Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06350

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06345 and ABID97_RS06350 are separated by 7 nucleotidesABID97_RS06350 and ABID97_RS06355 overlap by 4 nucleotides ABID97_RS06345: ABID97_RS06345 - 3-deoxy-7-phosphoheptulonate synthase, at 1,340,095 to 1,341,213 _RS06345 ABID97_RS06350: ABID97_RS06350 - cupin domain-containing protein, at 1,341,221 to 1,341,730 _RS06350 ABID97_RS06355: ABID97_RS06355 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 1,341,727 to 1,343,130 _RS06355 Position (kb) 1341 1342Strain fitness (log2 ratio) -3 -2 -1 0 1at 1340.363 kb on - strand, within ABID97_RS06345at 1340.428 kb on + strand, within ABID97_RS06345at 1340.428 kb on + strand, within ABID97_RS06345at 1340.429 kb on - strand, within ABID97_RS06345at 1340.429 kb on - strand, within ABID97_RS06345at 1340.602 kb on + strand, within ABID97_RS06345at 1340.602 kb on + strand, within ABID97_RS06345at 1340.602 kb on + strand, within ABID97_RS06345at 1340.602 kb on + strand, within ABID97_RS06345at 1340.602 kb on + strand, within ABID97_RS06345at 1340.602 kb on + strand, within ABID97_RS06345at 1340.603 kb on - strand, within ABID97_RS06345at 1340.603 kb on - strand, within ABID97_RS06345at 1340.603 kb on - strand, within ABID97_RS06345at 1340.603 kb on - strand, within ABID97_RS06345at 1340.869 kb on + strand, within ABID97_RS06345at 1341.119 kb on - strandat 1341.345 kb on + strand, within ABID97_RS06350at 1341.582 kb on + strand, within ABID97_RS06350at 1341.582 kb on + strand, within ABID97_RS06350at 1341.582 kb on + strand, within ABID97_RS06350at 1341.582 kb on + strand, within ABID97_RS06350at 1341.582 kb on + strand, within ABID97_RS06350at 1341.582 kb on + strand, within ABID97_RS06350at 1341.582 kb on + strand, within ABID97_RS06350at 1341.582 kb on + strand, within ABID97_RS06350at 1341.582 kb on + strand, within ABID97_RS06350at 1341.583 kb on - strand, within ABID97_RS06350at 1341.583 kb on - strand, within ABID97_RS06350at 1341.583 kb on - strand, within ABID97_RS06350at 1341.583 kb on - strand, within ABID97_RS06350at 1341.583 kb on - strand, within ABID97_RS06350at 1341.583 kb on - strand, within ABID97_RS06350at 1341.583 kb on - strand, within ABID97_RS06350at 1341.660 kb on + strand, within ABID97_RS06350at 1341.661 kb on - strand, within ABID97_RS06350at 1341.661 kb on - strand, within ABID97_RS06350at 1342.124 kb on + strand, within ABID97_RS06355at 1342.124 kb on + strand, within ABID97_RS06355at 1342.125 kb on - strand, within ABID97_RS06355at 1342.125 kb on - strand, within ABID97_RS06355at 1342.125 kb on - strand, within ABID97_RS06355at 1342.125 kb on - strand, within ABID97_RS06355at 1342.125 kb on - strand, within ABID97_RS06355at 1342.581 kb on - strand, within ABID97_RS06355at 1342.622 kb on + strand, within ABID97_RS06355at 1342.622 kb on + strand, within ABID97_RS06355

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,340,363 - ABID97_RS06345 0.24 -3.1
1,340,428 + ABID97_RS06345 0.30 -2.1
1,340,428 + ABID97_RS06345 0.30 -0.6
1,340,429 - ABID97_RS06345 0.30 -1.5
1,340,429 - ABID97_RS06345 0.30 -0.6
1,340,602 + ABID97_RS06345 0.45 -2.2
1,340,602 + ABID97_RS06345 0.45 -0.9
1,340,602 + ABID97_RS06345 0.45 -1.5
1,340,602 + ABID97_RS06345 0.45 -1.5
1,340,602 + ABID97_RS06345 0.45 -2.1
1,340,602 + ABID97_RS06345 0.45 -1.6
1,340,603 - ABID97_RS06345 0.45 -1.1
1,340,603 - ABID97_RS06345 0.45 -2.6
1,340,603 - ABID97_RS06345 0.45 -0.6
1,340,603 - ABID97_RS06345 0.45 -0.9
1,340,869 + ABID97_RS06345 0.69 -3.0
1,341,119 - -1.5
1,341,345 + ABID97_RS06350 0.24 +0.0
1,341,582 + ABID97_RS06350 0.71 -0.4
1,341,582 + ABID97_RS06350 0.71 +0.7
1,341,582 + ABID97_RS06350 0.71 -0.6
1,341,582 + ABID97_RS06350 0.71 -0.1
1,341,582 + ABID97_RS06350 0.71 -0.2
1,341,582 + ABID97_RS06350 0.71 -0.3
1,341,582 + ABID97_RS06350 0.71 -0.3
1,341,582 + ABID97_RS06350 0.71 -0.3
1,341,582 + ABID97_RS06350 0.71 -0.6
1,341,583 - ABID97_RS06350 0.71 +0.1
1,341,583 - ABID97_RS06350 0.71 +0.1
1,341,583 - ABID97_RS06350 0.71 -0.1
1,341,583 - ABID97_RS06350 0.71 -0.8
1,341,583 - ABID97_RS06350 0.71 -0.2
1,341,583 - ABID97_RS06350 0.71 -0.2
1,341,583 - ABID97_RS06350 0.71 -0.3
1,341,660 + ABID97_RS06350 0.86 -1.1
1,341,661 - ABID97_RS06350 0.86 -0.2
1,341,661 - ABID97_RS06350 0.86 -0.3
1,342,124 + ABID97_RS06355 0.28 -0.2
1,342,124 + ABID97_RS06355 0.28 -0.9
1,342,125 - ABID97_RS06355 0.28 -0.8
1,342,125 - ABID97_RS06355 0.28 +0.0
1,342,125 - ABID97_RS06355 0.28 -0.9
1,342,125 - ABID97_RS06355 0.28 +0.0
1,342,125 - ABID97_RS06355 0.28 -0.2
1,342,581 - ABID97_RS06355 0.61 -0.5
1,342,622 + ABID97_RS06355 0.64 -0.4
1,342,622 + ABID97_RS06355 0.64 +0.5

Or see this region's nucleotide sequence