Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0147

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0146 and EX28DRAFT_0147 are separated by 292 nucleotidesEX28DRAFT_0147 and EX28DRAFT_0148 are separated by 11 nucleotides EX28DRAFT_0146: EX28DRAFT_0146 - transcriptional regulator, RpiR family, at 89,976 to 90,809 _0146 EX28DRAFT_0147: EX28DRAFT_0147 - methylmalonic acid semialdehyde dehydrogenase, at 91,102 to 92,607 _0147 EX28DRAFT_0148: EX28DRAFT_0148 - Acetolactate synthase, at 92,619 to 94,544 _0148 Position (kb) 91 92 93Strain fitness (log2 ratio) -1 0 1at 90.320 kb on - strand, within EX28DRAFT_0146at 90.329 kb on - strand, within EX28DRAFT_0146at 90.341 kb on + strand, within EX28DRAFT_0146at 90.367 kb on + strand, within EX28DRAFT_0146at 90.367 kb on + strand, within EX28DRAFT_0146at 90.367 kb on + strand, within EX28DRAFT_0146at 90.368 kb on - strand, within EX28DRAFT_0146at 90.547 kb on + strand, within EX28DRAFT_0146at 90.832 kb on - strandat 91.054 kb on + strandat 91.080 kb on + strandat 91.080 kb on + strandat 91.215 kb on + strandat 91.215 kb on + strandat 91.802 kb on - strand, within EX28DRAFT_0147at 91.977 kb on + strand, within EX28DRAFT_0147at 92.113 kb on + strand, within EX28DRAFT_0147at 92.195 kb on - strand, within EX28DRAFT_0147at 92.195 kb on - strand, within EX28DRAFT_0147at 92.245 kb on + strand, within EX28DRAFT_0147at 92.245 kb on + strand, within EX28DRAFT_0147at 92.246 kb on - strand, within EX28DRAFT_0147at 92.246 kb on - strand, within EX28DRAFT_0147at 92.332 kb on + strand, within EX28DRAFT_0147at 92.332 kb on + strand, within EX28DRAFT_0147at 92.332 kb on + strand, within EX28DRAFT_0147at 92.333 kb on - strand, within EX28DRAFT_0147at 92.618 kb on + strandat 92.633 kb on + strandat 92.634 kb on - strandat 92.676 kb on + strandat 92.677 kb on - strandat 92.828 kb on + strand, within EX28DRAFT_0148at 92.910 kb on - strand, within EX28DRAFT_0148at 92.976 kb on + strand, within EX28DRAFT_0148at 92.977 kb on - strand, within EX28DRAFT_0148at 93.022 kb on - strand, within EX28DRAFT_0148at 93.022 kb on - strand, within EX28DRAFT_0148at 93.137 kb on + strand, within EX28DRAFT_0148at 93.138 kb on - strand, within EX28DRAFT_0148at 93.430 kb on + strand, within EX28DRAFT_0148at 93.430 kb on + strand, within EX28DRAFT_0148at 93.447 kb on - strand, within EX28DRAFT_0148at 93.545 kb on + strand, within EX28DRAFT_0148at 93.546 kb on - strand, within EX28DRAFT_0148

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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90,320 - EX28DRAFT_0146 0.41 +1.0
90,329 - EX28DRAFT_0146 0.42 +0.5
90,341 + EX28DRAFT_0146 0.44 -1.1
90,367 + EX28DRAFT_0146 0.47 -1.2
90,367 + EX28DRAFT_0146 0.47 -0.3
90,367 + EX28DRAFT_0146 0.47 +0.2
90,368 - EX28DRAFT_0146 0.47 -0.4
90,547 + EX28DRAFT_0146 0.68 +0.4
90,832 - -0.7
91,054 + -0.6
91,080 + -1.4
91,080 + +0.7
91,215 + -0.6
91,215 + +0.2
91,802 - EX28DRAFT_0147 0.46 -0.0
91,977 + EX28DRAFT_0147 0.58 -0.0
92,113 + EX28DRAFT_0147 0.67 -1.0
92,195 - EX28DRAFT_0147 0.73 +0.1
92,195 - EX28DRAFT_0147 0.73 -0.5
92,245 + EX28DRAFT_0147 0.76 -0.7
92,245 + EX28DRAFT_0147 0.76 -0.0
92,246 - EX28DRAFT_0147 0.76 +0.7
92,246 - EX28DRAFT_0147 0.76 -0.7
92,332 + EX28DRAFT_0147 0.82 -0.0
92,332 + EX28DRAFT_0147 0.82 -0.3
92,332 + EX28DRAFT_0147 0.82 -0.5
92,333 - EX28DRAFT_0147 0.82 -0.1
92,618 + -0.6
92,633 + +0.3
92,634 - +1.3
92,676 + -1.5
92,677 - -0.3
92,828 + EX28DRAFT_0148 0.11 +0.6
92,910 - EX28DRAFT_0148 0.15 +0.8
92,976 + EX28DRAFT_0148 0.19 +0.5
92,977 - EX28DRAFT_0148 0.19 +0.1
93,022 - EX28DRAFT_0148 0.21 -0.1
93,022 - EX28DRAFT_0148 0.21 -0.3
93,137 + EX28DRAFT_0148 0.27 +0.4
93,138 - EX28DRAFT_0148 0.27 -1.7
93,430 + EX28DRAFT_0148 0.42 +0.3
93,430 + EX28DRAFT_0148 0.42 +0.1
93,447 - EX28DRAFT_0148 0.43 -0.2
93,545 + EX28DRAFT_0148 0.48 +0.9
93,546 - EX28DRAFT_0148 0.48 +0.1

Or see this region's nucleotide sequence