Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10240 and ABID97_RS10245 overlap by 4 nucleotides ABID97_RS10245 and ABID97_RS10250 are separated by 18 nucleotides ABID97_RS10250 and ABID97_RS10255 are separated by 71 nucleotides ABID97_RS10255 and ABID97_RS10260 are separated by 37 nucleotides
ABID97_RS10240: ABID97_RS10240 - glutathione S-transferase, at 2,125,406 to 2,126,044
_RS10240
ABID97_RS10245: ABID97_RS10245 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,126,041 to 2,126,904
_RS10245
ABID97_RS10250: ABID97_RS10250 - Rieske 2Fe-2S domain-containing protein, at 2,126,923 to 2,127,615
_RS10250
ABID97_RS10255: ABID97_RS10255 - type II 3-dehydroquinate dehydratase, at 2,127,687 to 2,128,127
_RS10255
ABID97_RS10260: ABID97_RS10260 - SpoVR family protein, at 2,128,165 to 2,129,704
_RS10260
Position (kb)
2126
2127
2128 Strain fitness (log2 ratio)
-2
-1
0
1 at 2125.966 kb on - strand, within ABID97_RS10240 at 2126.026 kb on - strand at 2126.031 kb on + strand at 2126.031 kb on + strand at 2126.032 kb on - strand at 2126.096 kb on + strand at 2126.096 kb on + strand at 2126.348 kb on + strand, within ABID97_RS10245 at 2126.348 kb on + strand, within ABID97_RS10245 at 2126.381 kb on + strand, within ABID97_RS10245 at 2126.387 kb on + strand, within ABID97_RS10245 at 2126.387 kb on + strand, within ABID97_RS10245 at 2126.388 kb on - strand, within ABID97_RS10245 at 2126.388 kb on - strand, within ABID97_RS10245 at 2126.492 kb on + strand, within ABID97_RS10245 at 2126.492 kb on + strand, within ABID97_RS10245 at 2126.703 kb on - strand, within ABID97_RS10245 at 2127.371 kb on + strand, within ABID97_RS10250 at 2127.386 kb on + strand, within ABID97_RS10250 at 2127.661 kb on + strand at 2128.210 kb on - strand at 2128.400 kb on + strand, within ABID97_RS10260
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 2,125,966 - ABID97_RS10240 0.88 -1.2 2,126,026 - -1.0 2,126,031 + -0.1 2,126,031 + -0.3 2,126,032 - +0.2 2,126,096 + +0.1 2,126,096 + +0.6 2,126,348 + ABID97_RS10245 0.36 -0.3 2,126,348 + ABID97_RS10245 0.36 -0.1 2,126,381 + ABID97_RS10245 0.39 +0.5 2,126,387 + ABID97_RS10245 0.40 -1.0 2,126,387 + ABID97_RS10245 0.40 -0.1 2,126,388 - ABID97_RS10245 0.40 -0.9 2,126,388 - ABID97_RS10245 0.40 +0.7 2,126,492 + ABID97_RS10245 0.52 +0.3 2,126,492 + ABID97_RS10245 0.52 -2.0 2,126,703 - ABID97_RS10245 0.77 +0.2 2,127,371 + ABID97_RS10250 0.65 +0.0 2,127,386 + ABID97_RS10250 0.67 -0.1 2,127,661 + +0.1 2,128,210 - -1.0 2,128,400 + ABID97_RS10260 0.15 -0.9
Or see this region's nucleotide sequence