Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02140

Experiment: Gelatin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02135 and ABIE40_RS02140 are separated by 61 nucleotidesABIE40_RS02140 and ABIE40_RS02145 overlap by 56 nucleotidesABIE40_RS02145 and ABIE40_RS02150 are separated by 117 nucleotides ABIE40_RS02135: ABIE40_RS02135 - orotate phosphoribosyltransferase, at 418,550 to 419,245 _RS02135 ABIE40_RS02140: ABIE40_RS02140 - carbohydrate kinase, at 419,307 to 420,233 _RS02140 ABIE40_RS02145: ABIE40_RS02145 - alpha/beta hydrolase, at 420,178 to 421,038 _RS02145 ABIE40_RS02150: ABIE40_RS02150 - glucose-6-phosphate isomerase, at 421,156 to 422,781 _RS02150 Position (kb) 419 420 421Strain fitness (log2 ratio) -2 -1 0 1 2at 418.362 kb on - strandat 418.367 kb on + strandat 418.376 kb on - strandat 418.513 kb on + strandat 418.523 kb on + strandat 418.523 kb on + strandat 418.531 kb on + strandat 418.531 kb on + strandat 419.226 kb on + strandat 419.243 kb on + strandat 419.266 kb on + strandat 419.267 kb on - strandat 419.592 kb on + strand, within ABIE40_RS02140at 419.602 kb on - strand, within ABIE40_RS02140at 419.721 kb on + strand, within ABIE40_RS02140at 419.982 kb on + strand, within ABIE40_RS02140at 420.319 kb on + strand, within ABIE40_RS02145at 420.319 kb on + strand, within ABIE40_RS02145at 420.319 kb on + strand, within ABIE40_RS02145at 420.320 kb on - strand, within ABIE40_RS02145at 420.359 kb on + strand, within ABIE40_RS02145at 420.360 kb on - strand, within ABIE40_RS02145at 420.360 kb on - strand, within ABIE40_RS02145at 420.360 kb on - strand, within ABIE40_RS02145at 420.366 kb on + strand, within ABIE40_RS02145at 420.366 kb on + strand, within ABIE40_RS02145at 420.366 kb on + strand, within ABIE40_RS02145at 420.367 kb on - strand, within ABIE40_RS02145at 420.367 kb on - strand, within ABIE40_RS02145at 420.367 kb on - strand, within ABIE40_RS02145at 420.367 kb on - strand, within ABIE40_RS02145at 420.367 kb on - strand, within ABIE40_RS02145at 420.408 kb on + strand, within ABIE40_RS02145at 420.409 kb on - strand, within ABIE40_RS02145at 420.409 kb on - strand, within ABIE40_RS02145at 420.433 kb on + strand, within ABIE40_RS02145at 420.433 kb on + strand, within ABIE40_RS02145at 420.447 kb on + strand, within ABIE40_RS02145at 420.447 kb on + strand, within ABIE40_RS02145at 420.449 kb on + strand, within ABIE40_RS02145at 420.450 kb on - strand, within ABIE40_RS02145at 420.450 kb on - strand, within ABIE40_RS02145at 420.530 kb on + strand, within ABIE40_RS02145at 420.530 kb on + strand, within ABIE40_RS02145at 420.530 kb on + strand, within ABIE40_RS02145at 420.530 kb on + strand, within ABIE40_RS02145at 420.530 kb on + strand, within ABIE40_RS02145at 420.530 kb on + strand, within ABIE40_RS02145at 420.531 kb on - strand, within ABIE40_RS02145at 420.531 kb on - strand, within ABIE40_RS02145at 420.531 kb on - strand, within ABIE40_RS02145at 420.531 kb on - strand, within ABIE40_RS02145at 420.531 kb on - strand, within ABIE40_RS02145at 420.606 kb on + strand, within ABIE40_RS02145at 420.606 kb on + strand, within ABIE40_RS02145at 420.606 kb on + strand, within ABIE40_RS02145at 420.606 kb on + strand, within ABIE40_RS02145at 420.606 kb on + strand, within ABIE40_RS02145at 420.607 kb on - strand, within ABIE40_RS02145at 420.607 kb on - strand, within ABIE40_RS02145at 420.607 kb on - strand, within ABIE40_RS02145at 420.672 kb on + strand, within ABIE40_RS02145at 420.761 kb on + strand, within ABIE40_RS02145at 420.761 kb on + strand, within ABIE40_RS02145at 420.761 kb on + strand, within ABIE40_RS02145at 420.761 kb on + strand, within ABIE40_RS02145at 420.761 kb on + strand, within ABIE40_RS02145at 420.762 kb on - strand, within ABIE40_RS02145at 420.762 kb on - strand, within ABIE40_RS02145at 420.762 kb on - strand, within ABIE40_RS02145at 420.762 kb on - strand, within ABIE40_RS02145at 420.762 kb on - strand, within ABIE40_RS02145at 420.762 kb on - strand, within ABIE40_RS02145at 420.929 kb on + strand, within ABIE40_RS02145at 420.930 kb on - strand, within ABIE40_RS02145at 420.930 kb on - strand, within ABIE40_RS02145at 421.073 kb on + strandat 421.073 kb on + strandat 421.073 kb on + strandat 421.073 kb on + strandat 421.074 kb on - strandat 421.074 kb on - strandat 421.074 kb on - strandat 421.137 kb on + strandat 421.137 kb on + strandat 421.138 kb on - strandat 421.157 kb on + strandat 421.157 kb on + strandat 421.157 kb on + strandat 421.157 kb on + strandat 421.158 kb on - strandat 421.158 kb on - strandat 421.158 kb on - strandat 421.158 kb on - strandat 421.158 kb on - strandat 421.158 kb on - strandat 421.158 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
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418,362 - -1.0
418,367 + +2.1
418,376 - +0.1
418,513 + +2.3
418,523 + +0.1
418,523 + -0.0
418,531 + -0.3
418,531 + +0.9
419,226 + -0.1
419,243 + +1.3
419,266 + -2.2
419,267 - -2.3
419,592 + ABIE40_RS02140 0.31 -1.7
419,602 - ABIE40_RS02140 0.32 +1.7
419,721 + ABIE40_RS02140 0.45 +0.7
419,982 + ABIE40_RS02140 0.73 -0.9
420,319 + ABIE40_RS02145 0.16 +0.1
420,319 + ABIE40_RS02145 0.16 -0.0
420,319 + ABIE40_RS02145 0.16 -2.0
420,320 - ABIE40_RS02145 0.16 +1.1
420,359 + ABIE40_RS02145 0.21 -0.6
420,360 - ABIE40_RS02145 0.21 -1.0
420,360 - ABIE40_RS02145 0.21 -0.7
420,360 - ABIE40_RS02145 0.21 +0.6
420,366 + ABIE40_RS02145 0.22 -1.3
420,366 + ABIE40_RS02145 0.22 +0.3
420,366 + ABIE40_RS02145 0.22 -0.1
420,367 - ABIE40_RS02145 0.22 +0.1
420,367 - ABIE40_RS02145 0.22 -0.1
420,367 - ABIE40_RS02145 0.22 -0.2
420,367 - ABIE40_RS02145 0.22 +0.4
420,367 - ABIE40_RS02145 0.22 +1.6
420,408 + ABIE40_RS02145 0.27 -0.1
420,409 - ABIE40_RS02145 0.27 +0.4
420,409 - ABIE40_RS02145 0.27 -0.6
420,433 + ABIE40_RS02145 0.30 +0.5
420,433 + ABIE40_RS02145 0.30 +0.2
420,447 + ABIE40_RS02145 0.31 -0.0
420,447 + ABIE40_RS02145 0.31 -0.7
420,449 + ABIE40_RS02145 0.31 +0.2
420,450 - ABIE40_RS02145 0.32 -1.0
420,450 - ABIE40_RS02145 0.32 -0.3
420,530 + ABIE40_RS02145 0.41 +1.2
420,530 + ABIE40_RS02145 0.41 -1.3
420,530 + ABIE40_RS02145 0.41 -0.2
420,530 + ABIE40_RS02145 0.41 +1.0
420,530 + ABIE40_RS02145 0.41 -0.1
420,530 + ABIE40_RS02145 0.41 -0.4
420,531 - ABIE40_RS02145 0.41 -0.0
420,531 - ABIE40_RS02145 0.41 +0.6
420,531 - ABIE40_RS02145 0.41 +0.1
420,531 - ABIE40_RS02145 0.41 -0.7
420,531 - ABIE40_RS02145 0.41 -0.1
420,606 + ABIE40_RS02145 0.50 +1.1
420,606 + ABIE40_RS02145 0.50 +0.3
420,606 + ABIE40_RS02145 0.50 -0.3
420,606 + ABIE40_RS02145 0.50 -0.3
420,606 + ABIE40_RS02145 0.50 +0.4
420,607 - ABIE40_RS02145 0.50 -0.1
420,607 - ABIE40_RS02145 0.50 +1.0
420,607 - ABIE40_RS02145 0.50 -0.1
420,672 + ABIE40_RS02145 0.57 +0.3
420,761 + ABIE40_RS02145 0.68 +0.3
420,761 + ABIE40_RS02145 0.68 -0.3
420,761 + ABIE40_RS02145 0.68 -0.3
420,761 + ABIE40_RS02145 0.68 -0.7
420,761 + ABIE40_RS02145 0.68 -0.6
420,762 - ABIE40_RS02145 0.68 +0.2
420,762 - ABIE40_RS02145 0.68 -1.5
420,762 - ABIE40_RS02145 0.68 -0.4
420,762 - ABIE40_RS02145 0.68 -1.1
420,762 - ABIE40_RS02145 0.68 +0.2
420,762 - ABIE40_RS02145 0.68 -0.1
420,929 + ABIE40_RS02145 0.87 +0.4
420,930 - ABIE40_RS02145 0.87 +1.4
420,930 - ABIE40_RS02145 0.87 +0.3
421,073 + +1.0
421,073 + +0.4
421,073 + +0.1
421,073 + -1.2
421,074 - -0.4
421,074 - -0.8
421,074 - +0.4
421,137 + +1.1
421,137 + +1.0
421,138 - +2.7
421,157 + +0.2
421,157 + -0.6
421,157 + -2.5
421,157 + -1.3
421,158 - +0.0
421,158 - -1.1
421,158 - -1.0
421,158 - -0.9
421,158 - -1.1
421,158 - +1.0
421,158 - -0.2

Or see this region's nucleotide sequence