Strain Fitness in Serratia liquefaciens MT49 around IAI46_16920

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16915 and IAI46_16920 are separated by 356 nucleotidesIAI46_16920 and IAI46_16925 are separated by 113 nucleotides IAI46_16915: IAI46_16915 - starvation-sensing protein RspA, at 3,546,388 to 3,547,641 _16915 IAI46_16920: IAI46_16920 - SDR family oxidoreductase, at 3,547,998 to 3,548,765 _16920 IAI46_16925: IAI46_16925 - MFS transporter, at 3,548,879 to 3,550,243 _16925 Position (kb) 3547 3548 3549Strain fitness (log2 ratio) -2 -1 0 1 2at 3547.046 kb on + strand, within IAI46_16915at 3547.065 kb on - strand, within IAI46_16915at 3547.065 kb on - strand, within IAI46_16915at 3547.077 kb on + strand, within IAI46_16915at 3547.169 kb on + strand, within IAI46_16915at 3547.170 kb on - strand, within IAI46_16915at 3547.189 kb on + strand, within IAI46_16915at 3547.189 kb on + strand, within IAI46_16915at 3547.190 kb on - strand, within IAI46_16915at 3547.194 kb on - strand, within IAI46_16915at 3547.194 kb on - strand, within IAI46_16915at 3547.194 kb on - strand, within IAI46_16915at 3547.234 kb on + strand, within IAI46_16915at 3547.234 kb on + strand, within IAI46_16915at 3547.268 kb on + strand, within IAI46_16915at 3547.311 kb on - strand, within IAI46_16915at 3547.312 kb on + strand, within IAI46_16915at 3547.313 kb on - strand, within IAI46_16915at 3547.333 kb on - strand, within IAI46_16915at 3547.432 kb on - strand, within IAI46_16915at 3547.476 kb on + strand, within IAI46_16915at 3547.477 kb on - strand, within IAI46_16915at 3547.477 kb on - strand, within IAI46_16915at 3547.477 kb on - strand, within IAI46_16915at 3547.478 kb on + strand, within IAI46_16915at 3547.478 kb on + strand, within IAI46_16915at 3547.541 kb on + strandat 3547.541 kb on + strandat 3547.541 kb on + strandat 3547.542 kb on - strandat 3547.557 kb on + strandat 3547.570 kb on - strandat 3547.630 kb on + strandat 3547.630 kb on + strandat 3547.630 kb on + strandat 3547.630 kb on + strandat 3547.631 kb on - strandat 3547.631 kb on - strandat 3547.644 kb on + strandat 3547.695 kb on + strandat 3547.958 kb on + strandat 3547.959 kb on - strandat 3547.997 kb on + strandat 3547.997 kb on + strandat 3547.998 kb on - strandat 3547.998 kb on - strandat 3548.003 kb on + strandat 3548.295 kb on - strand, within IAI46_16920at 3548.364 kb on - strand, within IAI46_16920at 3548.364 kb on - strand, within IAI46_16920at 3548.569 kb on - strand, within IAI46_16920at 3548.569 kb on - strand, within IAI46_16920at 3548.688 kb on + strand, within IAI46_16920at 3548.712 kb on + strandat 3548.713 kb on - strandat 3548.729 kb on + strandat 3548.836 kb on - strandat 3548.905 kb on + strandat 3548.938 kb on + strandat 3548.938 kb on + strandat 3548.938 kb on + strandat 3548.939 kb on - strandat 3548.939 kb on - strandat 3548.942 kb on + strandat 3548.943 kb on - strandat 3548.944 kb on + strandat 3549.021 kb on + strand, within IAI46_16925at 3549.021 kb on + strand, within IAI46_16925at 3549.037 kb on + strand, within IAI46_16925at 3549.037 kb on + strand, within IAI46_16925at 3549.037 kb on + strand, within IAI46_16925at 3549.074 kb on + strand, within IAI46_16925at 3549.139 kb on + strand, within IAI46_16925at 3549.139 kb on + strand, within IAI46_16925at 3549.318 kb on - strand, within IAI46_16925at 3549.318 kb on - strand, within IAI46_16925at 3549.332 kb on + strand, within IAI46_16925at 3549.334 kb on + strand, within IAI46_16925at 3549.335 kb on - strand, within IAI46_16925at 3549.335 kb on - strand, within IAI46_16925at 3549.336 kb on + strand, within IAI46_16925at 3549.336 kb on + strand, within IAI46_16925at 3549.336 kb on + strand, within IAI46_16925at 3549.336 kb on + strand, within IAI46_16925at 3549.336 kb on + strand, within IAI46_16925at 3549.337 kb on - strand, within IAI46_16925at 3549.337 kb on - strand, within IAI46_16925at 3549.404 kb on + strand, within IAI46_16925at 3549.405 kb on - strand, within IAI46_16925at 3549.405 kb on - strand, within IAI46_16925at 3549.424 kb on + strand, within IAI46_16925at 3549.456 kb on - strand, within IAI46_16925at 3549.478 kb on + strand, within IAI46_16925at 3549.479 kb on - strand, within IAI46_16925at 3549.479 kb on - strand, within IAI46_16925at 3549.479 kb on - strand, within IAI46_16925at 3549.504 kb on - strand, within IAI46_16925at 3549.647 kb on + strand, within IAI46_16925at 3549.648 kb on - strand, within IAI46_16925at 3549.668 kb on - strand, within IAI46_16925at 3549.675 kb on - strand, within IAI46_16925at 3549.675 kb on - strand, within IAI46_16925at 3549.717 kb on + strand, within IAI46_16925at 3549.718 kb on - strand, within IAI46_16925at 3549.718 kb on - strand, within IAI46_16925

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,547,046 + IAI46_16915 0.52 -0.3
3,547,065 - IAI46_16915 0.54 +0.7
3,547,065 - IAI46_16915 0.54 -0.3
3,547,077 + IAI46_16915 0.55 -0.3
3,547,169 + IAI46_16915 0.62 +1.2
3,547,170 - IAI46_16915 0.62 +1.1
3,547,189 + IAI46_16915 0.64 +1.4
3,547,189 + IAI46_16915 0.64 +1.0
3,547,190 - IAI46_16915 0.64 +0.7
3,547,194 - IAI46_16915 0.64 -0.4
3,547,194 - IAI46_16915 0.64 +0.6
3,547,194 - IAI46_16915 0.64 -0.7
3,547,234 + IAI46_16915 0.67 +0.5
3,547,234 + IAI46_16915 0.67 -1.2
3,547,268 + IAI46_16915 0.70 +0.7
3,547,311 - IAI46_16915 0.74 +0.4
3,547,312 + IAI46_16915 0.74 -2.5
3,547,313 - IAI46_16915 0.74 +0.3
3,547,333 - IAI46_16915 0.75 +0.5
3,547,432 - IAI46_16915 0.83 -0.2
3,547,476 + IAI46_16915 0.87 +0.8
3,547,477 - IAI46_16915 0.87 +1.1
3,547,477 - IAI46_16915 0.87 +0.1
3,547,477 - IAI46_16915 0.87 +0.5
3,547,478 + IAI46_16915 0.87 +0.9
3,547,478 + IAI46_16915 0.87 +0.6
3,547,541 + +0.4
3,547,541 + +0.8
3,547,541 + +0.1
3,547,542 - -0.7
3,547,557 + -1.0
3,547,570 - +1.1
3,547,630 + -0.8
3,547,630 + +0.2
3,547,630 + -0.2
3,547,630 + -0.0
3,547,631 - +0.7
3,547,631 - +1.5
3,547,644 + +0.1
3,547,695 + -0.8
3,547,958 + -2.1
3,547,959 - -0.3
3,547,997 + +0.7
3,547,997 + -0.2
3,547,998 - +1.8
3,547,998 - +0.0
3,548,003 + +0.4
3,548,295 - IAI46_16920 0.39 +0.7
3,548,364 - IAI46_16920 0.48 +0.4
3,548,364 - IAI46_16920 0.48 -0.2
3,548,569 - IAI46_16920 0.74 +0.1
3,548,569 - IAI46_16920 0.74 +0.8
3,548,688 + IAI46_16920 0.90 -0.0
3,548,712 + +0.3
3,548,713 - +0.1
3,548,729 + +0.7
3,548,836 - -0.5
3,548,905 + +0.4
3,548,938 + -0.3
3,548,938 + +0.3
3,548,938 + +0.3
3,548,939 - +0.7
3,548,939 - -0.8
3,548,942 + -1.1
3,548,943 - -0.1
3,548,944 + +0.9
3,549,021 + IAI46_16925 0.10 +0.5
3,549,021 + IAI46_16925 0.10 -0.3
3,549,037 + IAI46_16925 0.12 -0.1
3,549,037 + IAI46_16925 0.12 -0.2
3,549,037 + IAI46_16925 0.12 +0.3
3,549,074 + IAI46_16925 0.14 +0.6
3,549,139 + IAI46_16925 0.19 +0.1
3,549,139 + IAI46_16925 0.19 +0.9
3,549,318 - IAI46_16925 0.32 +0.4
3,549,318 - IAI46_16925 0.32 +0.1
3,549,332 + IAI46_16925 0.33 -0.9
3,549,334 + IAI46_16925 0.33 +1.1
3,549,335 - IAI46_16925 0.33 +0.2
3,549,335 - IAI46_16925 0.33 -0.7
3,549,336 + IAI46_16925 0.33 +0.6
3,549,336 + IAI46_16925 0.33 +1.4
3,549,336 + IAI46_16925 0.33 -0.1
3,549,336 + IAI46_16925 0.33 +0.3
3,549,336 + IAI46_16925 0.33 +0.2
3,549,337 - IAI46_16925 0.34 +0.6
3,549,337 - IAI46_16925 0.34 +0.8
3,549,404 + IAI46_16925 0.38 +0.7
3,549,405 - IAI46_16925 0.39 -0.3
3,549,405 - IAI46_16925 0.39 +0.5
3,549,424 + IAI46_16925 0.40 +0.2
3,549,456 - IAI46_16925 0.42 -1.0
3,549,478 + IAI46_16925 0.44 -2.7
3,549,479 - IAI46_16925 0.44 -0.2
3,549,479 - IAI46_16925 0.44 -0.3
3,549,479 - IAI46_16925 0.44 -0.2
3,549,504 - IAI46_16925 0.46 +2.4
3,549,647 + IAI46_16925 0.56 +0.6
3,549,648 - IAI46_16925 0.56 -0.3
3,549,668 - IAI46_16925 0.58 +1.8
3,549,675 - IAI46_16925 0.58 +1.8
3,549,675 - IAI46_16925 0.58 -0.1
3,549,717 + IAI46_16925 0.61 +0.4
3,549,718 - IAI46_16925 0.61 -0.6
3,549,718 - IAI46_16925 0.61 +0.1

Or see this region's nucleotide sequence