Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23490

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23485 and ABID97_RS23490 are separated by 30 nucleotidesABID97_RS23490 and ABID97_RS23495 are separated by 190 nucleotidesABID97_RS23495 and ABID97_RS23500 are separated by 19 nucleotides ABID97_RS23485: ABID97_RS23485 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 4,856,631 to 4,857,860 _RS23485 ABID97_RS23490: ABID97_RS23490 - preprotein translocase subunit SecA, at 4,857,891 to 4,860,683 _RS23490 ABID97_RS23495: ABID97_RS23495 - hypothetical protein, at 4,860,874 to 4,861,182 _RS23495 ABID97_RS23500: ABID97_RS23500 - hypothetical protein, at 4,861,202 to 4,861,906 _RS23500 Position (kb) 4857 4858 4859 4860 4861Strain fitness (log2 ratio) -1 0 1at 4857.647 kb on - strand, within ABID97_RS23485at 4857.867 kb on + strandat 4857.868 kb on - strandat 4857.868 kb on - strandat 4857.919 kb on + strandat 4857.920 kb on - strandat 4857.920 kb on - strandat 4858.084 kb on + strandat 4858.084 kb on + strandat 4858.085 kb on - strandat 4858.085 kb on - strandat 4858.085 kb on - strandat 4860.743 kb on - strandat 4860.743 kb on - strandat 4860.743 kb on - strandat 4860.843 kb on + strandat 4860.843 kb on + strandat 4861.204 kb on - strandat 4861.204 kb on - strandat 4861.268 kb on - strandat 4861.268 kb on - strandat 4861.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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4,857,647 - ABID97_RS23485 0.83 +0.7
4,857,867 + +0.1
4,857,868 - +0.3
4,857,868 - -0.2
4,857,919 + -1.3
4,857,920 - -0.2
4,857,920 - +0.3
4,858,084 + -0.0
4,858,084 + -0.3
4,858,085 - -0.7
4,858,085 - -0.2
4,858,085 - -0.9
4,860,743 - -0.5
4,860,743 - +0.1
4,860,743 - +0.2
4,860,843 + -0.4
4,860,843 + -0.6
4,861,204 - -0.8
4,861,204 - -0.3
4,861,268 - -0.0
4,861,268 - -0.7
4,861,268 - +0.1

Or see this region's nucleotide sequence