Strain Fitness in Pseudomonas putida KT2440 around PP_4613

Experiment: Glucose (C) (20mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4612 and PP_4613 are separated by 94 nucleotidesPP_4613 and PP_5700 are separated by 178 nucleotidesPP_5700 and PP_4614 are separated by 23 nucleotidesPP_4614 and PP_4615 are separated by 3 nucleotides PP_4612: PP_4612 - putative FecR protein, at 5,233,646 to 5,234,572 _4612 PP_4613: PP_4613 - outer membrane ferric citrate porin, at 5,234,667 to 5,236,991 _4613 PP_5700: PP_5700 - conserved protein of unknown function, at 5,237,170 to 5,237,517 _5700 PP_4614: PP_4614 - conserved protein of unknown function, at 5,237,541 to 5,237,927 _4614 PP_4615: PP_4615 - conserved membrane protein of unknown function, at 5,237,931 to 5,238,401 _4615 Position (kb) 5234 5235 5236 5237Strain fitness (log2 ratio) -1 0 1 2at 5234.145 kb on + strand, within PP_4612at 5234.145 kb on + strand, within PP_4612at 5234.145 kb on + strand, within PP_4612at 5234.145 kb on + strandat 5234.145 kb on + strand, within PP_4612at 5234.145 kb on + strand, within PP_4612at 5234.146 kb on - strand, within PP_4612at 5234.149 kb on + strand, within PP_4612at 5234.149 kb on + strand, within PP_4612at 5234.149 kb on + strand, within PP_4612at 5234.150 kb on - strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.164 kb on - strand, within PP_4612at 5234.164 kb on - strand, within PP_4612at 5234.164 kb on - strand, within PP_4612at 5234.164 kb on - strand, within PP_4612at 5234.164 kb on - strand, within PP_4612at 5234.164 kb on - strand, within PP_4612at 5234.168 kb on + strand, within PP_4612at 5234.168 kb on + strand, within PP_4612at 5234.169 kb on - strand, within PP_4612at 5234.169 kb on - strand, within PP_4612at 5234.169 kb on - strand, within PP_4612at 5234.193 kb on + strand, within PP_4612at 5234.210 kb on + strand, within PP_4612at 5234.211 kb on - strand, within PP_4612at 5234.211 kb on - strand, within PP_4612at 5234.212 kb on + strand, within PP_4612at 5234.213 kb on - strand, within PP_4612at 5234.463 kb on - strand, within PP_4612at 5234.571 kb on - strandat 5234.571 kb on - strandat 5234.760 kb on + strandat 5234.760 kb on + strandat 5234.760 kb on + strandat 5234.760 kb on + strandat 5234.760 kb on + strandat 5234.760 kb on + strandat 5234.761 kb on - strandat 5234.761 kb on - strandat 5235.061 kb on + strand, within PP_4613at 5235.061 kb on + strand, within PP_4613at 5235.062 kb on - strand, within PP_4613at 5235.062 kb on - strand, within PP_4613at 5235.089 kb on - strand, within PP_4613at 5235.122 kb on + strand, within PP_4613at 5235.123 kb on - strand, within PP_4613at 5235.123 kb on - strand, within PP_4613at 5235.123 kb on - strand, within PP_4613at 5235.291 kb on + strandat 5235.378 kb on + strand, within PP_4613at 5235.561 kb on + strand, within PP_4613at 5235.678 kb on + strand, within PP_4613at 5235.678 kb on + strand, within PP_4613at 5235.679 kb on - strand, within PP_4613at 5235.679 kb on - strand, within PP_4613at 5235.681 kb on + strand, within PP_4613at 5235.681 kb on + strand, within PP_4613at 5235.681 kb on + strand, within PP_4613at 5235.682 kb on - strand, within PP_4613at 5235.682 kb on - strand, within PP_4613at 5235.682 kb on - strand, within PP_4613at 5235.682 kb on - strand, within PP_4613at 5235.807 kb on + strand, within PP_4613at 5235.870 kb on + strand, within PP_4613at 5235.912 kb on + strand, within PP_4613at 5235.913 kb on - strand, within PP_4613at 5235.913 kb on - strand, within PP_4613at 5236.227 kb on + strand, within PP_4613at 5236.227 kb on + strand, within PP_4613at 5236.227 kb on + strand, within PP_4613at 5236.227 kb on + strand, within PP_4613at 5236.227 kb on + strand, within PP_4613at 5236.227 kb on + strand, within PP_4613at 5236.228 kb on - strand, within PP_4613at 5236.260 kb on + strand, within PP_4613at 5236.260 kb on + strand, within PP_4613at 5236.260 kb on + strand, within PP_4613at 5236.260 kb on + strand, within PP_4613at 5236.260 kb on + strand, within PP_4613at 5236.260 kb on + strand, within PP_4613at 5236.261 kb on - strand, within PP_4613at 5236.261 kb on - strand, within PP_4613at 5236.261 kb on - strand, within PP_4613at 5236.261 kb on - strand, within PP_4613at 5236.261 kb on - strand, within PP_4613at 5236.323 kb on + strand, within PP_4613at 5236.539 kb on + strand, within PP_4613at 5236.540 kb on - strand, within PP_4613at 5236.593 kb on + strand, within PP_4613at 5236.593 kb on + strand, within PP_4613at 5236.593 kb on + strand, within PP_4613at 5236.594 kb on - strand, within PP_4613at 5236.594 kb on - strand, within PP_4613at 5236.594 kb on - strand, within PP_4613at 5236.743 kb on + strand, within PP_4613at 5236.743 kb on + strand, within PP_4613at 5236.806 kb on + strandat 5236.807 kb on - strandat 5236.807 kb on - strandat 5236.807 kb on - strandat 5236.902 kb on + strandat 5236.905 kb on + strandat 5236.905 kb on + strandat 5236.905 kb on + strandat 5236.906 kb on - strandat 5236.918 kb on - strandat 5236.918 kb on - strandat 5236.918 kb on - strandat 5236.918 kb on - strandat 5236.941 kb on + strandat 5236.941 kb on + strandat 5236.941 kb on + strandat 5236.942 kb on - strandat 5236.942 kb on - strandat 5236.958 kb on + strandat 5236.958 kb on + strandat 5236.958 kb on + strandat 5236.958 kb on + strandat 5236.959 kb on - strandat 5236.959 kb on - strandat 5236.959 kb on - strandat 5236.965 kb on + strandat 5236.966 kb on - strandat 5237.017 kb on + strandat 5237.018 kb on - strandat 5237.088 kb on - strandat 5237.932 kb on + strandat 5237.932 kb on + strandat 5237.933 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C) (20mM)
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5,234,145 + PP_4612 0.54 +1.5
5,234,145 + PP_4612 0.54 +0.0
5,234,145 + PP_4612 0.54 +0.9
5,234,145 + +1.1
5,234,145 + PP_4612 0.54 -0.7
5,234,145 + PP_4612 0.54 -0.1
5,234,146 - PP_4612 0.54 +1.1
5,234,149 + PP_4612 0.54 -1.2
5,234,149 + PP_4612 0.54 -0.9
5,234,149 + PP_4612 0.54 +0.0
5,234,150 - PP_4612 0.54 -0.2
5,234,163 + PP_4612 0.56 +0.7
5,234,163 + PP_4612 0.56 -0.2
5,234,163 + PP_4612 0.56 -0.5
5,234,163 + PP_4612 0.56 -0.4
5,234,163 + PP_4612 0.56 +0.7
5,234,163 + PP_4612 0.56 -0.7
5,234,163 + PP_4612 0.56 -1.1
5,234,163 + PP_4612 0.56 -0.4
5,234,163 + PP_4612 0.56 -1.0
5,234,164 - PP_4612 0.56 -0.6
5,234,164 - PP_4612 0.56 +0.6
5,234,164 - PP_4612 0.56 -0.2
5,234,164 - PP_4612 0.56 +0.3
5,234,164 - PP_4612 0.56 +0.2
5,234,164 - PP_4612 0.56 +0.4
5,234,168 + PP_4612 0.56 +0.6
5,234,168 + PP_4612 0.56 +0.6
5,234,169 - PP_4612 0.56 -0.5
5,234,169 - PP_4612 0.56 +0.5
5,234,169 - PP_4612 0.56 +0.5
5,234,193 + PP_4612 0.59 -0.9
5,234,210 + PP_4612 0.61 +0.2
5,234,211 - PP_4612 0.61 -1.0
5,234,211 - PP_4612 0.61 +0.8
5,234,212 + PP_4612 0.61 -0.4
5,234,213 - PP_4612 0.61 +2.1
5,234,463 - PP_4612 0.88 +2.3
5,234,571 - +0.0
5,234,571 - +0.6
5,234,760 + +0.1
5,234,760 + +0.9
5,234,760 + +0.1
5,234,760 + -0.2
5,234,760 + -0.2
5,234,760 + +0.4
5,234,761 - +0.3
5,234,761 - -0.2
5,235,061 + PP_4613 0.17 +0.4
5,235,061 + PP_4613 0.17 -0.2
5,235,062 - PP_4613 0.17 +0.1
5,235,062 - PP_4613 0.17 -0.1
5,235,089 - PP_4613 0.18 -0.4
5,235,122 + PP_4613 0.20 +1.5
5,235,123 - PP_4613 0.20 -0.2
5,235,123 - PP_4613 0.20 -0.0
5,235,123 - PP_4613 0.20 -0.3
5,235,291 + +1.1
5,235,378 + PP_4613 0.31 +1.4
5,235,561 + PP_4613 0.38 +1.1
5,235,678 + PP_4613 0.43 -0.4
5,235,678 + PP_4613 0.43 +0.4
5,235,679 - PP_4613 0.44 +0.2
5,235,679 - PP_4613 0.44 +0.0
5,235,681 + PP_4613 0.44 +0.1
5,235,681 + PP_4613 0.44 -0.9
5,235,681 + PP_4613 0.44 -0.6
5,235,682 - PP_4613 0.44 -0.3
5,235,682 - PP_4613 0.44 -0.2
5,235,682 - PP_4613 0.44 +0.9
5,235,682 - PP_4613 0.44 +1.1
5,235,807 + PP_4613 0.49 +0.6
5,235,870 + PP_4613 0.52 -1.4
5,235,912 + PP_4613 0.54 -0.0
5,235,913 - PP_4613 0.54 +0.7
5,235,913 - PP_4613 0.54 +0.6
5,236,227 + PP_4613 0.67 +0.6
5,236,227 + PP_4613 0.67 -1.2
5,236,227 + PP_4613 0.67 +1.3
5,236,227 + PP_4613 0.67 +0.4
5,236,227 + PP_4613 0.67 +0.2
5,236,227 + PP_4613 0.67 -1.2
5,236,228 - PP_4613 0.67 -0.0
5,236,260 + PP_4613 0.69 +1.4
5,236,260 + PP_4613 0.69 +0.8
5,236,260 + PP_4613 0.69 +0.1
5,236,260 + PP_4613 0.69 +0.4
5,236,260 + PP_4613 0.69 +0.0
5,236,260 + PP_4613 0.69 +0.7
5,236,261 - PP_4613 0.69 -0.4
5,236,261 - PP_4613 0.69 -0.0
5,236,261 - PP_4613 0.69 -0.4
5,236,261 - PP_4613 0.69 -0.6
5,236,261 - PP_4613 0.69 +1.1
5,236,323 + PP_4613 0.71 -0.6
5,236,539 + PP_4613 0.81 +0.5
5,236,540 - PP_4613 0.81 +0.6
5,236,593 + PP_4613 0.83 -0.3
5,236,593 + PP_4613 0.83 -0.2
5,236,593 + PP_4613 0.83 +0.1
5,236,594 - PP_4613 0.83 +0.4
5,236,594 - PP_4613 0.83 -0.2
5,236,594 - PP_4613 0.83 -0.1
5,236,743 + PP_4613 0.89 +0.5
5,236,743 + PP_4613 0.89 -0.5
5,236,806 + -0.0
5,236,807 - -0.5
5,236,807 - -0.0
5,236,807 - +1.5
5,236,902 + -0.3
5,236,905 + -0.3
5,236,905 + -1.0
5,236,905 + -0.1
5,236,906 - -0.5
5,236,918 - +0.1
5,236,918 - +1.3
5,236,918 - +0.9
5,236,918 - +0.1
5,236,941 + -0.1
5,236,941 + +0.3
5,236,941 + +0.4
5,236,942 - +0.4
5,236,942 - +0.2
5,236,958 + +0.2
5,236,958 + -0.7
5,236,958 + -0.2
5,236,958 + -0.5
5,236,959 - +0.2
5,236,959 - -1.2
5,236,959 - +0.9
5,236,965 + -0.3
5,236,966 - -0.9
5,237,017 + -0.4
5,237,018 - +0.1
5,237,088 - +0.4
5,237,932 + -0.4
5,237,932 + +2.1
5,237,933 - -0.1

Or see this region's nucleotide sequence