.992 kb on - strand at 1730.992 kb on - strand at 1731.840 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,728,489 + EX28DRAFT_1711 0.89 +0.8 1,728,585 + -1.1 1,728,724 - -2.7 1,728,921 + EX28DRAFT_1712 0.35 -0.3 1,729,128 + EX28DRAFT_1712 0.62 -0.1 1,729,129 - EX28DRAFT_1712 0.62 +0.4 1,729,519 + +0.4 1,729,519 + -0.1 1,729,520 - -1.7 1,729,572 + -0.4 1,729,582 + +0.3 1,729,715 - EX28DRAFT_1713 0.17 -0.8 1,729,781 + EX28DRAFT_1713 0.22 -0.8 1,729,782 - EX28DRAFT_1713 0.22 -0.6 1,729,782 - EX28DRAFT_1713 0.22 -0.8 1,729,820 + EX28DRAFT_1713 0.25 +0.4 1,729,821 - EX28DRAFT_1713 0.25 -0.5 1,729,928 - EX28DRAFT_1713 0.32 -0.8 1,729,941 + EX28DRAFT_1713 0.33 +0.1 1,729,942 - EX28DRAFT_1713 0.33 +0.0 1,729,942 - EX28DRAFT_1713 0.33 -0.6 1,729,942 - EX28DRAFT_1713 0.33 -2.4 1,729,942 - EX28DRAFT_1713 0.33 -0.6 1,729,942 - EX28DRAFT_1713 0.33 +0.6 1,729,951 + EX28DRAFT_1713 0.34 -0.6 1,729,951 + EX28DRAFT_1713 0.34 +0.6 1,729,980 + EX28DRAFT_1713 0.36 +0.5 1,729,980 + EX28DRAFT_1713 0.36 +1.0 1,729,980 + EX28DRAFT_1713 0.36 +0.6 1,729,981 - EX28DRAFT_1713 0.36 +0.3 1,729,981 - EX28DRAFT_1713 0.36 +0.5 1,729,981 - EX28DRAFT_1713 0.36 +0.6 1,730,059 + EX28DRAFT_1713 0.41 +0.8 1,730,090 + EX28DRAFT_1713 0.43 +0.5 1,730,090 + EX28DRAFT_1713 0.43 -0.4 1,730,090 + EX28DRAFT_1713 0.43 +3.5 1,730,092 + EX28DRAFT_1713 0.44 -0.1 1,730,093 - EX28DRAFT_1713 0.44 +0.2 1,730,093 - EX28DRAFT_1713 0.44 -1.4 1,730,257 + EX28DRAFT_1713 0.55 -0.3 1,730,257 + EX28DRAFT_1713 0.55 -0.2 1,730,257 + EX28DRAFT_1713 0.55 -1.5 1,730,261 + EX28DRAFT_1713 0.55 -0.4 1,730,390 + EX28DRAFT_1713 0.64 -0.9 1,730,390 + EX28DRAFT_1713 0.64 -0.1 1,730,390 + EX28DRAFT_1713 0.64 -0.0 1,730,690 - EX28DRAFT_1713 0.85 +0.7 1,730,690 - EX28DRAFT_1713 0.85 -0.0 1,730,817 - -1.4 1,730,832 + +1.2 1,730,833 - -0.0 1,730,833 - -0.3 1,730,891 + +0.7 1,730,891 + -0.1 1,730,891 + -0.4 1,730,906 + +0.0 1,730,906 + +0.6 1,730,922 + -1.0 1,730,922 + -1.0 1,730,927 + +0.0 1,730,927 + -0.4 1,730,991 + -0.0 1,730,992 - +0.0 1,730,992 - -2.7 1,731,840 + +0.1
Or see this region's nucleotide sequence