Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20465 and ABIE41_RS20470 are separated by 296 nucleotides ABIE41_RS20470 and ABIE41_RS20475 are separated by 76 nucleotides
ABIE41_RS20465: ABIE41_RS20465 - phosphotransferase, at 4,206,273 to 4,207,301
_RS20465
ABIE41_RS20470: ABIE41_RS20470 - MFS transporter, at 4,207,598 to 4,208,944
_RS20470
ABIE41_RS20475: ABIE41_RS20475 - ROK family protein, at 4,209,021 to 4,210,241
_RS20475
Position (kb) 4207
4208
4209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4207.198 kb on + strand, within ABIE41_RS20465 at 4207.198 kb on + strand, within ABIE41_RS20465 at 4207.198 kb on + strand, within ABIE41_RS20465 at 4207.198 kb on + strand, within ABIE41_RS20465 at 4207.198 kb on + strand, within ABIE41_RS20465 at 4207.199 kb on - strand at 4207.199 kb on - strand at 4207.199 kb on - strand at 4207.199 kb on - strand at 4207.282 kb on + strand at 4207.282 kb on + strand at 4207.476 kb on + strand at 4207.626 kb on - strand at 4207.626 kb on - strand at 4207.667 kb on - strand at 4207.769 kb on + strand, within ABIE41_RS20470 at 4207.769 kb on + strand, within ABIE41_RS20470 at 4207.770 kb on - strand, within ABIE41_RS20470 at 4207.770 kb on - strand, within ABIE41_RS20470 at 4207.770 kb on - strand, within ABIE41_RS20470 at 4207.770 kb on - strand, within ABIE41_RS20470 at 4207.901 kb on + strand, within ABIE41_RS20470 at 4207.901 kb on + strand, within ABIE41_RS20470 at 4207.901 kb on + strand, within ABIE41_RS20470 at 4207.901 kb on + strand, within ABIE41_RS20470 at 4207.901 kb on + strand, within ABIE41_RS20470 at 4207.901 kb on + strand, within ABIE41_RS20470 at 4207.902 kb on - strand, within ABIE41_RS20470 at 4207.902 kb on - strand, within ABIE41_RS20470 at 4207.902 kb on - strand, within ABIE41_RS20470 at 4207.902 kb on - strand, within ABIE41_RS20470 at 4207.994 kb on + strand, within ABIE41_RS20470 at 4207.996 kb on + strand, within ABIE41_RS20470 at 4207.996 kb on + strand, within ABIE41_RS20470 at 4207.996 kb on + strand, within ABIE41_RS20470 at 4207.996 kb on + strand, within ABIE41_RS20470 at 4207.997 kb on - strand, within ABIE41_RS20470 at 4207.997 kb on - strand, within ABIE41_RS20470 at 4207.997 kb on - strand, within ABIE41_RS20470 at 4208.028 kb on - strand, within ABIE41_RS20470 at 4208.087 kb on + strand, within ABIE41_RS20470 at 4208.087 kb on + strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.195 kb on + strand, within ABIE41_RS20470 at 4208.225 kb on + strand, within ABIE41_RS20470 at 4208.226 kb on - strand, within ABIE41_RS20470 at 4208.305 kb on + strand, within ABIE41_RS20470 at 4208.418 kb on + strand, within ABIE41_RS20470 at 4208.419 kb on - strand, within ABIE41_RS20470 at 4208.576 kb on + strand, within ABIE41_RS20470 at 4208.577 kb on - strand, within ABIE41_RS20470 at 4208.577 kb on - strand, within ABIE41_RS20470 at 4208.693 kb on + strand, within ABIE41_RS20470 at 4208.693 kb on + strand, within ABIE41_RS20470 at 4208.694 kb on - strand, within ABIE41_RS20470 at 4208.964 kb on + strand at 4208.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 4,207,198 + ABIE41_RS20465 0.90 +0.5 4,207,198 + ABIE41_RS20465 0.90 +0.1 4,207,198 + ABIE41_RS20465 0.90 -0.7 4,207,198 + ABIE41_RS20465 0.90 +1.2 4,207,198 + ABIE41_RS20465 0.90 +0.9 4,207,199 - -2.1 4,207,199 - +0.3 4,207,199 - -2.9 4,207,199 - -1.3 4,207,282 + -0.7 4,207,282 + +0.1 4,207,476 + -0.2 4,207,626 - -0.9 4,207,626 - -0.8 4,207,667 - +0.1 4,207,769 + ABIE41_RS20470 0.13 +0.2 4,207,769 + ABIE41_RS20470 0.13 -0.5 4,207,770 - ABIE41_RS20470 0.13 +0.6 4,207,770 - ABIE41_RS20470 0.13 -0.5 4,207,770 - ABIE41_RS20470 0.13 -0.9 4,207,770 - ABIE41_RS20470 0.13 +0.1 4,207,901 + ABIE41_RS20470 0.22 -0.2 4,207,901 + ABIE41_RS20470 0.22 -0.6 4,207,901 + ABIE41_RS20470 0.22 -0.1 4,207,901 + ABIE41_RS20470 0.22 -0.1 4,207,901 + ABIE41_RS20470 0.22 +4.2 4,207,901 + ABIE41_RS20470 0.22 +1.1 4,207,902 - ABIE41_RS20470 0.23 -3.3 4,207,902 - ABIE41_RS20470 0.23 +2.1 4,207,902 - ABIE41_RS20470 0.23 +0.7 4,207,902 - ABIE41_RS20470 0.23 +1.0 4,207,994 + ABIE41_RS20470 0.29 +2.2 4,207,996 + ABIE41_RS20470 0.30 +0.3 4,207,996 + ABIE41_RS20470 0.30 -1.4 4,207,996 + ABIE41_RS20470 0.30 -1.1 4,207,996 + ABIE41_RS20470 0.30 +0.2 4,207,997 - ABIE41_RS20470 0.30 -2.9 4,207,997 - ABIE41_RS20470 0.30 -1.1 4,207,997 - ABIE41_RS20470 0.30 +0.2 4,208,028 - ABIE41_RS20470 0.32 -0.2 4,208,087 + ABIE41_RS20470 0.36 +0.3 4,208,087 + ABIE41_RS20470 0.36 -1.7 4,208,088 - ABIE41_RS20470 0.36 +0.8 4,208,088 - ABIE41_RS20470 0.36 -0.1 4,208,088 - ABIE41_RS20470 0.36 -1.5 4,208,088 - ABIE41_RS20470 0.36 +0.7 4,208,088 - ABIE41_RS20470 0.36 +0.7 4,208,195 + ABIE41_RS20470 0.44 -0.1 4,208,225 + ABIE41_RS20470 0.47 +0.1 4,208,226 - ABIE41_RS20470 0.47 +0.1 4,208,305 + ABIE41_RS20470 0.52 +1.3 4,208,418 + ABIE41_RS20470 0.61 +2.5 4,208,419 - ABIE41_RS20470 0.61 +0.6 4,208,576 + ABIE41_RS20470 0.73 +1.6 4,208,577 - ABIE41_RS20470 0.73 -0.3 4,208,577 - ABIE41_RS20470 0.73 -2.0 4,208,693 + ABIE41_RS20470 0.81 -0.3 4,208,693 + ABIE41_RS20470 0.81 +0.6 4,208,694 - ABIE41_RS20470 0.81 -0.0 4,208,964 + +0.1 4,208,965 - -1.7
Or see this region's nucleotide sequence