Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03400 and ABIE40_RS03405 overlap by 4 nucleotides ABIE40_RS03405 and ABIE40_RS03410 are separated by 55 nucleotides ABIE40_RS03410 and ABIE40_RS03415 are separated by 94 nucleotides ABIE40_RS03415 and ABIE40_RS03420 are separated by 263 nucleotides
ABIE40_RS03400: ABIE40_RS03400 - RNA polymerase sigma factor, at 677,325 to 677,930
_RS03400
ABIE40_RS03405: ABIE40_RS03405 - anti-sigma factor, at 677,927 to 678,724
_RS03405
ABIE40_RS03410: ABIE40_RS03410 - hypothetical protein, at 678,780 to 679,319
_RS03410
ABIE40_RS03415: ABIE40_RS03415 - DUF1328 domain-containing protein, at 679,414 to 679,575
_RS03415
ABIE40_RS03420: ABIE40_RS03420 - GH25 family lysozyme, at 679,839 to 680,846
_RS03420
Position (kb) 678
679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 677.792 kb on - strand, within ABIE40_RS03400 at 677.802 kb on + strand, within ABIE40_RS03400 at 677.802 kb on + strand, within ABIE40_RS03400 at 677.803 kb on - strand, within ABIE40_RS03400 at 677.803 kb on - strand, within ABIE40_RS03400 at 677.803 kb on - strand, within ABIE40_RS03400 at 677.848 kb on + strand, within ABIE40_RS03400 at 677.848 kb on + strand, within ABIE40_RS03400 at 677.848 kb on + strand, within ABIE40_RS03400 at 677.848 kb on + strand, within ABIE40_RS03400 at 677.849 kb on - strand, within ABIE40_RS03400 at 677.849 kb on - strand, within ABIE40_RS03400 at 677.849 kb on - strand, within ABIE40_RS03400 at 678.263 kb on + strand, within ABIE40_RS03405 at 678.329 kb on + strand, within ABIE40_RS03405 at 678.343 kb on + strand, within ABIE40_RS03405 at 678.491 kb on + strand, within ABIE40_RS03405 at 678.556 kb on + strand, within ABIE40_RS03405 at 678.556 kb on + strand, within ABIE40_RS03405 at 678.778 kb on + strand at 678.778 kb on + strand at 678.779 kb on - strand at 678.779 kb on - strand at 678.816 kb on + strand at 678.816 kb on + strand at 678.817 kb on - strand at 678.817 kb on - strand at 678.817 kb on - strand at 678.817 kb on - strand at 678.817 kb on - strand at 678.817 kb on - strand at 678.817 kb on - strand at 678.817 kb on - strand at 678.869 kb on + strand, within ABIE40_RS03410 at 678.870 kb on - strand, within ABIE40_RS03410 at 678.870 kb on - strand, within ABIE40_RS03410 at 678.951 kb on + strand, within ABIE40_RS03410 at 678.952 kb on - strand, within ABIE40_RS03410 at 678.952 kb on - strand, within ABIE40_RS03410 at 678.952 kb on - strand, within ABIE40_RS03410 at 678.952 kb on - strand, within ABIE40_RS03410 at 678.952 kb on - strand, within ABIE40_RS03410 at 678.952 kb on - strand, within ABIE40_RS03410 at 678.952 kb on - strand, within ABIE40_RS03410 at 679.053 kb on + strand, within ABIE40_RS03410 at 679.053 kb on + strand, within ABIE40_RS03410 at 679.053 kb on + strand, within ABIE40_RS03410 at 679.053 kb on + strand, within ABIE40_RS03410 at 679.053 kb on + strand, within ABIE40_RS03410 at 679.053 kb on + strand, within ABIE40_RS03410 at 679.054 kb on - strand, within ABIE40_RS03410 at 679.054 kb on - strand, within ABIE40_RS03410 at 679.054 kb on - strand, within ABIE40_RS03410 at 679.054 kb on - strand, within ABIE40_RS03410 at 679.068 kb on + strand, within ABIE40_RS03410 at 679.068 kb on + strand, within ABIE40_RS03410 at 679.245 kb on + strand, within ABIE40_RS03410 at 679.246 kb on - strand, within ABIE40_RS03410 at 679.363 kb on + strand at 679.363 kb on + strand at 679.363 kb on + strand at 679.363 kb on + strand at 679.363 kb on + strand at 679.364 kb on - strand at 679.382 kb on + strand at 679.383 kb on - strand at 679.385 kb on + strand at 679.385 kb on + strand at 679.385 kb on + strand at 679.385 kb on + strand at 679.385 kb on + strand at 679.386 kb on - strand at 679.386 kb on - strand at 679.386 kb on - strand at 679.402 kb on + strand at 679.403 kb on - strand at 679.403 kb on - strand at 679.403 kb on - strand at 679.420 kb on + strand at 679.420 kb on + strand at 679.420 kb on + strand at 679.423 kb on + strand at 679.423 kb on + strand at 679.423 kb on + strand at 679.423 kb on + strand at 679.423 kb on + strand at 679.423 kb on + strand at 679.423 kb on + strand at 679.423 kb on + strand at 679.423 kb on + strand at 679.424 kb on - strand at 679.424 kb on - strand at 679.433 kb on + strand, within ABIE40_RS03415 at 679.434 kb on - strand, within ABIE40_RS03415 at 679.434 kb on - strand, within ABIE40_RS03415 at 679.503 kb on - strand, within ABIE40_RS03415 at 679.503 kb on - strand, within ABIE40_RS03415 at 679.523 kb on + strand, within ABIE40_RS03415 at 679.523 kb on + strand, within ABIE40_RS03415 at 679.523 kb on + strand, within ABIE40_RS03415 at 679.524 kb on - strand, within ABIE40_RS03415 at 679.524 kb on - strand, within ABIE40_RS03415 at 679.784 kb on + strand at 679.785 kb on - strand at 679.879 kb on + strand at 679.880 kb on - strand at 680.160 kb on + strand, within ABIE40_RS03420 at 680.160 kb on + strand, within ABIE40_RS03420 at 680.160 kb on + strand, within ABIE40_RS03420 at 680.160 kb on + strand, within ABIE40_RS03420 at 680.160 kb on + strand, within ABIE40_RS03420 at 680.160 kb on + strand, within ABIE40_RS03420 at 680.160 kb on + strand, within ABIE40_RS03420 at 680.161 kb on - strand, within ABIE40_RS03420 at 680.161 kb on - strand, within ABIE40_RS03420 at 680.161 kb on - strand, within ABIE40_RS03420 at 680.161 kb on - strand, within ABIE40_RS03420 at 680.161 kb on - strand, within ABIE40_RS03420 at 680.161 kb on - strand, within ABIE40_RS03420 at 680.161 kb on - strand, within ABIE40_RS03420 at 680.161 kb on - strand, within ABIE40_RS03420 at 680.304 kb on + strand, within ABIE40_RS03420 at 680.304 kb on + strand, within ABIE40_RS03420 at 680.304 kb on + strand, within ABIE40_RS03420 at 680.305 kb on - strand, within ABIE40_RS03420 at 680.305 kb on - strand, within ABIE40_RS03420 at 680.305 kb on - strand, within ABIE40_RS03420 at 680.305 kb on - strand, within ABIE40_RS03420 at 680.306 kb on + strand, within ABIE40_RS03420 at 680.306 kb on + strand, within ABIE40_RS03420 at 680.306 kb on + strand, within ABIE40_RS03420 at 680.306 kb on + strand, within ABIE40_RS03420 at 680.306 kb on + strand, within ABIE40_RS03420 at 680.306 kb on + strand, within ABIE40_RS03420 at 680.306 kb on + strand, within ABIE40_RS03420 at 680.307 kb on - strand, within ABIE40_RS03420 at 680.307 kb on - strand, within ABIE40_RS03420 at 680.307 kb on - strand, within ABIE40_RS03420
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 677,792 - ABIE40_RS03400 0.77 -0.4 677,802 + ABIE40_RS03400 0.79 +0.2 677,802 + ABIE40_RS03400 0.79 -0.3 677,803 - ABIE40_RS03400 0.79 -0.4 677,803 - ABIE40_RS03400 0.79 +0.2 677,803 - ABIE40_RS03400 0.79 -0.6 677,848 + ABIE40_RS03400 0.86 -1.8 677,848 + ABIE40_RS03400 0.86 +1.5 677,848 + ABIE40_RS03400 0.86 -0.2 677,848 + ABIE40_RS03400 0.86 +0.7 677,849 - ABIE40_RS03400 0.86 +0.0 677,849 - ABIE40_RS03400 0.86 +0.1 677,849 - ABIE40_RS03400 0.86 +1.0 678,263 + ABIE40_RS03405 0.42 -3.1 678,329 + ABIE40_RS03405 0.50 -1.8 678,343 + ABIE40_RS03405 0.52 -1.3 678,491 + ABIE40_RS03405 0.71 -1.3 678,556 + ABIE40_RS03405 0.79 -1.3 678,556 + ABIE40_RS03405 0.79 -1.7 678,778 + -0.1 678,778 + -1.6 678,779 - -0.5 678,779 - +1.5 678,816 + +0.4 678,816 + +0.1 678,817 - -0.2 678,817 - -0.5 678,817 - -0.4 678,817 - -1.5 678,817 - -1.8 678,817 - -0.3 678,817 - +0.5 678,817 - +0.1 678,869 + ABIE40_RS03410 0.16 +0.0 678,870 - ABIE40_RS03410 0.17 +0.4 678,870 - ABIE40_RS03410 0.17 +0.5 678,951 + ABIE40_RS03410 0.32 +0.4 678,952 - ABIE40_RS03410 0.32 +0.8 678,952 - ABIE40_RS03410 0.32 -0.9 678,952 - ABIE40_RS03410 0.32 -1.3 678,952 - ABIE40_RS03410 0.32 -0.6 678,952 - ABIE40_RS03410 0.32 +0.7 678,952 - ABIE40_RS03410 0.32 +0.2 678,952 - ABIE40_RS03410 0.32 +0.3 679,053 + ABIE40_RS03410 0.51 -0.1 679,053 + ABIE40_RS03410 0.51 +0.3 679,053 + ABIE40_RS03410 0.51 +0.8 679,053 + ABIE40_RS03410 0.51 +2.1 679,053 + ABIE40_RS03410 0.51 -0.5 679,053 + ABIE40_RS03410 0.51 +0.3 679,054 - ABIE40_RS03410 0.51 -0.4 679,054 - ABIE40_RS03410 0.51 -0.2 679,054 - ABIE40_RS03410 0.51 -0.1 679,054 - ABIE40_RS03410 0.51 +0.9 679,068 + ABIE40_RS03410 0.53 -0.3 679,068 + ABIE40_RS03410 0.53 +0.6 679,245 + ABIE40_RS03410 0.86 -0.8 679,246 - ABIE40_RS03410 0.86 +0.2 679,363 + +0.7 679,363 + -0.0 679,363 + -0.2 679,363 + -0.0 679,363 + +0.6 679,364 - +0.0 679,382 + +0.2 679,383 - +1.4 679,385 + -1.4 679,385 + +0.7 679,385 + +0.0 679,385 + +1.5 679,385 + -0.1 679,386 - +0.1 679,386 - -2.0 679,386 - -0.1 679,402 + -1.2 679,403 - -0.2 679,403 - -1.1 679,403 - +1.4 679,420 + -0.3 679,420 + -0.3 679,420 + +0.2 679,423 + +0.6 679,423 + -0.3 679,423 + -0.0 679,423 + +0.3 679,423 + -0.1 679,423 + -0.9 679,423 + -1.3 679,423 + -0.1 679,423 + +0.1 679,424 - -1.5 679,424 - +1.1 679,433 + ABIE40_RS03415 0.12 +0.3 679,434 - ABIE40_RS03415 0.12 +0.3 679,434 - ABIE40_RS03415 0.12 -0.9 679,503 - ABIE40_RS03415 0.55 +1.7 679,503 - ABIE40_RS03415 0.55 +0.6 679,523 + ABIE40_RS03415 0.67 -0.8 679,523 + ABIE40_RS03415 0.67 -1.9 679,523 + ABIE40_RS03415 0.67 +1.0 679,524 - ABIE40_RS03415 0.68 +0.5 679,524 - ABIE40_RS03415 0.68 -1.0 679,784 + -1.5 679,785 - +0.8 679,879 + -1.0 679,880 - -0.1 680,160 + ABIE40_RS03420 0.32 -1.0 680,160 + ABIE40_RS03420 0.32 +0.7 680,160 + ABIE40_RS03420 0.32 -1.2 680,160 + ABIE40_RS03420 0.32 +0.2 680,160 + ABIE40_RS03420 0.32 +0.3 680,160 + ABIE40_RS03420 0.32 -1.1 680,160 + ABIE40_RS03420 0.32 -0.1 680,161 - ABIE40_RS03420 0.32 +0.5 680,161 - ABIE40_RS03420 0.32 -0.2 680,161 - ABIE40_RS03420 0.32 -1.0 680,161 - ABIE40_RS03420 0.32 -1.3 680,161 - ABIE40_RS03420 0.32 +0.3 680,161 - ABIE40_RS03420 0.32 +0.6 680,161 - ABIE40_RS03420 0.32 +1.2 680,161 - ABIE40_RS03420 0.32 -1.3 680,304 + ABIE40_RS03420 0.46 -0.4 680,304 + ABIE40_RS03420 0.46 +0.5 680,304 + ABIE40_RS03420 0.46 +0.8 680,305 - ABIE40_RS03420 0.46 +0.2 680,305 - ABIE40_RS03420 0.46 -0.8 680,305 - ABIE40_RS03420 0.46 +0.1 680,305 - ABIE40_RS03420 0.46 -0.2 680,306 + ABIE40_RS03420 0.46 +0.7 680,306 + ABIE40_RS03420 0.46 -0.1 680,306 + ABIE40_RS03420 0.46 -0.0 680,306 + ABIE40_RS03420 0.46 -1.3 680,306 + ABIE40_RS03420 0.46 -0.6 680,306 + ABIE40_RS03420 0.46 -0.4 680,306 + ABIE40_RS03420 0.46 +0.2 680,307 - ABIE40_RS03420 0.46 +1.1 680,307 - ABIE40_RS03420 0.46 +1.5 680,307 - ABIE40_RS03420 0.46 -0.4
Or see this region's nucleotide sequence