Strain Fitness in Pseudomonas segetis P6 around MPMX49_01654

Experiment: Fluoride 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fluoride 6 mM
1,756,789	+		MPMX49_01653	0.46	+0.1
1,756,790	-		MPMX49_01653	0.47	+0.3
1,756,794	-		MPMX49_01653	0.47	+0.4
1,756,950	+		MPMX49_01653	0.58	-1.4
1,756,950	+		MPMX49_01653	0.58	-2.2
1,757,090	-		MPMX49_01653	0.69	+1.8
1,757,226	+		MPMX49_01653	0.79	-0.0
1,757,226	+		MPMX49_01653	0.79	+0.0
1,757,227	-		MPMX49_01653	0.79	-0.4
1,757,294	-		MPMX49_01653	0.84	+0.1
1,757,368	-		MPMX49_01653	0.89	-0.2
1,757,379	-		MPMX49_01653	0.90	-0.3
1,757,414	+				+0.1
1,757,415	-				-1.1
1,757,415	-				-0.0
1,757,415	-				+0.4
1,757,514	+				-0.4
1,757,517	+				-0.4
1,757,553	+				-0.0
1,757,553	+				-0.4
1,757,553	+				-0.1
1,757,553	+				-2.1
1,757,553	+				+0.5
1,757,553	+				-0.5
1,757,554	-				-0.1
1,757,554	-				+0.5
1,757,554	-				+0.0
1,757,655	+				-1.8
1,757,682	+				+1.0
1,757,722	+				-0.6
1,758,010	-		MPMX49_01654	0.12	+0.2
1,758,311	+		MPMX49_01654	0.25	+1.0
1,758,315	+		MPMX49_01654	0.26	+0.7
1,758,315	+		MPMX49_01654	0.26	-0.6
1,758,315	+		MPMX49_01654	0.26	+1.1
1,758,316	-		MPMX49_01654	0.26	-0.1
1,758,316	-		MPMX49_01654	0.26	+1.3
1,758,316	-		MPMX49_01654	0.26	-1.1
1,758,316	-		MPMX49_01654	0.26	+0.1
1,758,453	+		MPMX49_01654	0.32	-0.3
1,758,453	+		MPMX49_01654	0.32	+0.8
1,758,453	+		MPMX49_01654	0.32	+0.8
1,758,454	-		MPMX49_01654	0.32	-0.2
1,758,515	+		MPMX49_01654	0.35	-0.1
1,758,536	+		MPMX49_01654	0.35	+0.5
1,758,536	+		MPMX49_01654	0.35	-1.0
1,758,536	+		MPMX49_01654	0.35	+0.8
1,758,536	+		MPMX49_01654	0.35	+0.6
1,758,536	+		MPMX49_01654	0.35	+1.4
1,758,536	+		MPMX49_01654	0.35	+0.8
1,758,536	+		MPMX49_01654	0.35	+0.4
1,758,536	+		MPMX49_01654	0.35	+0.6
1,758,537	-		MPMX49_01654	0.36	+1.4
1,758,537	-		MPMX49_01654	0.36	-0.1
1,758,537	-		MPMX49_01654	0.36	+0.6
1,758,537	-		MPMX49_01654	0.36	+0.9
1,758,537	-		MPMX49_01654	0.36	+1.0
1,758,537	-		MPMX49_01654	0.36	+1.0
1,758,541	-		MPMX49_01654	0.36	+0.3
1,758,591	+		MPMX49_01654	0.38	+1.8
1,758,591	+		MPMX49_01654	0.38	+0.4
1,758,592	-		MPMX49_01654	0.38	+0.2
1,758,592	-		MPMX49_01654	0.38	+0.1
1,758,639	+		MPMX49_01654	0.40	+0.6
1,758,640	-		MPMX49_01654	0.40	-0.3
1,758,699	+		MPMX49_01654	0.43	+1.1
1,758,700	-		MPMX49_01654	0.43	+1.1
1,758,700	-		MPMX49_01654	0.43	+0.1
1,758,751	+		MPMX49_01654	0.45	+0.5
1,758,752	-		MPMX49_01654	0.45	+0.8
1,758,752	-		MPMX49_01654	0.45	+0.6
1,758,752	-		MPMX49_01654	0.45	+0.8
1,758,788	+		MPMX49_01654	0.47	+0.2
1,758,788	+		MPMX49_01654	0.47	+0.5
1,758,788	+		MPMX49_01654	0.47	+0.6
1,758,789	-		MPMX49_01654	0.47	+1.1
1,758,789	-		MPMX49_01654	0.47	+0.9
1,758,789	-		MPMX49_01654	0.47	+0.8
1,758,840	+		MPMX49_01654	0.49	+3.4
1,758,840	+		MPMX49_01654	0.49	-0.6
1,758,842	+		MPMX49_01654	0.49	-0.3
1,758,842	+		MPMX49_01654	0.49	+1.7
1,758,876	+		MPMX49_01654	0.51	+1.9
1,758,987	+		MPMX49_01654	0.56	-0.1
1,758,987	+		MPMX49_01654	0.56	-0.1
1,758,988	-		MPMX49_01654	0.56	-0.3
1,758,988	-		MPMX49_01654	0.56	+0.6
1,758,988	-		MPMX49_01654	0.56	+0.0
1,758,988	-		MPMX49_01654	0.56	+0.2
1,758,988	-		MPMX49_01654	0.56	+0.4
1,758,988	-		MPMX49_01654	0.56	+0.7
1,759,060	+		MPMX49_01654	0.59	+0.5
1,759,060	+		MPMX49_01654	0.59	+0.4
1,759,060	+		MPMX49_01654	0.59	-0.3
1,759,060	+		MPMX49_01654	0.59	+0.4
1,759,060	+		MPMX49_01654	0.59	+1.4
1,759,060	+		MPMX49_01654	0.59	+0.4
1,759,064	+		MPMX49_01654	0.59	+0.8
1,759,064	+		MPMX49_01654	0.59	+0.6
1,759,064	+		MPMX49_01654	0.59	+0.0
1,759,064	+		MPMX49_01654	0.59	+0.4
1,759,100	-		MPMX49_01654	0.61	+1.0
1,759,100	-		MPMX49_01654	0.61	+0.8
1,759,126	-		MPMX49_01654	0.62	+0.6
1,759,213	-		MPMX49_01654	0.66	+0.4
1,759,213	-		MPMX49_01654	0.66	+0.4
1,759,315	+		MPMX49_01654	0.70	-0.6
1,759,315	+		MPMX49_01654	0.70	+1.0
1,759,316	-		MPMX49_01654	0.70	+0.4
1,759,435	+		MPMX49_01654	0.75	+0.1
1,759,436	-		MPMX49_01654	0.76	+2.0
1,759,490	+		MPMX49_01654	0.78	-3.5
1,759,491	-		MPMX49_01654	0.78	-0.2
1,759,491	-		MPMX49_01654	0.78	+0.4
1,759,491	-		MPMX49_01654	0.78	-0.3
1,759,535	+		MPMX49_01654	0.80	-0.7
1,759,617	+		MPMX49_01654	0.84	-1.4
1,759,618	-		MPMX49_01654	0.84	+0.6
1,759,618	-		MPMX49_01654	0.84	-2.0
1,759,767	+				-0.7
1,759,767	+				-0.2
1,759,768	-				-0.2
1,759,768	-				+0.0
1,759,804	+				-1.2
1,759,874	+				+1.0
1,759,874	+				-0.2
1,759,991	+				+1.4
1,759,991	+				+0.4
1,759,991	+				+0.2
1,759,991	+				-0.4
1,759,992	-				-0.2
1,759,992	-				+0.2
1,759,992	-				+0.1
1,759,992	-				-0.4
1,759,995	+				-0.5
1,759,996	-				-0.3
1,760,002	+				-0.2
1,760,014	+				-0.0
1,760,014	+				-0.2
1,760,014	+				-0.0
1,760,014	+				+0.0
1,760,014	+				-0.5
1,760,014	+				+0.7
1,760,015	-				-2.3
1,760,015	-				+0.0
1,760,015	-				+1.4
1,760,022	-				+0.3
1,760,076	+		MPMX49_01655	0.10	+0.1
1,760,086	+		MPMX49_01655	0.11	+0.4
1,760,094	+		MPMX49_01655	0.12	-1.1
1,760,096	+		MPMX49_01655	0.13	-0.2
1,760,096	+		MPMX49_01655	0.13	+0.2
1,760,096	+		MPMX49_01655	0.13	-0.8
1,760,096	+		MPMX49_01655	0.13	-1.0
1,760,097	-		MPMX49_01655	0.13	-0.0
1,760,112	+		MPMX49_01655	0.14	+1.4
1,760,194	-		MPMX49_01655	0.24	-1.1
1,760,196	+		MPMX49_01655	0.25	-0.4
1,760,197	-		MPMX49_01655	0.25	-0.5
1,760,197	-		MPMX49_01655	0.25	-0.4
1,760,197	-		MPMX49_01655	0.25	+0.8
1,760,307	+		MPMX49_01655	0.38	+0.2
1,760,308	-		MPMX49_01655	0.38	-1.2
1,760,308	-		MPMX49_01655	0.38	-0.2
1,760,308	-		MPMX49_01655	0.38	+1.0
1,760,308	-		MPMX49_01655	0.38	+0.6
1,760,431	+		MPMX49_01655	0.53	-0.7
1,760,431	+		MPMX49_01655	0.53	+0.9
1,760,431	+		MPMX49_01655	0.53	-0.8
1,760,432	-		MPMX49_01655	0.53	-0.2
1,760,435	+		MPMX49_01655	0.53	-0.1
1,760,435	+		MPMX49_01655	0.53	-0.4
1,760,436	-		MPMX49_01655	0.53	-0.4
1,760,831	-				+1.5
1,760,841	+				-0.2
1,760,842	-				-0.4
1,760,869	+				+0.6
1,760,869	+				-2.2
1,760,929	+				+2.7
1,760,944	+				-0.1
1,760,944	+				+0.1
1,760,945	-				-0.4