Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09735 and ABID97_RS09740 are separated by 82 nucleotides ABID97_RS09740 and ABID97_RS09745 are separated by 1 nucleotides ABID97_RS09745 and ABID97_RS09750 overlap by 4 nucleotides ABID97_RS09750 and ABID97_RS09755 are separated by 14 nucleotides ABID97_RS09755 and ABID97_RS09760 overlap by 1 nucleotides
ABID97_RS09735: ABID97_RS09735 - DUF3168 domain-containing protein, at 2,031,225 to 2,031,590
_RS09735
ABID97_RS09740: ABID97_RS09740 - phage tail tube protein, at 2,031,673 to 2,032,323
_RS09740
ABID97_RS09745: ABID97_RS09745 - hypothetical protein, at 2,032,325 to 2,032,552
_RS09745
ABID97_RS09750: ABID97_RS09750 - hypothetical protein, at 2,032,549 to 2,032,911
_RS09750
ABID97_RS09755: ABID97_RS09755 - hypothetical protein, at 2,032,926 to 2,033,192
_RS09755
ABID97_RS09760: ABID97_RS09760 - hypothetical protein, at 2,033,192 to 2,036,677
_RS09760
Position (kb)
2032
2033 Strain fitness (log2 ratio)
-1
0
1
2 at 2031.663 kb on + strand at 2031.868 kb on + strand, within ABID97_RS09740 at 2031.868 kb on + strand, within ABID97_RS09740 at 2031.869 kb on - strand, within ABID97_RS09740 at 2031.938 kb on - strand, within ABID97_RS09740 at 2032.106 kb on - strand, within ABID97_RS09740 at 2032.636 kb on + strand, within ABID97_RS09750 at 2033.190 kb on + strand at 2033.191 kb on - strand at 2033.247 kb on - strand at 2033.354 kb on - strand at 2033.820 kb on - strand, within ABID97_RS09760
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 2,031,663 + -0.2 2,031,868 + ABID97_RS09740 0.30 -0.0 2,031,868 + ABID97_RS09740 0.30 -0.7 2,031,869 - ABID97_RS09740 0.30 +2.6 2,031,938 - ABID97_RS09740 0.41 -0.7 2,032,106 - ABID97_RS09740 0.67 +0.2 2,032,636 + ABID97_RS09750 0.24 +1.0 2,033,190 + +0.2 2,033,191 - -0.4 2,033,247 - +1.2 2,033,354 - +0.4 2,033,820 - ABID97_RS09760 0.18 +0.2
Or see this region's nucleotide sequence