Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09030

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS09025 and ABIE41_RS09030 are separated by 116 nucleotidesABIE41_RS09030 and ABIE41_RS09035 are separated by 28 nucleotidesABIE41_RS09035 and ABIE41_RS09040 are separated by 126 nucleotides ABIE41_RS09025: ABIE41_RS09025 - potassium transporter Kup, at 1,869,761 to 1,871,761 _RS09025 ABIE41_RS09030: ABIE41_RS09030 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 1,871,878 to 1,873,152 _RS09030 ABIE41_RS09035: ABIE41_RS09035 - transcriptional repressor, at 1,873,181 to 1,873,723 _RS09035 ABIE41_RS09040: ABIE41_RS09040 - 3-hydroxybutyrate dehydrogenase, at 1,873,850 to 1,874,635 _RS09040 Position (kb) 1871 1872 1873 1874Strain fitness (log2 ratio) -3 -2 -1 0 1at 1873.384 kb on - strand, within ABIE41_RS09035at 1873.447 kb on - strand, within ABIE41_RS09035at 1873.593 kb on - strand, within ABIE41_RS09035at 1873.593 kb on - strand, within ABIE41_RS09035at 1873.812 kb on - strandat 1873.911 kb on - strandat 1873.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,873,384 - ABIE41_RS09035 0.37 -0.6
1,873,447 - ABIE41_RS09035 0.49 -1.3
1,873,593 - ABIE41_RS09035 0.76 -0.6
1,873,593 - ABIE41_RS09035 0.76 -2.8
1,873,812 - +1.6
1,873,911 - -0.1
1,873,911 - -0.3

Or see this region's nucleotide sequence