Strain Fitness in Serratia liquefaciens MT49 around IAI46_17535

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17525 and IAI46_17530 are separated by 50 nucleotidesIAI46_17530 and IAI46_17535 are separated by 334 nucleotidesIAI46_17535 and IAI46_17540 are separated by 179 nucleotides IAI46_17525: IAI46_17525 - tyrosine transporter TyrP, at 3,684,621 to 3,685,829 _17525 IAI46_17530: IAI46_17530 - porin, at 3,685,880 to 3,686,422 _17530 IAI46_17535: IAI46_17535 - catalase, at 3,686,757 to 3,688,193 _17535 IAI46_17540: IAI46_17540 - o-succinylbenzoate--CoA ligase, at 3,688,373 to 3,689,758 _17540 Position (kb) 3686 3687 3688 3689Strain fitness (log2 ratio) -2 -1 0 1 2at 3685.828 kb on - strandat 3685.878 kb on + strandat 3685.905 kb on + strandat 3685.905 kb on + strandat 3685.905 kb on + strandat 3685.906 kb on - strandat 3685.906 kb on - strandat 3685.960 kb on + strand, within IAI46_17530at 3685.961 kb on - strand, within IAI46_17530at 3685.961 kb on - strand, within IAI46_17530at 3686.031 kb on + strand, within IAI46_17530at 3686.071 kb on - strand, within IAI46_17530at 3686.272 kb on + strand, within IAI46_17530at 3686.272 kb on + strand, within IAI46_17530at 3686.279 kb on + strand, within IAI46_17530at 3686.329 kb on - strand, within IAI46_17530at 3686.329 kb on - strand, within IAI46_17530at 3686.329 kb on - strand, within IAI46_17530at 3686.440 kb on - strandat 3686.460 kb on + strandat 3686.475 kb on - strandat 3686.475 kb on - strandat 3686.480 kb on + strandat 3686.480 kb on + strandat 3686.480 kb on + strandat 3686.480 kb on + strandat 3686.481 kb on - strandat 3686.494 kb on + strandat 3686.494 kb on + strandat 3686.494 kb on + strandat 3686.495 kb on - strandat 3686.618 kb on + strandat 3686.619 kb on - strandat 3686.638 kb on + strandat 3686.639 kb on - strandat 3686.639 kb on - strandat 3686.639 kb on - strandat 3686.645 kb on - strandat 3686.651 kb on - strandat 3686.651 kb on - strandat 3686.654 kb on - strandat 3686.666 kb on + strandat 3686.667 kb on - strandat 3686.697 kb on - strandat 3686.739 kb on + strandat 3686.807 kb on + strandat 3686.808 kb on - strandat 3686.808 kb on - strandat 3686.810 kb on + strandat 3686.811 kb on - strandat 3686.964 kb on - strand, within IAI46_17535at 3686.967 kb on - strand, within IAI46_17535at 3686.974 kb on - strand, within IAI46_17535at 3687.102 kb on + strand, within IAI46_17535at 3687.117 kb on - strand, within IAI46_17535at 3687.117 kb on - strand, within IAI46_17535at 3687.186 kb on - strand, within IAI46_17535at 3687.286 kb on + strand, within IAI46_17535at 3687.286 kb on + strand, within IAI46_17535at 3687.286 kb on + strand, within IAI46_17535at 3687.287 kb on - strand, within IAI46_17535at 3687.319 kb on - strand, within IAI46_17535at 3687.573 kb on + strand, within IAI46_17535at 3687.573 kb on + strand, within IAI46_17535at 3687.573 kb on + strand, within IAI46_17535at 3687.573 kb on + strand, within IAI46_17535at 3687.573 kb on + strand, within IAI46_17535at 3687.574 kb on - strand, within IAI46_17535at 3687.599 kb on - strand, within IAI46_17535at 3687.666 kb on + strand, within IAI46_17535at 3687.710 kb on - strand, within IAI46_17535at 3687.765 kb on + strand, within IAI46_17535at 3687.842 kb on + strand, within IAI46_17535at 3687.843 kb on - strand, within IAI46_17535at 3687.846 kb on + strand, within IAI46_17535at 3687.847 kb on - strand, within IAI46_17535at 3687.847 kb on - strand, within IAI46_17535at 3687.901 kb on - strand, within IAI46_17535at 3687.944 kb on + strand, within IAI46_17535at 3687.945 kb on - strand, within IAI46_17535at 3688.008 kb on + strand, within IAI46_17535at 3688.008 kb on + strand, within IAI46_17535at 3688.064 kb on + strandat 3688.064 kb on + strandat 3688.065 kb on - strandat 3688.065 kb on - strandat 3688.065 kb on - strandat 3688.065 kb on - strandat 3688.076 kb on + strandat 3688.132 kb on + strandat 3688.133 kb on - strandat 3688.168 kb on + strandat 3688.269 kb on - strandat 3688.269 kb on - strandat 3688.269 kb on - strandat 3688.375 kb on - strandat 3688.385 kb on + strandat 3688.385 kb on + strandat 3688.385 kb on + strandat 3688.386 kb on - strandat 3688.849 kb on + strand, within IAI46_17540at 3689.092 kb on + strand, within IAI46_17540at 3689.125 kb on + strand, within IAI46_17540at 3689.126 kb on - strand, within IAI46_17540

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,685,828 - -0.1
3,685,878 + +1.6
3,685,905 + +0.6
3,685,905 + -0.6
3,685,905 + +0.5
3,685,906 - +0.5
3,685,906 - +0.1
3,685,960 + IAI46_17530 0.15 -0.5
3,685,961 - IAI46_17530 0.15 +0.4
3,685,961 - IAI46_17530 0.15 -0.1
3,686,031 + IAI46_17530 0.28 +0.4
3,686,071 - IAI46_17530 0.35 -0.5
3,686,272 + IAI46_17530 0.72 +0.9
3,686,272 + IAI46_17530 0.72 +1.1
3,686,279 + IAI46_17530 0.73 +0.7
3,686,329 - IAI46_17530 0.83 -0.2
3,686,329 - IAI46_17530 0.83 +0.1
3,686,329 - IAI46_17530 0.83 -0.1
3,686,440 - +0.9
3,686,460 + -0.6
3,686,475 - -1.1
3,686,475 - -0.4
3,686,480 + -0.1
3,686,480 + +0.2
3,686,480 + +0.4
3,686,480 + +0.5
3,686,481 - -0.2
3,686,494 + -0.1
3,686,494 + +0.0
3,686,494 + +0.1
3,686,495 - -2.2
3,686,618 + +0.6
3,686,619 - +0.6
3,686,638 + -0.6
3,686,639 - +0.9
3,686,639 - -0.7
3,686,639 - -0.1
3,686,645 - +0.5
3,686,651 - -0.4
3,686,651 - +0.4
3,686,654 - +0.4
3,686,666 + +0.8
3,686,667 - +0.1
3,686,697 - +0.8
3,686,739 + +2.0
3,686,807 + +1.0
3,686,808 - -0.0
3,686,808 - -1.1
3,686,810 + -0.2
3,686,811 - +1.9
3,686,964 - IAI46_17535 0.14 -0.3
3,686,967 - IAI46_17535 0.15 +1.1
3,686,974 - IAI46_17535 0.15 +0.5
3,687,102 + IAI46_17535 0.24 -0.1
3,687,117 - IAI46_17535 0.25 +0.3
3,687,117 - IAI46_17535 0.25 -1.1
3,687,186 - IAI46_17535 0.30 -0.2
3,687,286 + IAI46_17535 0.37 -0.1
3,687,286 + IAI46_17535 0.37 +0.5
3,687,286 + IAI46_17535 0.37 +0.1
3,687,287 - IAI46_17535 0.37 -0.3
3,687,319 - IAI46_17535 0.39 -0.1
3,687,573 + IAI46_17535 0.57 +0.3
3,687,573 + IAI46_17535 0.57 -0.5
3,687,573 + IAI46_17535 0.57 +0.4
3,687,573 + IAI46_17535 0.57 -0.9
3,687,573 + IAI46_17535 0.57 -0.7
3,687,574 - IAI46_17535 0.57 +0.2
3,687,599 - IAI46_17535 0.59 -0.2
3,687,666 + IAI46_17535 0.63 -0.2
3,687,710 - IAI46_17535 0.66 +0.3
3,687,765 + IAI46_17535 0.70 -1.0
3,687,842 + IAI46_17535 0.76 +0.6
3,687,843 - IAI46_17535 0.76 -0.7
3,687,846 + IAI46_17535 0.76 -0.9
3,687,847 - IAI46_17535 0.76 +0.1
3,687,847 - IAI46_17535 0.76 +0.6
3,687,901 - IAI46_17535 0.80 -1.3
3,687,944 + IAI46_17535 0.83 -0.6
3,687,945 - IAI46_17535 0.83 +0.1
3,688,008 + IAI46_17535 0.87 +0.1
3,688,008 + IAI46_17535 0.87 -0.8
3,688,064 + +1.5
3,688,064 + +1.2
3,688,065 - +0.1
3,688,065 - -0.9
3,688,065 - -0.6
3,688,065 - +1.1
3,688,076 + +0.5
3,688,132 + +1.3
3,688,133 - -0.3
3,688,168 + +0.5
3,688,269 - +0.5
3,688,269 - +0.1
3,688,269 - +0.9
3,688,375 - +0.7
3,688,385 + -0.2
3,688,385 + +0.4
3,688,385 + -0.1
3,688,386 - +0.8
3,688,849 + IAI46_17540 0.34 +0.2
3,689,092 + IAI46_17540 0.52 -0.5
3,689,125 + IAI46_17540 0.54 +0.4
3,689,126 - IAI46_17540 0.54 +0.5

Or see this region's nucleotide sequence