Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23485 and ABID97_RS23490 are separated by 30 nucleotides ABID97_RS23490 and ABID97_RS23495 are separated by 190 nucleotides ABID97_RS23495 and ABID97_RS23500 are separated by 19 nucleotides
ABID97_RS23485: ABID97_RS23485 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 4,856,631 to 4,857,860
_RS23485
ABID97_RS23490: ABID97_RS23490 - preprotein translocase subunit SecA, at 4,857,891 to 4,860,683
_RS23490
ABID97_RS23495: ABID97_RS23495 - hypothetical protein, at 4,860,874 to 4,861,182
_RS23495
ABID97_RS23500: ABID97_RS23500 - hypothetical protein, at 4,861,202 to 4,861,906
_RS23500
Position (kb)
4857
4858
4859
4860
4861 Strain fitness (log2 ratio)
-1
0
1 at 4857.647 kb on - strand, within ABID97_RS23485 at 4857.867 kb on + strand at 4857.868 kb on - strand at 4857.868 kb on - strand at 4857.919 kb on + strand at 4857.920 kb on - strand at 4857.920 kb on - strand at 4858.084 kb on + strand at 4858.084 kb on + strand at 4858.085 kb on - strand at 4858.085 kb on - strand at 4858.085 kb on - strand at 4860.743 kb on - strand at 4860.743 kb on - strand at 4860.743 kb on - strand at 4860.843 kb on + strand at 4860.843 kb on + strand at 4861.204 kb on - strand at 4861.204 kb on - strand at 4861.268 kb on - strand at 4861.268 kb on - strand at 4861.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 4,857,647 - ABID97_RS23485 0.83 +0.7 4,857,867 + +0.1 4,857,868 - +0.3 4,857,868 - -0.2 4,857,919 + -1.3 4,857,920 - -0.2 4,857,920 - +0.3 4,858,084 + -0.0 4,858,084 + -0.3 4,858,085 - -0.7 4,858,085 - -0.2 4,858,085 - -0.9 4,860,743 - -0.5 4,860,743 - +0.1 4,860,743 - +0.2 4,860,843 + -0.4 4,860,843 + -0.6 4,861,204 - -0.8 4,861,204 - -0.3 4,861,268 - -0.0 4,861,268 - -0.7 4,861,268 - +0.1
Or see this region's nucleotide sequence