Strain Fitness in Serratia liquefaciens MT49 around IAI46_22915

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22910 and IAI46_22915 are separated by 34 nucleotidesIAI46_22915 and IAI46_22920 are separated by 175 nucleotidesIAI46_22920 and IAI46_22925 are separated by 4 nucleotides IAI46_22910: IAI46_22910 - NAD(P)-dependent alcohol dehydrogenase, at 4,888,375 to 4,889,427 _22910 IAI46_22915: IAI46_22915 - maltose O-acetyltransferase, at 4,889,462 to 4,890,013 _22915 IAI46_22920: IAI46_22920 - MmcQ/YjbR family DNA-binding protein, at 4,890,189 to 4,890,542 _22920 IAI46_22925: IAI46_22925 - YjbQ family protein, at 4,890,547 to 4,890,963 _22925 Position (kb) 4889 4890 4891Strain fitness (log2 ratio) -1 0 1 2 3at 4888.509 kb on - strand, within IAI46_22910at 4888.641 kb on + strand, within IAI46_22910at 4888.641 kb on + strand, within IAI46_22910at 4888.642 kb on - strand, within IAI46_22910at 4888.642 kb on - strand, within IAI46_22910at 4888.693 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.721 kb on - strand, within IAI46_22910at 4888.721 kb on - strand, within IAI46_22910at 4888.722 kb on + strand, within IAI46_22910at 4888.722 kb on + strand, within IAI46_22910at 4888.756 kb on + strand, within IAI46_22910at 4888.757 kb on - strand, within IAI46_22910at 4888.765 kb on + strand, within IAI46_22910at 4888.781 kb on + strand, within IAI46_22910at 4888.781 kb on + strand, within IAI46_22910at 4888.781 kb on + strand, within IAI46_22910at 4888.782 kb on - strand, within IAI46_22910at 4888.782 kb on - strand, within IAI46_22910at 4888.784 kb on + strand, within IAI46_22910at 4888.785 kb on - strand, within IAI46_22910at 4888.785 kb on - strand, within IAI46_22910at 4888.845 kb on - strand, within IAI46_22910at 4888.867 kb on + strand, within IAI46_22910at 4889.097 kb on + strand, within IAI46_22910at 4889.104 kb on - strand, within IAI46_22910at 4889.218 kb on - strand, within IAI46_22910at 4889.218 kb on - strand, within IAI46_22910at 4889.313 kb on + strand, within IAI46_22910at 4889.313 kb on + strand, within IAI46_22910at 4889.313 kb on + strand, within IAI46_22910at 4889.314 kb on - strand, within IAI46_22910at 4889.314 kb on - strand, within IAI46_22910at 4889.425 kb on + strandat 4889.426 kb on - strandat 4889.464 kb on - strandat 4889.474 kb on + strandat 4889.475 kb on - strandat 4889.581 kb on + strand, within IAI46_22915at 4889.582 kb on - strand, within IAI46_22915at 4889.611 kb on + strand, within IAI46_22915at 4889.611 kb on + strand, within IAI46_22915at 4889.686 kb on + strand, within IAI46_22915at 4889.688 kb on + strand, within IAI46_22915at 4889.688 kb on + strand, within IAI46_22915at 4889.688 kb on + strand, within IAI46_22915at 4889.688 kb on + strand, within IAI46_22915at 4889.689 kb on - strand, within IAI46_22915at 4889.689 kb on - strand, within IAI46_22915at 4889.689 kb on - strand, within IAI46_22915at 4889.692 kb on + strand, within IAI46_22915at 4889.692 kb on + strand, within IAI46_22915at 4889.693 kb on - strand, within IAI46_22915at 4889.693 kb on - strand, within IAI46_22915at 4889.693 kb on - strand, within IAI46_22915at 4889.693 kb on - strand, within IAI46_22915at 4889.693 kb on - strand, within IAI46_22915at 4889.719 kb on + strand, within IAI46_22915at 4889.719 kb on + strand, within IAI46_22915at 4889.719 kb on + strand, within IAI46_22915at 4889.719 kb on + strand, within IAI46_22915at 4889.720 kb on - strand, within IAI46_22915at 4889.741 kb on + strand, within IAI46_22915at 4889.790 kb on + strand, within IAI46_22915at 4889.790 kb on + strand, within IAI46_22915at 4889.791 kb on - strand, within IAI46_22915at 4889.799 kb on + strand, within IAI46_22915at 4889.800 kb on - strand, within IAI46_22915at 4889.911 kb on - strand, within IAI46_22915at 4889.974 kb on - strandat 4890.037 kb on + strandat 4890.037 kb on + strandat 4890.054 kb on + strandat 4890.055 kb on - strandat 4890.063 kb on + strandat 4890.168 kb on + strandat 4890.169 kb on - strandat 4890.169 kb on - strandat 4890.181 kb on - strandat 4890.183 kb on - strandat 4890.184 kb on + strandat 4890.184 kb on + strandat 4890.184 kb on + strandat 4890.184 kb on + strandat 4890.185 kb on - strandat 4890.185 kb on - strandat 4890.185 kb on - strandat 4890.191 kb on - strandat 4890.245 kb on - strand, within IAI46_22920at 4890.245 kb on - strand, within IAI46_22920at 4890.263 kb on + strand, within IAI46_22920at 4890.264 kb on - strand, within IAI46_22920at 4890.265 kb on + strand, within IAI46_22920at 4890.265 kb on + strand, within IAI46_22920at 4890.265 kb on + strand, within IAI46_22920at 4890.265 kb on + strand, within IAI46_22920at 4890.265 kb on + strand, within IAI46_22920at 4890.305 kb on + strand, within IAI46_22920at 4890.364 kb on - strand, within IAI46_22920at 4890.417 kb on + strand, within IAI46_22920at 4890.440 kb on + strand, within IAI46_22920at 4890.517 kb on + strandat 4890.517 kb on + strandat 4890.518 kb on - strandat 4890.518 kb on - strandat 4890.537 kb on - strandat 4890.559 kb on + strandat 4890.559 kb on + strandat 4890.560 kb on - strandat 4890.722 kb on + strand, within IAI46_22925at 4890.722 kb on + strand, within IAI46_22925at 4890.723 kb on - strand, within IAI46_22925at 4890.723 kb on - strand, within IAI46_22925at 4890.735 kb on - strand, within IAI46_22925at 4890.735 kb on - strand, within IAI46_22925at 4890.792 kb on + strand, within IAI46_22925at 4890.793 kb on - strand, within IAI46_22925at 4890.793 kb on - strand, within IAI46_22925at 4890.831 kb on + strand, within IAI46_22925at 4890.832 kb on - strand, within IAI46_22925at 4890.841 kb on + strand, within IAI46_22925at 4890.841 kb on + strand, within IAI46_22925at 4890.874 kb on + strand, within IAI46_22925at 4890.874 kb on + strand, within IAI46_22925at 4890.874 kb on + strand, within IAI46_22925at 4890.875 kb on - strand, within IAI46_22925at 4890.884 kb on - strand, within IAI46_22925at 4890.894 kb on + strand, within IAI46_22925at 4890.894 kb on + strand, within IAI46_22925at 4890.895 kb on - strand, within IAI46_22925at 4890.963 kb on + strandat 4890.963 kb on + strandat 4890.963 kb on + strandat 4890.964 kb on - strandat 4890.964 kb on - strandat 4890.985 kb on + strandat 4890.986 kb on - strandat 4890.986 kb on - strandat 4890.986 kb on - strandat 4890.987 kb on + strandat 4890.988 kb on - strandat 4890.988 kb on - strandat 4890.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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4,888,509 - IAI46_22910 0.13 -0.1
4,888,641 + IAI46_22910 0.25 +0.3
4,888,641 + IAI46_22910 0.25 +0.9
4,888,642 - IAI46_22910 0.25 -0.6
4,888,642 - IAI46_22910 0.25 -1.2
4,888,693 + IAI46_22910 0.30 -0.8
4,888,720 + IAI46_22910 0.33 -0.4
4,888,720 + IAI46_22910 0.33 +0.6
4,888,720 + IAI46_22910 0.33 +1.4
4,888,720 + IAI46_22910 0.33 +0.7
4,888,720 + IAI46_22910 0.33 -0.4
4,888,720 + IAI46_22910 0.33 -0.4
4,888,720 + IAI46_22910 0.33 +0.2
4,888,720 + IAI46_22910 0.33 +0.4
4,888,721 - IAI46_22910 0.33 +0.3
4,888,721 - IAI46_22910 0.33 +0.2
4,888,722 + IAI46_22910 0.33 +0.4
4,888,722 + IAI46_22910 0.33 +0.7
4,888,756 + IAI46_22910 0.36 +0.5
4,888,757 - IAI46_22910 0.36 +0.1
4,888,765 + IAI46_22910 0.37 -0.3
4,888,781 + IAI46_22910 0.39 +0.3
4,888,781 + IAI46_22910 0.39 +2.9
4,888,781 + IAI46_22910 0.39 -1.0
4,888,782 - IAI46_22910 0.39 +0.4
4,888,782 - IAI46_22910 0.39 +1.0
4,888,784 + IAI46_22910 0.39 -0.4
4,888,785 - IAI46_22910 0.39 +0.8
4,888,785 - IAI46_22910 0.39 +0.7
4,888,845 - IAI46_22910 0.45 -0.0
4,888,867 + IAI46_22910 0.47 -0.2
4,889,097 + IAI46_22910 0.69 -0.7
4,889,104 - IAI46_22910 0.69 +1.8
4,889,218 - IAI46_22910 0.80 +0.0
4,889,218 - IAI46_22910 0.80 +0.6
4,889,313 + IAI46_22910 0.89 -0.9
4,889,313 + IAI46_22910 0.89 -0.8
4,889,313 + IAI46_22910 0.89 +1.4
4,889,314 - IAI46_22910 0.89 +1.3
4,889,314 - IAI46_22910 0.89 +0.4
4,889,425 + -0.3
4,889,426 - +0.9
4,889,464 - -0.1
4,889,474 + +0.1
4,889,475 - +0.2
4,889,581 + IAI46_22915 0.22 +0.7
4,889,582 - IAI46_22915 0.22 +0.1
4,889,611 + IAI46_22915 0.27 +0.3
4,889,611 + IAI46_22915 0.27 +0.4
4,889,686 + IAI46_22915 0.41 -0.2
4,889,688 + IAI46_22915 0.41 +1.5
4,889,688 + IAI46_22915 0.41 -0.6
4,889,688 + IAI46_22915 0.41 +1.4
4,889,688 + IAI46_22915 0.41 +1.4
4,889,689 - IAI46_22915 0.41 +1.3
4,889,689 - IAI46_22915 0.41 +0.4
4,889,689 - IAI46_22915 0.41 -0.6
4,889,692 + IAI46_22915 0.42 +0.4
4,889,692 + IAI46_22915 0.42 +0.2
4,889,693 - IAI46_22915 0.42 +0.9
4,889,693 - IAI46_22915 0.42 -0.1
4,889,693 - IAI46_22915 0.42 +0.8
4,889,693 - IAI46_22915 0.42 +0.5
4,889,693 - IAI46_22915 0.42 +0.4
4,889,719 + IAI46_22915 0.47 -0.7
4,889,719 + IAI46_22915 0.47 +0.7
4,889,719 + IAI46_22915 0.47 -1.1
4,889,719 + IAI46_22915 0.47 +0.0
4,889,720 - IAI46_22915 0.47 +0.3
4,889,741 + IAI46_22915 0.51 -0.4
4,889,790 + IAI46_22915 0.59 -0.0
4,889,790 + IAI46_22915 0.59 -0.6
4,889,791 - IAI46_22915 0.60 -0.2
4,889,799 + IAI46_22915 0.61 +0.3
4,889,800 - IAI46_22915 0.61 -0.7
4,889,911 - IAI46_22915 0.81 -0.6
4,889,974 - -0.2
4,890,037 + -0.6
4,890,037 + -0.5
4,890,054 + +0.0
4,890,055 - -0.2
4,890,063 + -0.0
4,890,168 + +0.3
4,890,169 - +0.2
4,890,169 - +0.0
4,890,181 - -0.0
4,890,183 - +2.1
4,890,184 + +0.9
4,890,184 + -1.3
4,890,184 + -0.3
4,890,184 + +0.8
4,890,185 - -1.3
4,890,185 - +1.3
4,890,185 - +1.0
4,890,191 - +0.4
4,890,245 - IAI46_22920 0.16 +1.1
4,890,245 - IAI46_22920 0.16 -0.2
4,890,263 + IAI46_22920 0.21 +1.2
4,890,264 - IAI46_22920 0.21 +0.2
4,890,265 + IAI46_22920 0.21 +2.4
4,890,265 + IAI46_22920 0.21 -0.1
4,890,265 + IAI46_22920 0.21 +0.0
4,890,265 + IAI46_22920 0.21 +0.5
4,890,265 + IAI46_22920 0.21 +0.8
4,890,305 + IAI46_22920 0.33 +0.4
4,890,364 - IAI46_22920 0.49 -0.1
4,890,417 + IAI46_22920 0.64 +0.5
4,890,440 + IAI46_22920 0.71 +0.1
4,890,517 + +0.2
4,890,517 + -0.1
4,890,518 - +0.5
4,890,518 - +0.5
4,890,537 - +0.9
4,890,559 + +0.1
4,890,559 + +0.3
4,890,560 - +0.2
4,890,722 + IAI46_22925 0.42 +0.2
4,890,722 + IAI46_22925 0.42 +0.2
4,890,723 - IAI46_22925 0.42 +0.3
4,890,723 - IAI46_22925 0.42 +0.1
4,890,735 - IAI46_22925 0.45 -0.5
4,890,735 - IAI46_22925 0.45 -0.1
4,890,792 + IAI46_22925 0.59 -1.1
4,890,793 - IAI46_22925 0.59 -0.1
4,890,793 - IAI46_22925 0.59 +0.2
4,890,831 + IAI46_22925 0.68 -0.2
4,890,832 - IAI46_22925 0.68 -0.2
4,890,841 + IAI46_22925 0.71 +1.0
4,890,841 + IAI46_22925 0.71 +0.0
4,890,874 + IAI46_22925 0.78 +0.5
4,890,874 + IAI46_22925 0.78 +0.3
4,890,874 + IAI46_22925 0.78 -1.2
4,890,875 - IAI46_22925 0.79 +0.8
4,890,884 - IAI46_22925 0.81 -1.1
4,890,894 + IAI46_22925 0.83 +0.1
4,890,894 + IAI46_22925 0.83 -0.7
4,890,895 - IAI46_22925 0.83 -0.3
4,890,963 + +1.4
4,890,963 + -0.5
4,890,963 + -0.4
4,890,964 - -0.6
4,890,964 - -0.0
4,890,985 + +0.1
4,890,986 - +0.8
4,890,986 - -1.0
4,890,986 - -0.5
4,890,987 + +0.1
4,890,988 - -0.1
4,890,988 - +1.3
4,890,988 - +0.6

Or see this region's nucleotide sequence