Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29065 and ABID97_RS29070 are separated by 166 nucleotides ABID97_RS29070 and ABID97_RS29075 are separated by 71 nucleotides ABID97_RS29075 and ABID97_RS29080 are separated by 14 nucleotides ABID97_RS29080 and ABID97_RS29085 are separated by 107 nucleotides
ABID97_RS29065: ABID97_RS29065 - LysR family transcriptional regulator, at 732,291 to 733,199
_RS29065
ABID97_RS29070: ABID97_RS29070 - pirin family protein, at 733,366 to 734,088
_RS29070
ABID97_RS29075: ABID97_RS29075 - hydrolase, at 734,160 to 734,813
_RS29075
ABID97_RS29080: ABID97_RS29080 - DUF1427 family protein, at 734,828 to 735,103
_RS29080
ABID97_RS29085: ABID97_RS29085 - amidohydrolase, at 735,211 to 737,103
_RS29085
Position (kb) 734
735 Strain fitness (log2 ratio) -1
0
1
2
3 at 733.451 kb on - strand, within ABID97_RS29070 at 733.564 kb on + strand, within ABID97_RS29070 at 733.565 kb on - strand, within ABID97_RS29070 at 733.861 kb on + strand, within ABID97_RS29070 at 733.924 kb on + strand, within ABID97_RS29070 at 733.924 kb on + strand, within ABID97_RS29070 at 733.924 kb on + strand, within ABID97_RS29070 at 733.924 kb on + strand, within ABID97_RS29070 at 733.924 kb on + strand, within ABID97_RS29070 at 733.925 kb on - strand, within ABID97_RS29070 at 733.925 kb on - strand, within ABID97_RS29070 at 733.925 kb on - strand, within ABID97_RS29070 at 733.925 kb on - strand, within ABID97_RS29070 at 734.163 kb on + strand at 734.676 kb on + strand, within ABID97_RS29075 at 734.677 kb on - strand, within ABID97_RS29075 at 734.718 kb on + strand, within ABID97_RS29075 at 734.718 kb on + strand, within ABID97_RS29075 at 734.719 kb on - strand, within ABID97_RS29075 at 734.719 kb on - strand, within ABID97_RS29075 at 734.719 kb on - strand, within ABID97_RS29075 at 734.719 kb on - strand, within ABID97_RS29075 at 734.778 kb on + strand at 734.837 kb on + strand at 734.838 kb on - strand at 734.838 kb on - strand at 734.879 kb on + strand, within ABID97_RS29080 at 735.661 kb on + strand, within ABID97_RS29085 at 735.662 kb on - strand, within ABID97_RS29085 at 735.706 kb on + strand, within ABID97_RS29085 at 735.707 kb on - strand, within ABID97_RS29085
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 733,451 - ABID97_RS29070 0.12 +0.3 733,564 + ABID97_RS29070 0.27 +1.9 733,565 - ABID97_RS29070 0.28 +0.1 733,861 + ABID97_RS29070 0.68 -0.2 733,924 + ABID97_RS29070 0.77 +0.3 733,924 + ABID97_RS29070 0.77 -0.1 733,924 + ABID97_RS29070 0.77 +0.2 733,924 + ABID97_RS29070 0.77 +0.3 733,924 + ABID97_RS29070 0.77 +0.0 733,925 - ABID97_RS29070 0.77 +0.3 733,925 - ABID97_RS29070 0.77 +0.0 733,925 - ABID97_RS29070 0.77 +0.0 733,925 - ABID97_RS29070 0.77 -0.2 734,163 + +0.3 734,676 + ABID97_RS29075 0.79 -0.3 734,677 - ABID97_RS29075 0.79 +0.1 734,718 + ABID97_RS29075 0.85 -0.4 734,718 + ABID97_RS29075 0.85 -0.6 734,719 - ABID97_RS29075 0.85 -0.2 734,719 - ABID97_RS29075 0.85 -1.0 734,719 - ABID97_RS29075 0.85 -0.5 734,719 - ABID97_RS29075 0.85 -0.2 734,778 + +0.8 734,837 + +0.1 734,838 - +3.2 734,838 - -0.6 734,879 + ABID97_RS29080 0.18 +0.3 735,661 + ABID97_RS29085 0.24 -0.1 735,662 - ABID97_RS29085 0.24 +0.1 735,706 + ABID97_RS29085 0.26 +0.9 735,707 - ABID97_RS29085 0.26 +0.0
Or see this region's nucleotide sequence