Strain Fitness in Serratia liquefaciens MT49 around IAI46_24330

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24325 and IAI46_24330 are separated by 168 nucleotidesIAI46_24330 and IAI46_24335 are separated by 116 nucleotidesIAI46_24335 and IAI46_24340 are separated by 21 nucleotides IAI46_24325: IAI46_24325 - ketol-acid reductoisomerase, at 5,192,541 to 5,194,016 _24325 IAI46_24330: IAI46_24330 - HTH-type transcriptional activator IlvY, at 5,194,185 to 5,195,084 _24330 IAI46_24335: IAI46_24335 - DUF2461 domain-containing protein, at 5,195,201 to 5,195,902 _24335 IAI46_24340: IAI46_24340 - threonine ammonia-lyase, biosynthetic, at 5,195,924 to 5,197,468 _24340 Position (kb) 5194 5195 5196Strain fitness (log2 ratio) -2 -1 0 1at 5193.271 kb on + strand, within IAI46_24325at 5193.272 kb on - strand, within IAI46_24325at 5193.284 kb on + strand, within IAI46_24325at 5193.575 kb on + strand, within IAI46_24325at 5193.584 kb on + strand, within IAI46_24325at 5193.584 kb on + strand, within IAI46_24325at 5193.585 kb on - strand, within IAI46_24325at 5193.585 kb on - strand, within IAI46_24325at 5193.589 kb on - strand, within IAI46_24325at 5193.628 kb on + strand, within IAI46_24325at 5193.629 kb on - strand, within IAI46_24325at 5193.629 kb on - strand, within IAI46_24325at 5193.675 kb on + strand, within IAI46_24325at 5193.742 kb on + strand, within IAI46_24325at 5193.742 kb on + strand, within IAI46_24325at 5193.743 kb on - strand, within IAI46_24325at 5193.743 kb on - strand, within IAI46_24325at 5193.755 kb on + strand, within IAI46_24325at 5193.756 kb on - strand, within IAI46_24325at 5193.803 kb on + strand, within IAI46_24325at 5193.812 kb on + strand, within IAI46_24325at 5193.823 kb on + strand, within IAI46_24325at 5193.824 kb on - strand, within IAI46_24325at 5193.824 kb on - strand, within IAI46_24325at 5193.824 kb on - strand, within IAI46_24325at 5193.963 kb on - strandat 5194.006 kb on + strandat 5194.006 kb on + strandat 5194.007 kb on - strandat 5194.010 kb on + strandat 5194.011 kb on - strandat 5194.011 kb on - strandat 5194.022 kb on + strandat 5194.022 kb on + strandat 5194.023 kb on - strandat 5194.023 kb on - strandat 5194.023 kb on - strandat 5194.023 kb on - strandat 5194.031 kb on + strandat 5194.032 kb on - strandat 5194.032 kb on - strandat 5194.053 kb on - strandat 5194.099 kb on + strandat 5194.099 kb on + strandat 5194.099 kb on + strandat 5194.100 kb on - strandat 5194.100 kb on - strandat 5194.100 kb on - strandat 5194.100 kb on - strandat 5194.100 kb on - strandat 5194.100 kb on - strandat 5194.100 kb on - strandat 5194.101 kb on + strandat 5194.101 kb on + strandat 5194.101 kb on + strandat 5194.130 kb on + strandat 5194.178 kb on + strandat 5194.178 kb on + strandat 5194.179 kb on - strandat 5194.179 kb on - strandat 5194.184 kb on + strandat 5194.185 kb on - strandat 5194.185 kb on - strandat 5194.201 kb on + strandat 5194.201 kb on + strandat 5194.376 kb on - strand, within IAI46_24330at 5194.407 kb on + strand, within IAI46_24330at 5194.651 kb on + strand, within IAI46_24330at 5194.652 kb on - strand, within IAI46_24330at 5194.685 kb on - strand, within IAI46_24330at 5194.763 kb on + strand, within IAI46_24330at 5194.949 kb on + strand, within IAI46_24330at 5194.950 kb on - strand, within IAI46_24330at 5194.950 kb on - strand, within IAI46_24330at 5194.966 kb on + strand, within IAI46_24330at 5194.973 kb on + strand, within IAI46_24330at 5194.973 kb on + strand, within IAI46_24330at 5194.973 kb on + strand, within IAI46_24330at 5194.974 kb on - strand, within IAI46_24330at 5194.979 kb on + strand, within IAI46_24330at 5195.063 kb on - strandat 5195.063 kb on - strandat 5195.066 kb on - strandat 5195.083 kb on - strandat 5195.102 kb on + strandat 5195.128 kb on + strandat 5195.134 kb on + strandat 5195.135 kb on - strandat 5195.159 kb on + strandat 5195.159 kb on + strandat 5195.160 kb on - strandat 5195.160 kb on - strandat 5195.160 kb on - strandat 5195.198 kb on + strandat 5195.198 kb on + strandat 5195.203 kb on - strandat 5195.203 kb on - strandat 5195.237 kb on + strandat 5195.257 kb on - strandat 5195.316 kb on - strand, within IAI46_24335at 5195.367 kb on + strand, within IAI46_24335at 5195.368 kb on - strand, within IAI46_24335at 5195.415 kb on + strand, within IAI46_24335at 5195.416 kb on - strand, within IAI46_24335at 5195.494 kb on + strand, within IAI46_24335at 5195.532 kb on + strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.535 kb on + strand, within IAI46_24335at 5195.535 kb on + strand, within IAI46_24335at 5195.547 kb on + strand, within IAI46_24335at 5195.581 kb on - strand, within IAI46_24335at 5195.653 kb on + strand, within IAI46_24335at 5195.654 kb on - strand, within IAI46_24335at 5195.682 kb on - strand, within IAI46_24335at 5195.684 kb on - strand, within IAI46_24335at 5195.684 kb on - strand, within IAI46_24335at 5195.699 kb on - strand, within IAI46_24335at 5195.800 kb on - strand, within IAI46_24335at 5196.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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5,193,271 + IAI46_24325 0.49 +1.2
5,193,272 - IAI46_24325 0.50 -0.1
5,193,284 + IAI46_24325 0.50 +0.6
5,193,575 + IAI46_24325 0.70 +0.1
5,193,584 + IAI46_24325 0.71 +0.5
5,193,584 + IAI46_24325 0.71 -1.3
5,193,585 - IAI46_24325 0.71 -0.3
5,193,585 - IAI46_24325 0.71 -0.2
5,193,589 - IAI46_24325 0.71 +0.2
5,193,628 + IAI46_24325 0.74 +0.1
5,193,629 - IAI46_24325 0.74 -0.2
5,193,629 - IAI46_24325 0.74 -0.4
5,193,675 + IAI46_24325 0.77 -0.1
5,193,742 + IAI46_24325 0.81 -1.2
5,193,742 + IAI46_24325 0.81 -0.9
5,193,743 - IAI46_24325 0.81 -0.5
5,193,743 - IAI46_24325 0.81 -0.4
5,193,755 + IAI46_24325 0.82 +0.9
5,193,756 - IAI46_24325 0.82 +0.4
5,193,803 + IAI46_24325 0.86 +0.8
5,193,812 + IAI46_24325 0.86 +0.1
5,193,823 + IAI46_24325 0.87 +0.1
5,193,824 - IAI46_24325 0.87 +0.8
5,193,824 - IAI46_24325 0.87 +0.1
5,193,824 - IAI46_24325 0.87 -0.0
5,193,963 - -0.1
5,194,006 + +0.2
5,194,006 + +0.8
5,194,007 - +0.2
5,194,010 + -0.3
5,194,011 - +0.1
5,194,011 - +0.2
5,194,022 + +0.3
5,194,022 + +0.1
5,194,023 - +0.0
5,194,023 - +0.1
5,194,023 - -0.3
5,194,023 - +0.9
5,194,031 + +0.0
5,194,032 - -0.6
5,194,032 - +0.3
5,194,053 - +1.4
5,194,099 + +0.2
5,194,099 + +0.0
5,194,099 + +0.2
5,194,100 - +0.1
5,194,100 - -0.4
5,194,100 - +0.2
5,194,100 - -0.2
5,194,100 - +0.1
5,194,100 - +1.3
5,194,100 - +0.6
5,194,101 + -0.0
5,194,101 + -0.5
5,194,101 + -0.1
5,194,130 + +0.2
5,194,178 + +0.1
5,194,178 + -0.2
5,194,179 - -0.1
5,194,179 - +0.3
5,194,184 + -0.2
5,194,185 - -0.2
5,194,185 - -0.5
5,194,201 + -0.2
5,194,201 + -1.0
5,194,376 - IAI46_24330 0.21 -2.0
5,194,407 + IAI46_24330 0.25 +0.8
5,194,651 + IAI46_24330 0.52 +0.7
5,194,652 - IAI46_24330 0.52 +0.1
5,194,685 - IAI46_24330 0.56 -0.9
5,194,763 + IAI46_24330 0.64 -0.5
5,194,949 + IAI46_24330 0.85 +1.1
5,194,950 - IAI46_24330 0.85 +0.4
5,194,950 - IAI46_24330 0.85 +0.7
5,194,966 + IAI46_24330 0.87 -1.4
5,194,973 + IAI46_24330 0.88 +1.3
5,194,973 + IAI46_24330 0.88 -0.2
5,194,973 + IAI46_24330 0.88 +0.4
5,194,974 - IAI46_24330 0.88 -0.7
5,194,979 + IAI46_24330 0.88 -0.8
5,195,063 - +0.2
5,195,063 - +0.6
5,195,066 - -1.4
5,195,083 - +0.4
5,195,102 + +0.9
5,195,128 + -0.9
5,195,134 + -0.2
5,195,135 - +1.5
5,195,159 + -0.2
5,195,159 + +0.2
5,195,160 - -0.3
5,195,160 - +0.1
5,195,160 - -0.3
5,195,198 + +0.5
5,195,198 + +0.3
5,195,203 - -1.6
5,195,203 - -0.9
5,195,237 + -0.9
5,195,257 - +0.4
5,195,316 - IAI46_24335 0.16 +0.6
5,195,367 + IAI46_24335 0.24 +0.2
5,195,368 - IAI46_24335 0.24 +0.2
5,195,415 + IAI46_24335 0.30 -1.2
5,195,416 - IAI46_24335 0.31 +0.2
5,195,494 + IAI46_24335 0.42 +0.1
5,195,532 + IAI46_24335 0.47 +0.2
5,195,533 - IAI46_24335 0.47 +0.1
5,195,533 - IAI46_24335 0.47 +0.8
5,195,533 - IAI46_24335 0.47 +1.0
5,195,533 - IAI46_24335 0.47 +0.0
5,195,533 - IAI46_24335 0.47 -0.1
5,195,533 - IAI46_24335 0.47 +0.3
5,195,533 - IAI46_24335 0.47 -0.0
5,195,535 + IAI46_24335 0.48 +0.2
5,195,535 + IAI46_24335 0.48 +0.3
5,195,547 + IAI46_24335 0.49 +1.2
5,195,581 - IAI46_24335 0.54 -0.4
5,195,653 + IAI46_24335 0.64 -1.1
5,195,654 - IAI46_24335 0.65 -0.1
5,195,682 - IAI46_24335 0.69 +0.6
5,195,684 - IAI46_24335 0.69 +0.0
5,195,684 - IAI46_24335 0.69 +0.7
5,195,699 - IAI46_24335 0.71 -0.0
5,195,800 - IAI46_24335 0.85 -0.8
5,196,076 - +1.2

Or see this region's nucleotide sequence