Strain Fitness in Serratia liquefaciens MT49 around IAI46_24185

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24175 and IAI46_24180 overlap by 8 nucleotidesIAI46_24180 and IAI46_24185 are separated by 1 nucleotidesIAI46_24185 and IAI46_24190 are separated by 13 nucleotides IAI46_24175: IAI46_24175 - sugar ABC transporter ATP-binding protein, at 5,152,413 to 5,153,912 _24175 IAI46_24180: IAI46_24180 - ABC transporter permease, at 5,153,905 to 5,154,831 _24180 IAI46_24185: IAI46_24185 - ABC transporter permease, at 5,154,833 to 5,155,786 _24185 IAI46_24190: IAI46_24190 - FGGY-family carbohydrate kinase, at 5,155,800 to 5,157,437 _24190 Position (kb) 5154 5155 5156Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5153.910 kb on + strandat 5153.950 kb on + strandat 5153.981 kb on + strandat 5153.982 kb on - strandat 5153.982 kb on - strandat 5153.982 kb on - strandat 5153.982 kb on - strandat 5154.142 kb on + strand, within IAI46_24180at 5154.143 kb on - strand, within IAI46_24180at 5154.250 kb on + strand, within IAI46_24180at 5154.250 kb on + strand, within IAI46_24180at 5154.251 kb on - strand, within IAI46_24180at 5154.251 kb on - strand, within IAI46_24180at 5154.304 kb on + strand, within IAI46_24180at 5154.304 kb on + strand, within IAI46_24180at 5154.305 kb on - strand, within IAI46_24180at 5154.364 kb on - strand, within IAI46_24180at 5154.412 kb on + strand, within IAI46_24180at 5154.413 kb on - strand, within IAI46_24180at 5154.449 kb on + strand, within IAI46_24180at 5154.449 kb on + strand, within IAI46_24180at 5154.453 kb on + strand, within IAI46_24180at 5154.453 kb on + strand, within IAI46_24180at 5154.453 kb on + strand, within IAI46_24180at 5154.454 kb on - strand, within IAI46_24180at 5154.568 kb on + strand, within IAI46_24180at 5154.580 kb on + strand, within IAI46_24180at 5154.581 kb on - strand, within IAI46_24180at 5154.827 kb on + strandat 5154.827 kb on + strandat 5154.827 kb on + strandat 5154.827 kb on + strandat 5154.827 kb on + strandat 5154.827 kb on + strandat 5154.828 kb on - strandat 5154.828 kb on - strandat 5154.828 kb on - strandat 5154.828 kb on - strandat 5155.007 kb on - strand, within IAI46_24185at 5155.016 kb on - strand, within IAI46_24185at 5155.175 kb on - strand, within IAI46_24185at 5155.255 kb on + strand, within IAI46_24185at 5155.320 kb on + strand, within IAI46_24185at 5155.321 kb on + strand, within IAI46_24185at 5155.321 kb on + strand, within IAI46_24185at 5155.322 kb on - strand, within IAI46_24185at 5155.418 kb on + strand, within IAI46_24185at 5155.419 kb on - strand, within IAI46_24185at 5155.462 kb on - strand, within IAI46_24185at 5155.490 kb on + strand, within IAI46_24185at 5155.491 kb on - strand, within IAI46_24185at 5155.492 kb on + strand, within IAI46_24185at 5155.493 kb on - strand, within IAI46_24185at 5155.577 kb on + strand, within IAI46_24185at 5155.577 kb on + strand, within IAI46_24185at 5155.577 kb on + strand, within IAI46_24185at 5155.578 kb on - strand, within IAI46_24185at 5155.618 kb on + strand, within IAI46_24185at 5155.619 kb on - strand, within IAI46_24185at 5155.718 kb on + strandat 5155.718 kb on + strandat 5155.718 kb on + strandat 5155.719 kb on - strandat 5155.719 kb on - strandat 5155.809 kb on + strandat 5155.809 kb on + strandat 5155.814 kb on + strandat 5155.814 kb on + strandat 5155.815 kb on - strandat 5155.815 kb on - strandat 5155.815 kb on - strandat 5155.822 kb on + strandat 5155.822 kb on + strandat 5155.822 kb on + strandat 5155.822 kb on + strandat 5155.823 kb on - strandat 5155.823 kb on - strandat 5155.823 kb on - strandat 5155.828 kb on + strandat 5155.828 kb on + strandat 5155.828 kb on + strandat 5155.829 kb on - strandat 5155.829 kb on - strandat 5155.829 kb on - strandat 5155.855 kb on + strandat 5155.950 kb on - strandat 5155.950 kb on - strandat 5155.950 kb on - strandat 5156.252 kb on + strand, within IAI46_24190at 5156.252 kb on + strand, within IAI46_24190at 5156.253 kb on - strand, within IAI46_24190at 5156.253 kb on - strand, within IAI46_24190at 5156.253 kb on - strand, within IAI46_24190at 5156.253 kb on - strand, within IAI46_24190at 5156.367 kb on + strand, within IAI46_24190at 5156.367 kb on + strand, within IAI46_24190at 5156.368 kb on - strand, within IAI46_24190at 5156.368 kb on - strand, within IAI46_24190at 5156.368 kb on - strand, within IAI46_24190at 5156.400 kb on + strand, within IAI46_24190at 5156.654 kb on + strand, within IAI46_24190at 5156.669 kb on + strand, within IAI46_24190at 5156.696 kb on + strand, within IAI46_24190at 5156.708 kb on - strand, within IAI46_24190at 5156.718 kb on + strand, within IAI46_24190at 5156.718 kb on + strand, within IAI46_24190at 5156.719 kb on - strand, within IAI46_24190at 5156.719 kb on - strand, within IAI46_24190at 5156.719 kb on - strand, within IAI46_24190at 5156.721 kb on + strand, within IAI46_24190at 5156.722 kb on - strand, within IAI46_24190

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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5,153,910 + -0.9
5,153,950 + -0.4
5,153,981 + +0.3
5,153,982 - +0.7
5,153,982 - +0.3
5,153,982 - -0.8
5,153,982 - -0.1
5,154,142 + IAI46_24180 0.26 +0.5
5,154,143 - IAI46_24180 0.26 -0.2
5,154,250 + IAI46_24180 0.37 -0.3
5,154,250 + IAI46_24180 0.37 +0.7
5,154,251 - IAI46_24180 0.37 +0.6
5,154,251 - IAI46_24180 0.37 -0.5
5,154,304 + IAI46_24180 0.43 -0.1
5,154,304 + IAI46_24180 0.43 +1.1
5,154,305 - IAI46_24180 0.43 +0.2
5,154,364 - IAI46_24180 0.50 -0.4
5,154,412 + IAI46_24180 0.55 -0.3
5,154,413 - IAI46_24180 0.55 -0.5
5,154,449 + IAI46_24180 0.59 +0.9
5,154,449 + IAI46_24180 0.59 +0.2
5,154,453 + IAI46_24180 0.59 +0.6
5,154,453 + IAI46_24180 0.59 -0.1
5,154,453 + IAI46_24180 0.59 +0.2
5,154,454 - IAI46_24180 0.59 +1.1
5,154,568 + IAI46_24180 0.72 -0.2
5,154,580 + IAI46_24180 0.73 -0.4
5,154,581 - IAI46_24180 0.73 -0.5
5,154,827 + +0.1
5,154,827 + -0.4
5,154,827 + +1.9
5,154,827 + +0.6
5,154,827 + +0.1
5,154,827 + -0.3
5,154,828 - +1.0
5,154,828 - +2.4
5,154,828 - +0.9
5,154,828 - -0.8
5,155,007 - IAI46_24185 0.18 +0.4
5,155,016 - IAI46_24185 0.19 -1.0
5,155,175 - IAI46_24185 0.36 +0.8
5,155,255 + IAI46_24185 0.44 +0.8
5,155,320 + IAI46_24185 0.51 -0.5
5,155,321 + IAI46_24185 0.51 -0.1
5,155,321 + IAI46_24185 0.51 -0.2
5,155,322 - IAI46_24185 0.51 +2.9
5,155,418 + IAI46_24185 0.61 -0.9
5,155,419 - IAI46_24185 0.61 +0.9
5,155,462 - IAI46_24185 0.66 -0.4
5,155,490 + IAI46_24185 0.69 -0.6
5,155,491 - IAI46_24185 0.69 +1.3
5,155,492 + IAI46_24185 0.69 -0.1
5,155,493 - IAI46_24185 0.69 +0.5
5,155,577 + IAI46_24185 0.78 +0.2
5,155,577 + IAI46_24185 0.78 -1.5
5,155,577 + IAI46_24185 0.78 +0.1
5,155,578 - IAI46_24185 0.78 +1.1
5,155,618 + IAI46_24185 0.82 -0.5
5,155,619 - IAI46_24185 0.82 +0.3
5,155,718 + -0.7
5,155,718 + -0.2
5,155,718 + -0.1
5,155,719 - -2.1
5,155,719 - +0.1
5,155,809 + +0.4
5,155,809 + -0.0
5,155,814 + -0.9
5,155,814 + +1.2
5,155,815 - +2.8
5,155,815 - -1.0
5,155,815 - -0.6
5,155,822 + +0.5
5,155,822 + +1.1
5,155,822 + +0.4
5,155,822 + -0.1
5,155,823 - -0.5
5,155,823 - +0.6
5,155,823 - +0.0
5,155,828 + -1.0
5,155,828 + -0.7
5,155,828 + +0.3
5,155,829 - +0.1
5,155,829 - -0.2
5,155,829 - -0.6
5,155,855 + -0.4
5,155,950 - -0.6
5,155,950 - -0.1
5,155,950 - +0.3
5,156,252 + IAI46_24190 0.28 -0.1
5,156,252 + IAI46_24190 0.28 +0.3
5,156,253 - IAI46_24190 0.28 +1.4
5,156,253 - IAI46_24190 0.28 +0.5
5,156,253 - IAI46_24190 0.28 +0.4
5,156,253 - IAI46_24190 0.28 -0.2
5,156,367 + IAI46_24190 0.35 -0.3
5,156,367 + IAI46_24190 0.35 +0.1
5,156,368 - IAI46_24190 0.35 -0.1
5,156,368 - IAI46_24190 0.35 +0.2
5,156,368 - IAI46_24190 0.35 -0.4
5,156,400 + IAI46_24190 0.37 +0.5
5,156,654 + IAI46_24190 0.52 +0.8
5,156,669 + IAI46_24190 0.53 +0.1
5,156,696 + IAI46_24190 0.55 +0.2
5,156,708 - IAI46_24190 0.55 -0.5
5,156,718 + IAI46_24190 0.56 -0.0
5,156,718 + IAI46_24190 0.56 -0.1
5,156,719 - IAI46_24190 0.56 -0.2
5,156,719 - IAI46_24190 0.56 +0.4
5,156,719 - IAI46_24190 0.56 +0.7
5,156,721 + IAI46_24190 0.56 -0.4
5,156,722 - IAI46_24190 0.56 -0.2

Or see this region's nucleotide sequence