Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23070

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23065 and ABID97_RS23070 are separated by 4 nucleotidesABID97_RS23070 and ABID97_RS23075 are separated by 78 nucleotidesABID97_RS23075 and ABID97_RS23080 are separated by 13 nucleotidesABID97_RS23080 and ABID97_RS23085 are separated by 62 nucleotides ABID97_RS23065: ABID97_RS23065 - trypsin-like peptidase domain-containing protein, at 4,774,098 to 4,775,258 _RS23065 ABID97_RS23070: ABID97_RS23070 - twin-arginine translocase subunit TatC, at 4,775,263 to 4,776,072 _RS23070 ABID97_RS23075: ABID97_RS23075 - Sec-independent protein translocase protein TatB, at 4,776,151 to 4,776,609 _RS23075 ABID97_RS23080: ABID97_RS23080 - Sec-independent protein translocase subunit TatA, at 4,776,623 to 4,776,871 _RS23080 ABID97_RS23085: ABID97_RS23085 - histidine triad nucleotide-binding protein, at 4,776,934 to 4,777,293 _RS23085 Position (kb) 4775 4776 4777Strain fitness (log2 ratio) -2 -1 0 1at 4774.443 kb on + strand, within ABID97_RS23065at 4774.443 kb on + strand, within ABID97_RS23065at 4774.444 kb on - strand, within ABID97_RS23065at 4774.444 kb on - strand, within ABID97_RS23065at 4774.444 kb on - strand, within ABID97_RS23065at 4774.830 kb on + strand, within ABID97_RS23065at 4774.831 kb on - strand, within ABID97_RS23065at 4775.324 kb on + strandat 4776.153 kb on - strandat 4776.612 kb on - strandat 4776.612 kb on - strandat 4776.612 kb on - strandat 4776.612 kb on - strandat 4776.612 kb on - strandat 4776.612 kb on - strandat 4776.929 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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4,774,443 + ABID97_RS23065 0.30 +0.5
4,774,443 + ABID97_RS23065 0.30 +1.3
4,774,444 - ABID97_RS23065 0.30 +0.5
4,774,444 - ABID97_RS23065 0.30 +0.8
4,774,444 - ABID97_RS23065 0.30 +0.6
4,774,830 + ABID97_RS23065 0.63 +0.1
4,774,831 - ABID97_RS23065 0.63 -0.4
4,775,324 + -0.2
4,776,153 - +0.1
4,776,612 - -0.6
4,776,612 - -2.1
4,776,612 - -1.0
4,776,612 - -0.4
4,776,612 - -1.3
4,776,612 - -0.8
4,776,929 - +0.2

Or see this region's nucleotide sequence