Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11845

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11835 and ABID97_RS11840 are separated by 174 nucleotidesABID97_RS11840 and ABID97_RS11845 are separated by 41 nucleotidesABID97_RS11845 and ABID97_RS11850 overlap by 1 nucleotidesABID97_RS11850 and ABID97_RS11855 are separated by 201 nucleotides ABID97_RS11835: ABID97_RS11835 - ZIP family metal transporter, at 2,443,864 to 2,444,769 _RS11835 ABID97_RS11840: ABID97_RS11840 - PH domain-containing protein, at 2,444,944 to 2,445,363 _RS11840 ABID97_RS11845: ABID97_RS11845 - hypothetical protein, at 2,445,405 to 2,447,153 _RS11845 ABID97_RS11850: ABID97_RS11850 - dual specificity protein phosphatase, at 2,447,153 to 2,447,683 _RS11850 ABID97_RS11855: ABID97_RS11855 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 2,447,885 to 2,449,270 _RS11855 Position (kb) 2445 2446 2447 2448Strain fitness (log2 ratio) -1 0 1 2at 2444.945 kb on + strandat 2444.946 kb on - strandat 2444.946 kb on - strandat 2444.946 kb on - strandat 2445.184 kb on - strand, within ABID97_RS11840at 2445.442 kb on + strandat 2445.547 kb on + strandat 2445.547 kb on + strandat 2445.548 kb on - strandat 2445.548 kb on - strandat 2445.548 kb on - strandat 2445.548 kb on - strandat 2446.751 kb on - strand, within ABID97_RS11845at 2446.771 kb on + strand, within ABID97_RS11845at 2447.847 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,444,945 + +0.6
2,444,946 - +0.0
2,444,946 - +0.8
2,444,946 - +0.6
2,445,184 - ABID97_RS11840 0.57 +1.0
2,445,442 + -0.5
2,445,547 + +0.4
2,445,547 + +0.0
2,445,548 - -0.4
2,445,548 - -0.1
2,445,548 - +0.4
2,445,548 - +0.1
2,446,751 - ABID97_RS11845 0.77 -0.2
2,446,771 + ABID97_RS11845 0.78 +2.0
2,447,847 + +0.3

Or see this region's nucleotide sequence