Strain Fitness in Pseudomonas putida KT2440 around PP_5375

Experiment: Glucose (C) (20mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) (20mM)
6,125,991	+		PP_5374	0.46	-0.1
6,125,991	+		PP_5374	0.46	-0.0
6,125,991	+		PP_5374	0.46	+0.6
6,125,991	+		PP_5374	0.46	+0.4
6,125,991	+		PP_5374	0.46	+1.0
6,125,992	-		PP_5374	0.46	+0.6
6,125,992	-		PP_5374	0.46	+0.0
6,125,992	-		PP_5374	0.46	-0.1
6,125,992	-		PP_5374	0.46	+0.1
6,125,992	-		PP_5374	0.46	-0.1
6,126,046	+		PP_5374	0.49	+1.0
6,126,046	+		PP_5374	0.49	+0.4
6,126,046	+		PP_5374	0.49	+0.9
6,126,082	+		PP_5374	0.51	-0.2
6,126,082	+		PP_5374	0.51	-0.4
6,126,083	-		PP_5374	0.51	+0.4
6,126,083	-		PP_5374	0.51	-0.1
6,126,095	+		PP_5374	0.52	-0.8
6,126,095	+		PP_5374	0.52	-0.3
6,126,096	-		PP_5374	0.52	+0.1
6,126,096	-				+1.4
6,126,096	-		PP_5374	0.52	+0.5
6,126,163	+		PP_5374	0.56	-1.6
6,126,163	+		PP_5374	0.56	+0.3
6,126,164	-		PP_5374	0.56	-0.7
6,126,164	-		PP_5374	0.56	+0.2
6,126,394	+		PP_5374	0.70	-0.0
6,126,394	+		PP_5374	0.70	-0.2
6,126,394	+		PP_5374	0.70	+1.0
6,126,394	+		PP_5374	0.70	+0.7
6,126,395	-		PP_5374	0.70	+0.3
6,126,395	-		PP_5374	0.70	+0.3
6,126,395	-		PP_5374	0.70	+0.0
6,126,411	-		PP_5374	0.71	-0.5
6,126,411	-		PP_5374	0.71	+0.3
6,126,411	-		PP_5374	0.71	-0.2
6,126,411	-		PP_5374	0.71	+0.8
6,126,510	+		PP_5374	0.77	-0.1
6,126,510	+		PP_5374	0.77	+0.3
6,126,510	+		PP_5374	0.77	+0.3
6,126,526	+		PP_5374	0.77	-1.0
6,126,526	+		PP_5374	0.77	-0.0
6,126,526	+		PP_5374	0.77	-0.2
6,126,527	-		PP_5374	0.78	-1.2
6,126,527	-		PP_5374	0.78	+0.1
6,126,527	-		PP_5374	0.78	+0.2
6,126,567	+		PP_5374	0.80	+1.3
6,126,568	-		PP_5374	0.80	+1.0
6,126,568	-		PP_5374	0.80	+0.8
6,126,568	-		PP_5374	0.80	-0.7
6,126,639	+		PP_5374	0.84	-0.2
6,126,639	+		PP_5374	0.84	-0.2
6,126,639	+		PP_5374	0.84	+0.5
6,126,639	+		PP_5374	0.84	-0.7
6,126,639	+		PP_5374	0.84	-0.5
6,126,639	+		PP_5374	0.84	-0.7
6,126,639	+		PP_5374	0.84	+0.7
6,126,640	-		PP_5374	0.84	-1.1
6,126,640	-		PP_5374	0.84	-0.3
6,126,640	-		PP_5374	0.84	+0.3
6,126,640	-		PP_5374	0.84	-0.2
6,126,640	-		PP_5374	0.84	-0.5
6,126,640	-		PP_5374	0.84	-0.3
6,126,640	-		PP_5374	0.84	+0.7
6,126,640	-		PP_5374	0.84	+0.1
6,126,642	-		PP_5374	0.84	+0.9
6,126,642	-		PP_5374	0.84	-0.8
6,126,642	-		PP_5374	0.84	-0.4
6,126,736	-		PP_5374	0.90	+0.0
6,126,736	-		PP_5374	0.90	-0.1
6,126,739	+				-0.7
6,126,739	+				-0.2
6,126,739	+				+1.0
6,126,739	+				+0.2
6,126,740	-				+0.2
6,126,740	-				-0.8
6,126,740	-				-0.5
6,126,790	-				+0.3
6,126,790	-				+0.4
6,126,813	+				+0.6
6,126,813	+				-1.0
6,126,813	+				-0.8
6,126,814	-				-0.2
6,126,814	-				-0.3
6,126,814	-				-0.4
6,126,814	-				+0.0
6,126,814	-				-0.1
6,126,814	-				-1.4
6,126,814	-				+0.4
6,126,814	-				-0.2
6,126,815	+				-1.2
6,126,879	+				-0.6
6,126,880	-				-0.2
6,126,880	-				+0.7
6,126,880	-				-0.0
6,126,908	-				-0.7
6,126,913	-				-0.3
6,126,913	-				+1.2
6,126,978	-				-0.4
6,127,090	+		PP_5375	0.13	-1.0
6,127,090	+		PP_5375	0.13	-0.4
6,127,091	-		PP_5375	0.13	-0.5
6,127,091	-		PP_5375	0.13	-0.5
6,127,091	-		PP_5375	0.13	-0.9
6,127,197	+		PP_5375	0.24	-0.5
6,127,198	-		PP_5375	0.24	+0.6
6,127,202	+		PP_5375	0.25	+0.2
6,127,202	+		PP_5375	0.25	-0.6
6,127,202	+		PP_5375	0.25	-0.4
6,127,203	-		PP_5375	0.25	+0.3
6,127,276	+		PP_5375	0.33	-0.4
6,127,276	+				-1.2
6,127,277	-		PP_5375	0.33	-0.1
6,127,314	+		PP_5375	0.37	-0.5
6,127,314	+		PP_5375	0.37	+0.3
6,127,314	+		PP_5375	0.37	-0.7
6,127,315	-		PP_5375	0.37	-0.6
6,127,315	-		PP_5375	0.37	-0.1
6,127,446	-		PP_5375	0.52	-1.2
6,127,446	-		PP_5375	0.52	-1.2
6,127,446	-		PP_5375	0.52	-0.1
6,127,446	-		PP_5375	0.52	-0.5
6,127,475	+		PP_5375	0.55	+0.5
6,127,621	+		PP_5375	0.71	+0.2
6,127,621	+		PP_5375	0.71	-0.3
6,127,621	+		PP_5375	0.71	-0.6
6,127,621	+		PP_5375	0.71	+0.0
6,127,621	+		PP_5375	0.71	+1.2
6,127,621	+		PP_5375	0.71	+0.2
6,127,622	-		PP_5375	0.71	-0.5
6,127,622	-		PP_5375	0.71	+1.2
6,127,622	-		PP_5375	0.71	+0.4
6,127,674	-		PP_5375	0.77	-0.7
6,127,674	-		PP_5375	0.77	+0.3
6,127,677	-		PP_5375	0.77	-0.3
6,127,707	+		PP_5375	0.80	+0.1
6,127,717	-		PP_5375	0.82	-0.8
6,127,727	-		PP_5375	0.83	-0.6
6,127,742	+		PP_5375	0.84	+0.1
6,127,742	+		PP_5375	0.84	-1.0
6,127,770	+		PP_5375	0.87	+0.3
6,127,770	+		PP_5375	0.87	+0.7
6,127,770	+		PP_5375	0.87	-1.1
6,127,907	+				+0.4
6,127,910	+				-0.7
6,127,981	-				-1.6
6,127,982	+				+0.1
6,127,982	+				+0.1
6,127,982	+				+0.3
6,128,019	-				+0.3
6,128,025	+				+1.4
6,128,040	+				+1.4
6,128,040	+				+0.9
6,128,040	+				-0.0
6,128,096	+				-0.2
6,128,097	-				-0.5
6,128,228	+				-0.2
6,128,228	+				+0.9
6,128,228	+				-1.2
6,128,229	-				+0.0
6,128,229	-				+0.1
6,128,269	+				+0.0
6,128,270	-				+0.2
6,128,369	+				+0.7
6,128,417	-				-0.2
6,128,424	-				-0.1
6,128,425	-				+0.6
6,128,536	+				+0.1
6,128,537	-				+0.3
6,128,615	+				+0.6
6,128,615	+				+0.3
6,128,616	-				-0.5
6,128,616	-				-0.1
6,128,666	+				-0.4
6,128,681	-				-0.1
6,128,736	-				+0.6
6,128,736	-				+1.4
6,128,772	+				-1.1
6,128,772	+				+0.0
6,128,834	+				+0.5