Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10250

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10240 and ABID97_RS10245 overlap by 4 nucleotidesABID97_RS10245 and ABID97_RS10250 are separated by 18 nucleotidesABID97_RS10250 and ABID97_RS10255 are separated by 71 nucleotidesABID97_RS10255 and ABID97_RS10260 are separated by 37 nucleotides ABID97_RS10240: ABID97_RS10240 - glutathione S-transferase, at 2,125,406 to 2,126,044 _RS10240 ABID97_RS10245: ABID97_RS10245 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,126,041 to 2,126,904 _RS10245 ABID97_RS10250: ABID97_RS10250 - Rieske 2Fe-2S domain-containing protein, at 2,126,923 to 2,127,615 _RS10250 ABID97_RS10255: ABID97_RS10255 - type II 3-dehydroquinate dehydratase, at 2,127,687 to 2,128,127 _RS10255 ABID97_RS10260: ABID97_RS10260 - SpoVR family protein, at 2,128,165 to 2,129,704 _RS10260 Position (kb) 2126 2127 2128Strain fitness (log2 ratio) -2 -1 0 1at 2125.966 kb on - strand, within ABID97_RS10240at 2126.026 kb on - strandat 2126.031 kb on + strandat 2126.031 kb on + strandat 2126.032 kb on - strandat 2126.096 kb on + strandat 2126.096 kb on + strandat 2126.348 kb on + strand, within ABID97_RS10245at 2126.348 kb on + strand, within ABID97_RS10245at 2126.381 kb on + strand, within ABID97_RS10245at 2126.387 kb on + strand, within ABID97_RS10245at 2126.387 kb on + strand, within ABID97_RS10245at 2126.388 kb on - strand, within ABID97_RS10245at 2126.388 kb on - strand, within ABID97_RS10245at 2126.492 kb on + strand, within ABID97_RS10245at 2126.492 kb on + strand, within ABID97_RS10245at 2126.703 kb on - strand, within ABID97_RS10245at 2127.371 kb on + strand, within ABID97_RS10250at 2127.386 kb on + strand, within ABID97_RS10250at 2127.661 kb on + strandat 2128.210 kb on - strandat 2128.400 kb on + strand, within ABID97_RS10260

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,125,966 - ABID97_RS10240 0.88 -1.2
2,126,026 - -1.0
2,126,031 + -0.1
2,126,031 + -0.3
2,126,032 - +0.2
2,126,096 + +0.1
2,126,096 + +0.6
2,126,348 + ABID97_RS10245 0.36 -0.3
2,126,348 + ABID97_RS10245 0.36 -0.1
2,126,381 + ABID97_RS10245 0.39 +0.5
2,126,387 + ABID97_RS10245 0.40 -1.0
2,126,387 + ABID97_RS10245 0.40 -0.1
2,126,388 - ABID97_RS10245 0.40 -0.9
2,126,388 - ABID97_RS10245 0.40 +0.7
2,126,492 + ABID97_RS10245 0.52 +0.3
2,126,492 + ABID97_RS10245 0.52 -2.0
2,126,703 - ABID97_RS10245 0.77 +0.2
2,127,371 + ABID97_RS10250 0.65 +0.0
2,127,386 + ABID97_RS10250 0.67 -0.1
2,127,661 + +0.1
2,128,210 - -1.0
2,128,400 + ABID97_RS10260 0.15 -0.9

Or see this region's nucleotide sequence