Strain Fitness in Serratia liquefaciens MT49 around IAI46_20390

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20385 and IAI46_20390 are separated by 315 nucleotidesIAI46_20390 and IAI46_20395 are separated by 239 nucleotides IAI46_20385: IAI46_20385 - MFS transporter, at 4,304,331 to 4,305,740 _20385 IAI46_20390: IAI46_20390 - N-acetylmuramoyl-L-alanine amidase, at 4,306,056 to 4,307,312 _20390 IAI46_20395: IAI46_20395 - amino-acid N-acetyltransferase, at 4,307,552 to 4,308,877 _20395 Position (kb) 4306 4307 4308Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4305.073 kb on + strand, within IAI46_20385at 4305.073 kb on + strand, within IAI46_20385at 4305.074 kb on - strand, within IAI46_20385at 4305.084 kb on - strand, within IAI46_20385at 4305.220 kb on + strand, within IAI46_20385at 4305.220 kb on + strand, within IAI46_20385at 4305.220 kb on + strand, within IAI46_20385at 4305.220 kb on + strand, within IAI46_20385at 4305.220 kb on + strand, within IAI46_20385at 4305.220 kb on + strand, within IAI46_20385at 4305.220 kb on + strand, within IAI46_20385at 4305.220 kb on + strand, within IAI46_20385at 4305.364 kb on - strand, within IAI46_20385at 4305.533 kb on - strand, within IAI46_20385at 4305.584 kb on + strand, within IAI46_20385at 4305.585 kb on - strand, within IAI46_20385at 4305.585 kb on - strand, within IAI46_20385at 4305.628 kb on - strandat 4305.628 kb on - strandat 4305.772 kb on + strandat 4305.773 kb on - strandat 4305.851 kb on + strandat 4305.935 kb on + strandat 4305.935 kb on + strandat 4305.936 kb on - strandat 4305.947 kb on + strandat 4305.948 kb on - strandat 4306.018 kb on + strandat 4306.039 kb on - strandat 4306.057 kb on + strandat 4306.096 kb on + strandat 4306.097 kb on - strandat 4306.103 kb on + strandat 4306.103 kb on + strandat 4306.103 kb on + strandat 4306.104 kb on - strandat 4306.118 kb on + strandat 4306.118 kb on + strandat 4306.119 kb on - strandat 4306.149 kb on - strandat 4306.149 kb on - strandat 4306.151 kb on + strandat 4306.152 kb on - strandat 4306.152 kb on - strandat 4306.173 kb on + strandat 4306.174 kb on - strandat 4306.185 kb on - strand, within IAI46_20390at 4306.185 kb on - strand, within IAI46_20390at 4306.205 kb on + strand, within IAI46_20390at 4306.228 kb on - strand, within IAI46_20390at 4306.342 kb on - strand, within IAI46_20390at 4306.369 kb on + strand, within IAI46_20390at 4306.370 kb on - strand, within IAI46_20390at 4306.402 kb on - strand, within IAI46_20390at 4306.477 kb on - strand, within IAI46_20390at 4306.607 kb on + strand, within IAI46_20390at 4306.607 kb on + strand, within IAI46_20390at 4306.639 kb on - strand, within IAI46_20390at 4306.674 kb on - strand, within IAI46_20390at 4306.751 kb on + strand, within IAI46_20390at 4306.752 kb on - strand, within IAI46_20390at 4306.752 kb on - strand, within IAI46_20390at 4306.825 kb on + strand, within IAI46_20390at 4306.855 kb on + strand, within IAI46_20390at 4306.934 kb on + strand, within IAI46_20390at 4306.934 kb on + strand, within IAI46_20390at 4306.934 kb on + strand, within IAI46_20390at 4306.935 kb on - strand, within IAI46_20390at 4306.961 kb on + strand, within IAI46_20390at 4307.023 kb on + strand, within IAI46_20390at 4307.041 kb on - strand, within IAI46_20390at 4307.060 kb on + strand, within IAI46_20390at 4307.060 kb on + strand, within IAI46_20390at 4307.133 kb on - strand, within IAI46_20390at 4307.134 kb on + strand, within IAI46_20390at 4307.135 kb on - strand, within IAI46_20390at 4307.135 kb on - strand, within IAI46_20390at 4307.135 kb on - strand, within IAI46_20390at 4307.150 kb on + strand, within IAI46_20390at 4307.173 kb on + strand, within IAI46_20390at 4307.173 kb on + strand, within IAI46_20390at 4307.173 kb on + strand, within IAI46_20390at 4307.173 kb on + strand, within IAI46_20390at 4307.174 kb on - strand, within IAI46_20390at 4307.174 kb on - strand, within IAI46_20390at 4307.174 kb on - strand, within IAI46_20390at 4307.174 kb on - strand, within IAI46_20390at 4307.174 kb on - strand, within IAI46_20390at 4307.177 kb on + strand, within IAI46_20390at 4307.177 kb on + strand, within IAI46_20390at 4307.178 kb on - strand, within IAI46_20390at 4307.178 kb on - strand, within IAI46_20390at 4307.178 kb on - strand, within IAI46_20390at 4307.196 kb on + strandat 4307.255 kb on + strandat 4307.362 kb on - strandat 4307.529 kb on - strandat 4307.563 kb on + strandat 4307.563 kb on + strandat 4307.564 kb on - strandat 4307.564 kb on - strandat 4307.567 kb on - strandat 4307.707 kb on + strand, within IAI46_20395at 4307.735 kb on + strand, within IAI46_20395at 4307.777 kb on - strand, within IAI46_20395at 4307.804 kb on - strand, within IAI46_20395at 4307.804 kb on - strand, within IAI46_20395at 4307.924 kb on - strand, within IAI46_20395at 4307.947 kb on + strand, within IAI46_20395at 4307.947 kb on + strand, within IAI46_20395at 4307.948 kb on - strand, within IAI46_20395at 4308.013 kb on + strand, within IAI46_20395at 4308.013 kb on + strand, within IAI46_20395at 4308.014 kb on - strand, within IAI46_20395at 4308.208 kb on + strand, within IAI46_20395at 4308.312 kb on + strand, within IAI46_20395

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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4,305,073 + IAI46_20385 0.53 +0.3
4,305,073 + IAI46_20385 0.53 -0.1
4,305,074 - IAI46_20385 0.53 +0.1
4,305,084 - IAI46_20385 0.53 +0.2
4,305,220 + IAI46_20385 0.63 -0.5
4,305,220 + IAI46_20385 0.63 -0.3
4,305,220 + IAI46_20385 0.63 -1.7
4,305,220 + IAI46_20385 0.63 +0.1
4,305,220 + IAI46_20385 0.63 -0.5
4,305,220 + IAI46_20385 0.63 +0.0
4,305,220 + IAI46_20385 0.63 -0.2
4,305,220 + IAI46_20385 0.63 +0.2
4,305,364 - IAI46_20385 0.73 +0.3
4,305,533 - IAI46_20385 0.85 +1.2
4,305,584 + IAI46_20385 0.89 +0.0
4,305,585 - IAI46_20385 0.89 +0.5
4,305,585 - IAI46_20385 0.89 +1.3
4,305,628 - -0.7
4,305,628 - +0.3
4,305,772 + -0.6
4,305,773 - +0.1
4,305,851 + -1.1
4,305,935 + +0.7
4,305,935 + -0.4
4,305,936 - -0.1
4,305,947 + -0.9
4,305,948 - +0.5
4,306,018 + +1.7
4,306,039 - -0.8
4,306,057 + -0.5
4,306,096 + +0.2
4,306,097 - -1.2
4,306,103 + +1.0
4,306,103 + -0.2
4,306,103 + -0.3
4,306,104 - +0.4
4,306,118 + -0.9
4,306,118 + +1.3
4,306,119 - -0.0
4,306,149 - +2.4
4,306,149 - +0.1
4,306,151 + +0.2
4,306,152 - +0.4
4,306,152 - -0.3
4,306,173 + -1.3
4,306,174 - +1.0
4,306,185 - IAI46_20390 0.10 -2.9
4,306,185 - IAI46_20390 0.10 +0.6
4,306,205 + IAI46_20390 0.12 -0.2
4,306,228 - IAI46_20390 0.14 +0.1
4,306,342 - IAI46_20390 0.23 -0.6
4,306,369 + IAI46_20390 0.25 -0.2
4,306,370 - IAI46_20390 0.25 +0.4
4,306,402 - IAI46_20390 0.28 -0.2
4,306,477 - IAI46_20390 0.33 +1.2
4,306,607 + IAI46_20390 0.44 -0.2
4,306,607 + IAI46_20390 0.44 -0.1
4,306,639 - IAI46_20390 0.46 -1.0
4,306,674 - IAI46_20390 0.49 +0.8
4,306,751 + IAI46_20390 0.55 -0.0
4,306,752 - IAI46_20390 0.55 -1.8
4,306,752 - IAI46_20390 0.55 -0.1
4,306,825 + IAI46_20390 0.61 +0.7
4,306,855 + IAI46_20390 0.64 +0.2
4,306,934 + IAI46_20390 0.70 +0.2
4,306,934 + IAI46_20390 0.70 +1.1
4,306,934 + IAI46_20390 0.70 -0.8
4,306,935 - IAI46_20390 0.70 +0.4
4,306,961 + IAI46_20390 0.72 +0.8
4,307,023 + IAI46_20390 0.77 -0.2
4,307,041 - IAI46_20390 0.78 -0.4
4,307,060 + IAI46_20390 0.80 -0.1
4,307,060 + IAI46_20390 0.80 -1.8
4,307,133 - IAI46_20390 0.86 +0.3
4,307,134 + IAI46_20390 0.86 -0.3
4,307,135 - IAI46_20390 0.86 -2.0
4,307,135 - IAI46_20390 0.86 -0.3
4,307,135 - IAI46_20390 0.86 +0.1
4,307,150 + IAI46_20390 0.87 +0.3
4,307,173 + IAI46_20390 0.89 +0.9
4,307,173 + IAI46_20390 0.89 -0.2
4,307,173 + IAI46_20390 0.89 +0.5
4,307,173 + IAI46_20390 0.89 -0.3
4,307,174 - IAI46_20390 0.89 +1.0
4,307,174 - IAI46_20390 0.89 -0.5
4,307,174 - IAI46_20390 0.89 +0.5
4,307,174 - IAI46_20390 0.89 +0.3
4,307,174 - IAI46_20390 0.89 +0.3
4,307,177 + IAI46_20390 0.89 +1.1
4,307,177 + IAI46_20390 0.89 -0.2
4,307,178 - IAI46_20390 0.89 +0.8
4,307,178 - IAI46_20390 0.89 -0.2
4,307,178 - IAI46_20390 0.89 +0.1
4,307,196 + +0.0
4,307,255 + -0.0
4,307,362 - +0.5
4,307,529 - +0.4
4,307,563 + +0.1
4,307,563 + -0.0
4,307,564 - -1.8
4,307,564 - +0.2
4,307,567 - -0.1
4,307,707 + IAI46_20395 0.12 -1.5
4,307,735 + IAI46_20395 0.14 -1.0
4,307,777 - IAI46_20395 0.17 +0.8
4,307,804 - IAI46_20395 0.19 +0.4
4,307,804 - IAI46_20395 0.19 +0.1
4,307,924 - IAI46_20395 0.28 +0.8
4,307,947 + IAI46_20395 0.30 +0.8
4,307,947 + IAI46_20395 0.30 -0.3
4,307,948 - IAI46_20395 0.30 +0.1
4,308,013 + IAI46_20395 0.35 +0.9
4,308,013 + IAI46_20395 0.35 +0.3
4,308,014 - IAI46_20395 0.35 +1.5
4,308,208 + IAI46_20395 0.49 +0.9
4,308,312 + IAI46_20395 0.57 +0.1

Or see this region's nucleotide sequence