Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26675

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26665 and ABID97_RS26670 are separated by 24 nucleotidesABID97_RS26670 and ABID97_RS26675 are separated by 85 nucleotidesABID97_RS26675 and ABID97_RS26680 overlap by 4 nucleotides ABID97_RS26665: ABID97_RS26665 - DUF1801 domain-containing protein, at 255,634 to 256,011 _RS26665 ABID97_RS26670: ABID97_RS26670 - DUF1801 domain-containing protein, at 256,036 to 256,461 _RS26670 ABID97_RS26675: ABID97_RS26675 - DNA repair exonuclease, at 256,547 to 257,707 _RS26675 ABID97_RS26680: ABID97_RS26680 - AAA family ATPase, at 257,704 to 260,367 _RS26680 Position (kb) 256 257 258Strain fitness (log2 ratio) -1 0 1at 255.670 kb on + strandat 255.671 kb on - strandat 256.181 kb on - strand, within ABID97_RS26670at 256.237 kb on - strand, within ABID97_RS26670at 256.256 kb on + strand, within ABID97_RS26670at 256.535 kb on - strandat 256.921 kb on - strand, within ABID97_RS26675at 256.961 kb on + strand, within ABID97_RS26675at 256.961 kb on + strand, within ABID97_RS26675at 256.961 kb on + strand, within ABID97_RS26675at 256.961 kb on + strand, within ABID97_RS26675at 256.962 kb on - strand, within ABID97_RS26675

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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255,670 + -0.2
255,671 - -0.5
256,181 - ABID97_RS26670 0.34 -0.2
256,237 - ABID97_RS26670 0.47 +0.5
256,256 + ABID97_RS26670 0.52 -0.1
256,535 - -0.4
256,921 - ABID97_RS26675 0.32 +0.4
256,961 + ABID97_RS26675 0.36 -0.0
256,961 + ABID97_RS26675 0.36 +0.1
256,961 + ABID97_RS26675 0.36 -0.1
256,961 + ABID97_RS26675 0.36 +0.1
256,962 - ABID97_RS26675 0.36 -0.2

Or see this region's nucleotide sequence