Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09750

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09735 and ABID97_RS09740 are separated by 82 nucleotidesABID97_RS09740 and ABID97_RS09745 are separated by 1 nucleotidesABID97_RS09745 and ABID97_RS09750 overlap by 4 nucleotidesABID97_RS09750 and ABID97_RS09755 are separated by 14 nucleotidesABID97_RS09755 and ABID97_RS09760 overlap by 1 nucleotides ABID97_RS09735: ABID97_RS09735 - DUF3168 domain-containing protein, at 2,031,225 to 2,031,590 _RS09735 ABID97_RS09740: ABID97_RS09740 - phage tail tube protein, at 2,031,673 to 2,032,323 _RS09740 ABID97_RS09745: ABID97_RS09745 - hypothetical protein, at 2,032,325 to 2,032,552 _RS09745 ABID97_RS09750: ABID97_RS09750 - hypothetical protein, at 2,032,549 to 2,032,911 _RS09750 ABID97_RS09755: ABID97_RS09755 - hypothetical protein, at 2,032,926 to 2,033,192 _RS09755 ABID97_RS09760: ABID97_RS09760 - hypothetical protein, at 2,033,192 to 2,036,677 _RS09760 Position (kb) 2032 2033Strain fitness (log2 ratio) -1 0 1 2at 2031.663 kb on + strandat 2031.868 kb on + strand, within ABID97_RS09740at 2031.868 kb on + strand, within ABID97_RS09740at 2031.869 kb on - strand, within ABID97_RS09740at 2031.938 kb on - strand, within ABID97_RS09740at 2032.106 kb on - strand, within ABID97_RS09740at 2032.636 kb on + strand, within ABID97_RS09750at 2033.190 kb on + strandat 2033.191 kb on - strandat 2033.247 kb on - strandat 2033.354 kb on - strandat 2033.820 kb on - strand, within ABID97_RS09760

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,031,663 + -0.2
2,031,868 + ABID97_RS09740 0.30 -0.0
2,031,868 + ABID97_RS09740 0.30 -0.7
2,031,869 - ABID97_RS09740 0.30 +2.6
2,031,938 - ABID97_RS09740 0.41 -0.7
2,032,106 - ABID97_RS09740 0.67 +0.2
2,032,636 + ABID97_RS09750 0.24 +1.0
2,033,190 + +0.2
2,033,191 - -0.4
2,033,247 - +1.2
2,033,354 - +0.4
2,033,820 - ABID97_RS09760 0.18 +0.2

Or see this region's nucleotide sequence