Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23065 and ABID97_RS23070 are separated by 4 nucleotides ABID97_RS23070 and ABID97_RS23075 are separated by 78 nucleotides ABID97_RS23075 and ABID97_RS23080 are separated by 13 nucleotides ABID97_RS23080 and ABID97_RS23085 are separated by 62 nucleotides
ABID97_RS23065: ABID97_RS23065 - trypsin-like peptidase domain-containing protein, at 4,774,098 to 4,775,258
_RS23065
ABID97_RS23070: ABID97_RS23070 - twin-arginine translocase subunit TatC, at 4,775,263 to 4,776,072
_RS23070
ABID97_RS23075: ABID97_RS23075 - Sec-independent protein translocase protein TatB, at 4,776,151 to 4,776,609
_RS23075
ABID97_RS23080: ABID97_RS23080 - Sec-independent protein translocase subunit TatA, at 4,776,623 to 4,776,871
_RS23080
ABID97_RS23085: ABID97_RS23085 - histidine triad nucleotide-binding protein, at 4,776,934 to 4,777,293
_RS23085
Position (kb)
4775
4776
4777 Strain fitness (log2 ratio)
-2
-1
0
1 at 4774.443 kb on + strand, within ABID97_RS23065 at 4774.443 kb on + strand, within ABID97_RS23065 at 4774.444 kb on - strand, within ABID97_RS23065 at 4774.444 kb on - strand, within ABID97_RS23065 at 4774.444 kb on - strand, within ABID97_RS23065 at 4774.830 kb on + strand, within ABID97_RS23065 at 4774.831 kb on - strand, within ABID97_RS23065 at 4775.324 kb on + strand at 4776.153 kb on - strand at 4776.612 kb on - strand at 4776.612 kb on - strand at 4776.612 kb on - strand at 4776.612 kb on - strand at 4776.612 kb on - strand at 4776.612 kb on - strand at 4776.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 4,774,443 + ABID97_RS23065 0.30 +0.5 4,774,443 + ABID97_RS23065 0.30 +1.3 4,774,444 - ABID97_RS23065 0.30 +0.5 4,774,444 - ABID97_RS23065 0.30 +0.8 4,774,444 - ABID97_RS23065 0.30 +0.6 4,774,830 + ABID97_RS23065 0.63 +0.1 4,774,831 - ABID97_RS23065 0.63 -0.4 4,775,324 + -0.2 4,776,153 - +0.1 4,776,612 - -0.6 4,776,612 - -2.1 4,776,612 - -1.0 4,776,612 - -0.4 4,776,612 - -1.3 4,776,612 - -0.8 4,776,929 - +0.2
Or see this region's nucleotide sequence