Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11835 and ABID97_RS11840 are separated by 174 nucleotides ABID97_RS11840 and ABID97_RS11845 are separated by 41 nucleotides ABID97_RS11845 and ABID97_RS11850 overlap by 1 nucleotides ABID97_RS11850 and ABID97_RS11855 are separated by 201 nucleotides
ABID97_RS11835: ABID97_RS11835 - ZIP family metal transporter, at 2,443,864 to 2,444,769
_RS11835
ABID97_RS11840: ABID97_RS11840 - PH domain-containing protein, at 2,444,944 to 2,445,363
_RS11840
ABID97_RS11845: ABID97_RS11845 - hypothetical protein, at 2,445,405 to 2,447,153
_RS11845
ABID97_RS11850: ABID97_RS11850 - dual specificity protein phosphatase, at 2,447,153 to 2,447,683
_RS11850
ABID97_RS11855: ABID97_RS11855 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 2,447,885 to 2,449,270
_RS11855
Position (kb)
2445
2446
2447
2448 Strain fitness (log2 ratio)
-1
0
1
2 at 2444.945 kb on + strand at 2444.946 kb on - strand at 2444.946 kb on - strand at 2444.946 kb on - strand at 2445.184 kb on - strand, within ABID97_RS11840 at 2445.442 kb on + strand at 2445.547 kb on + strand at 2445.547 kb on + strand at 2445.548 kb on - strand at 2445.548 kb on - strand at 2445.548 kb on - strand at 2445.548 kb on - strand at 2446.751 kb on - strand, within ABID97_RS11845 at 2446.771 kb on + strand, within ABID97_RS11845 at 2447.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 2,444,945 + +0.6 2,444,946 - +0.0 2,444,946 - +0.8 2,444,946 - +0.6 2,445,184 - ABID97_RS11840 0.57 +1.0 2,445,442 + -0.5 2,445,547 + +0.4 2,445,547 + +0.0 2,445,548 - -0.4 2,445,548 - -0.1 2,445,548 - +0.4 2,445,548 - +0.1 2,446,751 - ABID97_RS11845 0.77 -0.2 2,446,771 + ABID97_RS11845 0.78 +2.0 2,447,847 + +0.3
Or see this region's nucleotide sequence