Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_19685 and IAI46_19690 are separated by 545 nucleotides IAI46_19690 and IAI46_19695 overlap by 4 nucleotides IAI46_19695 and IAI46_19700 are separated by 5 nucleotides IAI46_19700 and IAI46_19705 overlap by 4 nucleotides
IAI46_19685: IAI46_19685 - NAD-dependent aldehyde dehydrogenase, at 4,157,372 to 4,158,097
_19685
IAI46_19690: IAI46_19690 - AlpA family transcriptional regulator, at 4,158,643 to 4,158,903
_19690
IAI46_19695: IAI46_19695 - hypothetical protein, at 4,158,900 to 4,159,145
_19695
IAI46_19700: IAI46_19700 - ash family protein, at 4,159,151 to 4,159,696
_19700
IAI46_19705: IAI46_19705 - hypothetical protein, at 4,159,693 to 4,159,956
_19705
Position (kb) 4158
4159 Strain fitness (log2 ratio) -1
0
1
2 at 4157.653 kb on + strand, within IAI46_19685 at 4157.704 kb on + strand, within IAI46_19685 at 4157.704 kb on + strand, within IAI46_19685 at 4157.704 kb on + strand, within IAI46_19685 at 4157.704 kb on + strand, within IAI46_19685 at 4157.705 kb on - strand, within IAI46_19685 at 4157.705 kb on - strand, within IAI46_19685 at 4157.705 kb on - strand, within IAI46_19685 at 4157.708 kb on - strand, within IAI46_19685 at 4157.992 kb on + strand, within IAI46_19685 at 4158.015 kb on + strand, within IAI46_19685 at 4158.131 kb on - strand at 4158.235 kb on + strand at 4158.385 kb on - strand at 4158.413 kb on + strand at 4158.463 kb on - strand at 4158.463 kb on - strand at 4158.463 kb on - strand at 4158.571 kb on + strand at 4158.571 kb on + strand at 4158.572 kb on - strand at 4158.626 kb on - strand at 4158.697 kb on + strand, within IAI46_19690 at 4158.697 kb on + strand, within IAI46_19690 at 4158.698 kb on - strand, within IAI46_19690 at 4158.739 kb on + strand, within IAI46_19690 at 4158.739 kb on + strand, within IAI46_19690 at 4158.740 kb on - strand, within IAI46_19690 at 4158.740 kb on - strand, within IAI46_19690 at 4158.762 kb on + strand, within IAI46_19690 at 4158.769 kb on + strand, within IAI46_19690 at 4158.770 kb on - strand, within IAI46_19690 at 4159.182 kb on - strand at 4159.211 kb on + strand, within IAI46_19700 at 4159.214 kb on - strand, within IAI46_19700 at 4159.214 kb on - strand, within IAI46_19700 at 4159.214 kb on - strand, within IAI46_19700 at 4159.214 kb on - strand, within IAI46_19700 at 4159.214 kb on - strand, within IAI46_19700 at 4159.249 kb on + strand, within IAI46_19700 at 4159.263 kb on - strand, within IAI46_19700 at 4159.344 kb on + strand, within IAI46_19700 at 4159.344 kb on + strand, within IAI46_19700 at 4159.344 kb on + strand, within IAI46_19700 at 4159.345 kb on - strand, within IAI46_19700 at 4159.345 kb on - strand, within IAI46_19700 at 4159.345 kb on - strand, within IAI46_19700 at 4159.349 kb on + strand, within IAI46_19700 at 4159.349 kb on + strand, within IAI46_19700 at 4159.349 kb on + strand, within IAI46_19700 at 4159.350 kb on - strand, within IAI46_19700 at 4159.427 kb on - strand, within IAI46_19700 at 4159.450 kb on + strand, within IAI46_19700 at 4159.457 kb on - strand, within IAI46_19700 at 4159.471 kb on + strand, within IAI46_19700 at 4159.471 kb on + strand, within IAI46_19700 at 4159.471 kb on + strand, within IAI46_19700 at 4159.485 kb on - strand, within IAI46_19700 at 4159.510 kb on + strand, within IAI46_19700 at 4159.534 kb on + strand, within IAI46_19700 at 4159.698 kb on + strand at 4159.699 kb on - strand at 4159.738 kb on - strand, within IAI46_19705 at 4159.871 kb on + strand, within IAI46_19705 at 4159.878 kb on - strand, within IAI46_19705
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 4,157,653 + IAI46_19685 0.39 +1.2 4,157,704 + IAI46_19685 0.46 +0.4 4,157,704 + IAI46_19685 0.46 +0.5 4,157,704 + IAI46_19685 0.46 -0.6 4,157,704 + IAI46_19685 0.46 -0.1 4,157,705 - IAI46_19685 0.46 -0.2 4,157,705 - IAI46_19685 0.46 -0.2 4,157,705 - IAI46_19685 0.46 +0.1 4,157,708 - IAI46_19685 0.46 +0.6 4,157,992 + IAI46_19685 0.85 +0.8 4,158,015 + IAI46_19685 0.89 -0.4 4,158,131 - +0.6 4,158,235 + +0.3 4,158,385 - -0.4 4,158,413 + -0.6 4,158,463 - +0.2 4,158,463 - -0.1 4,158,463 - +0.0 4,158,571 + +1.1 4,158,571 + +0.4 4,158,572 - +1.2 4,158,626 - +0.5 4,158,697 + IAI46_19690 0.21 +0.8 4,158,697 + IAI46_19690 0.21 -0.4 4,158,698 - IAI46_19690 0.21 +0.5 4,158,739 + IAI46_19690 0.37 -1.4 4,158,739 + IAI46_19690 0.37 +0.5 4,158,740 - IAI46_19690 0.37 +0.2 4,158,740 - IAI46_19690 0.37 +0.4 4,158,762 + IAI46_19690 0.46 +1.1 4,158,769 + IAI46_19690 0.48 +0.4 4,158,770 - IAI46_19690 0.49 -0.3 4,159,182 - +0.0 4,159,211 + IAI46_19700 0.11 +1.1 4,159,214 - IAI46_19700 0.12 +0.5 4,159,214 - IAI46_19700 0.12 -0.1 4,159,214 - IAI46_19700 0.12 -0.1 4,159,214 - IAI46_19700 0.12 +1.1 4,159,214 - IAI46_19700 0.12 +0.6 4,159,249 + IAI46_19700 0.18 -0.2 4,159,263 - IAI46_19700 0.21 -0.6 4,159,344 + IAI46_19700 0.35 -0.9 4,159,344 + IAI46_19700 0.35 +0.3 4,159,344 + IAI46_19700 0.35 -0.1 4,159,345 - IAI46_19700 0.36 +0.7 4,159,345 - IAI46_19700 0.36 +0.9 4,159,345 - IAI46_19700 0.36 +1.3 4,159,349 + IAI46_19700 0.36 +0.2 4,159,349 + IAI46_19700 0.36 -0.9 4,159,349 + IAI46_19700 0.36 -0.6 4,159,350 - IAI46_19700 0.36 +0.9 4,159,427 - IAI46_19700 0.51 +1.4 4,159,450 + IAI46_19700 0.55 -1.0 4,159,457 - IAI46_19700 0.56 +1.0 4,159,471 + IAI46_19700 0.59 +0.6 4,159,471 + IAI46_19700 0.59 +0.3 4,159,471 + IAI46_19700 0.59 +0.5 4,159,485 - IAI46_19700 0.61 -0.5 4,159,510 + IAI46_19700 0.66 -0.3 4,159,534 + IAI46_19700 0.70 +1.1 4,159,698 + +1.8 4,159,699 - -0.5 4,159,738 - IAI46_19705 0.17 +1.6 4,159,871 + IAI46_19705 0.67 -0.1 4,159,878 - IAI46_19705 0.70 -0.5
Or see this region's nucleotide sequence